Full text of "كتب في علم الميكروبيولوجي"

See other formats

ISBN: 0-07-246354-6

Laboratory Manual

and Workbook

in Microbiology

Applications to Patient Care

7th Edition

Josephine A. Morello
Paul A. Granato

Helen Eckel Mizer

Description: ©2003 / Spiral Bound/Comb / 304 pages
Publication Date: June 2002

Overview

This microbiology laboratory manual is designed especially for the non-majors, health science
microbiology courses. The organization reflects the body systems approach and contains specific
sections on clinical diagnosis. 36 exercises and 43 experiments cover a broad range of topics.

Features

An emphasis is placed on the basic principles of diagnostic microbiology and the lab procedures
used for isolation and identification of infectious agents. The manual stresses the importance of
the clinical specimen and provides practical insight and experience.

Experiments are adaptable for use with any microbiology text aimed at students who are
studying the allied health sciences.

There are 36 exercises, many of which contain several experiments. Each exercise begins with a
discussion of the material to be covered, the rationale of methods to be used, and a review of the
nature of microorganisms to be studies. The questions that follow each exercise are designed to
test the ability of students to relate lab information to patient-care situations.

Morello-Mizer-Granato:

Front Matter

Preface

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

PREFACE

This laboratory manual and workbook, now in its seventh
edition, maintains its original emphasis on the basic prin-
ciples of diagnostic microbiology for students preparing to
enter the allied health professions. It remains oriented pri-
marily toward meeting the interests and needs of those
who will be directly involved in patient care and who wish
to learn how microbiological principles should be applied
in the practice of their professions. These include nursing
students, dental hygienists, dietitians, hospital sanitarians,
inhalation therapists, operating room or cardiopulmonary
technicians, optometric technicians, physical therapists,
and physicians' assistants. For such students, the clinical and
epidemiological applications of microbiology often seem
more relevant than its technical details. Thus, the challenge
for authors of textbooks and laboratory manuals, and for
instructors, is to project microbiology into the clinical set-
ting and relate its principles to patient care.

The authors of this manual have emphasized the pur-
poses and functions of the clinical microbiology laboratory
in the diagnosis of infectious diseases. The exercises illus-
trate as simply as possible the nature of laboratory proce-
dures used for isolation and identification of infectious
agents, as well as the principles of asepsis, disinfection, and
sterilization. The role of the health professional is projected
through stress on the importance of the clinical specimen
submitted to the laboratory — its proper selection, timing,
collection, and handling. Equal attention is given to the
applications of aseptic and disinfectant techniques as they
relate to practical situations in the care of patients. The
manual seeks to provide practical insight and experience
rather than to detail the microbial physiology a professional
microbiologist must learn. We have approached this revi-
sion with a view toward updating basic procedures and ref-
erence sources. Every exercise has been carefully reviewed
and revised, if necessary, to conform to changing practices
in clinical laboratories. A new exercise, Exercise 19, has
been prepared describing modern diagnostic techniques
that use antigen detection and nucleic acid methods. These
methods are now in use in many clinical microbiology lab-
oratories. When relevant, antigen detection methods have
been added to the exercises, so that the students will gain
experience in their use. Expanded sections on diagnosing

microbial pathogens that require special laboratory tech-
niques are included in the exercises of Section XI. Many
new figures and additional colorplates are found in this
edition. These are intended to illustrate procedures the stu-
dents will use and help the beginning student recognize
the microbes they will view under the microscope as well
as the appropriate reactions for biochemical tests they will
perform.

The material is organized into four parts of increasing
complexity designed to give students first a sense of famil-
iarity with the nature of microorganisms, then practice in
aseptic cultural methods in clinical settings. Instructors
may select among the exercises or parts of exercises they
wish to perform, according to the focus of their courses
and time available. Part 1 introduces basic techniques of
microbiology. It includes general laboratory directions,
precautions for handling microorganisms, the use of the
microscope, microscopic morphology of microorganisms
in wet and stained preparations, pure culture techniques,
and an exercise in environmental microbiology.

Part 2 provides instruction and some experience in
methods for the destruction of microorganisms, so that
students may understand the principles of disinfection and
sterilization before proceeding to the study of pathogenic
microorganisms. There is an exercise on antimicrobial
agents that includes antimicrobial susceptibility testing us-
ing the National Committee for Clinical Laboratory
Standards (NCCLS) technique, with the latest category
designations and inhibition zone interpretations, as well as
experiments to determine minimal inhibitory concentra-
tions by the broth dilution method, and bacterial resistance
to antimicrobial agents.

The principles learned are then applied to diagnostic
microbiology in Part 3. Techniques for collecting clinical
specimens (Microbiology at the Bedside) and precautions
for handling them are reviewed. A discussion of the
Centers for Disease Control and Prevention "standard pre-
cautions" for avoiding transmission of bloodborne
pathogens is included. The normal flora of various parts of
the body is discussed. The five sections of this part cover
the principles of diagnostic bacteriology; the microbiology
of the respiratory, intestinal, urinary, and genital tracts; and

Morello-Mizer-Granato:

Front Matter

Preface

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

the special techniques required for the recognition
of anaerobes, mycobacteria, mycoplasmas, rickettsiae,
chlamydiae, viruses, fungi, protozoa, and animal parasites.
Sections VIII and IX, dealing respectively with the micro-
biology of the respiratory and intestinal tracts, present ex-
ercises on the common pathogens and normal flora of
these areas, followed by exercises dealing with methods for
culturing appropriate clinical specimens. Experiments for
performing antimicrobial susceptibility tests on relevant
isolates from such specimens are also included.

The former Part 4 has been incorporated into Part 3,
reflecting the essential role of antigen detection techniques
in the routine laboratory and the more limited use of
methods for detecting serum antibodies. Part 4 presents
some simple microbiological methods for examining wa-
ter and milk.

The sequence of the exercises throughout the manual,
but particularly in Part 3, is intended to reflect the ap-
proach of the diagnostic laboratory to clinical specimens.
In each exercise, the student is led to relate the practical
world of patient care and clinical diagnosis to the opera-
tion of the microbiology laboratory. To learn the normal
flora of the body and to appreciate the problem of recog-
nizing clinically significant organisms in a specimen con-
taining mixed flora, students collect and culture their own
specimens. Simulated clinical specimens are also used to
teach the microbiology of infection. The concept of trans-
missible infectious disease becomes a reality, rather than a
theory, for the student who can see the myriad of mi-
croorganisms present on hands, clothes, hair, or environ-
mental objects, and in throat, feces, and urine. Similarly, in
learning how antimicrobial susceptibility testing is done,
the student acquires insight into the basis for specific drug
therapy of infection and the importance of accurate labo-
ratory information.

In acquiring aseptic laboratory technique and a
knowledge of the principles of disinfection and steriliza-
tion, the student is better prepared for subsequent en-
counters with pathogenic, transmissible microorganisms in
professional practice. The authors believe that one of the
most valuable contributions a microbiology laboratory
course can make to patient care is to give the student re-
peated opportunities to understand and develop aseptic
techniques through the handling of cultures. Mere
demonstrations have little value in this respect. Although
the use of pathogenic microorganisms is largely avoided in
these exercises, the students are taught to handle all speci-
mens and cultures with respect, since any microorganism
may have potential pathogenicity. To illustrate the nature of

infectious microorganisms, material to be handled by stu-
dents includes related "nonpathogenic" species of similar
morphological and cultural appearance, and demonstra-
tion material presents pathogenic species. Occasional ex-
ceptions are made in the case of organisms such as pneu-
mococci, staphylococci, or Clostridia that are often
encountered, in any case, in the flora of specimens from
healthy persons. If the instructor so desires, however, sub-
stitutions can be made for these as well.

Teaching flexibility has been sought throughout the
manual. There are 35 exercises, many of which contain
general experiments. These may be tailored to meet the
needs of any prescribed course period, the weekly labora-
tory hours available, or the interests and capabilities of in-
dividual students. The manual can be adapted to follow any
textbook on basic microbiology appropriate for students
entering the allied health field. For the instructor's use, a
more complete listing of current literature and other
source material is provided in the Instructor's Manual.

Each exercise begins with a discussion of the material
to be covered, the rationale of methods to be used, and a
review of the nature of microorganisms to be studied. In
Part 3, tables are frequently inserted to summarize labora-
tory and/or clinical information concerning the major
groups of pathogenic microorganisms. The questions that
follow each exercise are designed to test the ability of stu-
dents to relate laboratory information to patient-care situ-
ations and to stimulate them to read more widely on each
subject presented.

The five appendices included in previous editions of
this manual have been moved to the Instructor's Manual to
provide instructors with information and assistance in pre-
senting the laboratory course.

Sadly, our long-term colleague and original inspira-
tion for this laboratory manual, Dr. Marion Wilson, passed
away during the initial stages of this revision. We dedicate
this edition to her. We are fortunate in being joined by Dr.
Paul Granato, who is responsible for much of the new ma-
terial in Exercise 19 and Sections X and XI.

We are grateful to all those professional colleagues
who gave generously of their time and expertise to make
constructive suggestions regarding the revision of this
manual. For their helpful comments and reviews, we thank
Caroline Amiet, Odessa College; John Mark Clauson,
Western Kentucky University; Angel Gochee, Indiana
University; John Ferrara, Cuyahoga Community College;
Fernando Monroy Indiana State University; David
Stetson, University of Maine; Martin Steinbeck, Mid-
Plains Community College; and Jane Weston, Genesse

XII

Preface

Morello-Mizer-Granato:

Front Matter

Preface

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

Community College. We owe special thanks to Dr.
Edward Bottone, Mount Sinai Hospital, New York, for
providing us with several of the photographs in the color-
plates, Dr. Nancy Morello, Massachusetts Bay Community
College for her advice on revisions, and to Mr. Scott
Matushek, Mr. Gordon Bowie, and Ms. Liane Duffee-
Kerr of the University of Chicago for their photographic
assistance.

Finally, we acknowledge the role of McGraw-Hill in
publication of this work. Their many courtesies, extended
through Jean Fornango, senior developmental editor,
have encouraged and guided this new edition, and they

have been primarily responsible for its production. For her
skillful efforts and expert assistance during the production
process, we thank Sheila Frank, project manager. We also
acknowledge Laura Fuller, senior production supervisor,
Rick D. Noel, design coordinator, Carrie K. Burger, lead
photo research coordinator, and Tammy Juran, senior me-
dia project manager, who contributed to the style and
appearance of this edition.

J. A.M.

H. E. M.

P. A. G.

Preface

XIII

Morello-Mizer-Granato:

I. Basic Techniques of

©TheMcGraw-H

1. Orientation to the

Laboratory Manual and Microbiology Microbiology Laboratory Companies, 2003

Workbook in Microbiology,
7/e

Section

Orientation to the
Microbiology Laboratory

Warning

Some of the laboratory experiments included in this text may be hazardous if you han-
dle materials improperly or carry out procedures incorrectly. Safety precautions are
necessary when you work with any microorganism, and with chemicals, glass test
tubes, hot water baths, sharp instruments, and similar materials. Your school may
have specific regulations about safety procedures that your instructor will explain to
you. If you have any problems with materials or procedures, please ask your instruc-
tor for help.

Safety Procedures and Precautions

The microbiology laboratory, whether in a classroom or a working diagnostic labora-
tory, is a place where cultures of microorganisms are handled and examined. This
type of activity must be carried out with good aseptic technique in a thoroughly clean,
well-organized workplace. In aseptic technique, all materials that are used have been
sterilized to kill any microorganisms contained in or on them, and extreme care is
taken not to introduce new organisms from the environment. Even if the microorgan-
isms you are studying are not usually considered pathogenic (disease producing), any
culture of any organism should be handled as if it were a potential pathogen. With
current medical practices and procedures, many patients with lowered immune de-
fenses survive longer than they did before. As a result, almost any microorganism can
cause disease in them under the appropriate circumstances.

Each student must quickly learn and continuously practice aseptic labora-
tory technique. It is important to prevent contamination of your hands, hair, and cloth-
ing with culture material and also to protect your neighbors from such contamination.
In addition, you must not contaminate your work with microorganisms from the envi-
ronment. The importance of asepsis and proper disinfection is stressed throughout
this manual and demonstrated by the experiments. Once these techniques are
learned in the laboratory, they apply to almost every phase of patient care, especially
to the collection and handling of specimens that are critical if the laboratory is to make
a diagnosis of infectious disease. These specimens should be handled as carefully as
cultures so that they do not become sources of infection to others. An important
problem in hospitals is the transmission of microorganisms between patients, espe-
cially by contaminated hands. Well-trained professionals, caring for the sick, should
never be responsible for transmitting infection between patients. Appropriate atten-
tion to frequency and method of hand washing (scrubbing for at least 30 seconds) is

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

critical for preventing these hospital-acquired infections (also known as nosocomial
infections).

In general, all safety procedures and precautions followed in the microbiol-
ogy laboratory are designed to:

1 . Restrict microorganisms present in specimens or cultures to the containers
in which they are collected, grown, or studied.

2. Prevent environmental microorganisms (normally present on hands, hair,
clothing, laboratory benches, or in the air) from entering specimens or cultures
and interfering with results of studies.

Hands and bench tops are kept clean with disinfectants, laboratory coats
are worn, long hair is tied back, and working areas are kept clear of all unnecessary
items. Containers used for specimen collection or culture material are presterilized
and capped to prevent entry by unsterile air, and sterile tools are used for transferring
specimens or cultures. Nothing is placed in the mouth.

Personal conduct in a microbiology laboratory should always be quiet and
orderly. The instructor should be consulted promptly whenever problems arise.
Any student with a fresh, unhealed cut, scratch, burn, or other injury on either hand
should notify the instructor before beginning or continuing with the laboratory work. If
you have a personal health problem and are in doubt about participating in the
laboratory session, check with your instructor before beginning the work. Careful at-
tention to the principles of safety is required throughout any laboratory course in
microbiology

General Laboratory Directions

1 . Always read the assigned laboratory material before the start of the laboratory
period.

2. Before entering the laboratory, remove coats, jackets, and other outerwear.
These should be left outside the laboratory, together with any backpacks,
books, papers, or other items not needed for the work.

3. To be admitted to the laboratory, each student should wear a fresh, clean,
knee-length laboratory coat.

4. At the start and end of each laboratory session, students should clean their
assigned bench-top area with a disinfectant solution provided. That space
should then be kept neat, clean, and uncluttered throughout each laboratory
period.

5. Learn good personal habits from the beginning:

Tie back long hair neatly, away from the shoulders.

Do not wear jewelry to laboratory sessions.

Keep fingers, pencils, and such objects out of your mouth.

Do not smoke, eat, or drink in the laboratory.

Do not lick labels with your tongue. Use tap water or preferably, self-sticking labels.

Do not wander about the laboratory. Unnecessary activity can cause accidents,
distract others, and promote contamination.

Basic Techniques of Microbiology

Morello-Mizer-Granato:

I. Basic Techniques of

1. Orientation to the

Laboratory Manual and Microbiology Microbiology Laboratory Companies, 2003

Workbook in Microbiology,
7/e

6. Each student will need matches, bibulous paper, lens paper, a china-marking
pencil, and a 100-mm ruler (purchased or provided). A black, waterproof
marking pen may be used to mark petri plates and tubes.

7. Keep a complete record of all your experiments, and answer all questions at
the end of each exercise. Your completed work can be removed from the
manual and submitted to the instructor for evaluation.

8. Discard all cultures and used glassware into the container labeled
CONTAMINATED. (This container will later be sterilized.) Plastic or other
disposable items should be discarded separately from glassware in containers
to be sterilized.

Never place contaminated pipettes on the bench top.

Never discard contaminated cultures, glassware, pipettes, tubes, or slides in
the wastepaper basket or garbage can.

Never discard contaminated liquids or liquid cultures in the sink.

9. If you are in doubt as to the correct procedure, double-check the manual. If
doubt continues, consult your instructor. Avoid asking your neighbor for
procedural help.

1 0. If you should spill or drop a culture or if any type of accident occurs, call the
instructor immediately. Place a paper towel over any spill and pour disinfectant
over the towel. Let the disinfectant stand for 15 minutes, then clean the spill
with fresh paper towels. Remember to discard the paper towels in the proper
receptacle and wash your hands carefully.

1 1 . Report any injury to your hands to the instructor either before the laboratory
session begins or during the session.

1 2. Never remove specimens, cultures, or equipment from the laboratory under
any circumstances.

13. Before leaving the laboratory, carefully wash and disinfect your hands. Arrange
to launder your lab coat so that it will be fresh for the next session.

to the Microbiology Laboratory

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Name

Class

Date

Exercise

The Microscope

A good microscope is an essential tool for any microbiology laboratory There are many kinds of
microscopes, but the type most useful in diagnostic work is the compound microscope. By means of a
series of lenses and a source of bright light, it magnifies and illuminates minute objects such as bac-
teria and other microorganisms that would otherwise be invisible to the eye. This type of micro-
scope will be used throughout your laboratory course. As you gain experience using it, you will
realize how precise it is and how valuable for studying microorganisms present in clinical specimens
and in cultures. Even though you may not use a microscope in your profession, a firsthand knowl-
edge of how to use it is important. Your laboratory experience with the microscope will give you
a lasting impression of living forms that are too small to be seen unless they are highly magnified.
As you learn about these "invisible" microorganisms, you should be better able to understand their
role in transmission of infection.

Purpose

To study the compound microscope and learn

A. Its important parts and their functions

B. How to focus and use it to study microorganisms

C. Its proper care and handling

Materials

An assigned microscope

Lens paper

Immersion oil

A methylene-blue-stained smear of Candida albicans, a yeast of medical importance (the fixed,
stained smear will be provided by the instructor)

Instructions

A. Important Parts of the Compound Microscope and Their Functions

1. Look at the microscope assigned to you and compare it with the photograph in figure 1.1. Notice that its working parts
are set into a sturdy frame consisting of a base for support and an arm for carrying it. (Note: When lifting and carrying the
microscope, always use both hands; one to grasp the arm firmly, the other to support the base (fig. 1.2). Never lift it by the
part that holds the lenses.)

2. Observe that a flat platform, or stage as it is called, extends between the upper lens system and the lower set of devices for
providing light. The stage has a hole in the center that permits light from below to pass upward into the lenses above. The
object to be viewed is positioned on the stage over this opening so that it is brightly illuminated from below (do not
attempt to place your slide on the stage yet). Note the adjustment knobs at the side of the stage, which are used to move
the slide in vertical and horizontal directions on the stage. This type of stage is referred to as a mechanical stage.

3. A built-in illuminator at the base is the source of light. Light is directed upward through the Abbe condenser. The condenser
contains lenses that collect and concentrate the light, directing it upward through any object on the stage. It also has a
shutter, or iris diaphragm, which can be used to adjust the amount of light admitted. A lever (sometimes a rotating knob) is
provided on the condenser for operating the diaphragm.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Figure 1.1 The Compound microscope and its parts. Courtesy of OlympusAmerica, Inc

Rotating -
nosepiece

Mechanical stage

Abbe condenser
with iris
diaphragm

Ocular lenses
(bifocal)

Arm

Objective lens

Course focus knob

Fine focus knob

Stage adjustment
knobs

Base

The Microscope

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Figure 1.2 Proper handling of a microscope. Both hands are used when carrying this delicate instrument

The condenser can be lowered or raised by an adjustment knob. Lowering the condenser decreases the amount of light
that reaches the object. This is usually a disadvantage in microbiological work. It is best to keep the condenser fully raised
and to adjust light intensity with the iris diaphragm.

4. Above the stage, attached to the arm, a tube holds the magnifying lenses through which the object is viewed. The lower
end of the tube is fitted with a rotating nosepiece holding three or four objective lenses. As the nosepiece is rotated, any one of
the objectives can be brought into position above the stage opening. The upper end of the tube holds the ocular lens, or
eyepiece (a monocular scope has one; a binocular scope permits viewing with both eyes through two oculars).

5. Depending on the brand of microscope used, either the rotating nosepiece or the stage can be raised or lowered by coarse
and fine adjustment knobs. These are located either above or below the stage. On some microscopes they are mounted as
two separate knobs; on others they may be placed in tandem (see fig. 1.1) with the smaller fine adjustment extending from
the larger coarse wheel. Locate the coarse adjustment on your microscope and rotate it gently, noting the upward or
downward movement of the nosepiece or stage. The coarse adjustment is used to bring the objective down into position
over any object on the stage, while looking at it from the side to avoid striking the object and thus damaging the expensive
objective lens (fig. 1.3). The fine adjustment knob moves the tube to such a slight degree that movement cannot be
observed from the side. It is used when one is viewing the object through the lenses to make the small adjustments
necessary for a sharp, clear image.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Figure 1.3 When adjusting the microscope, the technologist observes the objective carefully to prevent breaking the slide

and damaging the objective lens of the microscope.

Turn the adjustment knobs slowly and gently, as you pay attention to the relative positions of the objective and object.
Avoid bringing the objective down with the fine adjustment while viewing, because even this slight motion may force the
lens against the object. Bring the lens safely down first with the coarse knob; then, while looking through the ocular, turn
the fine knob to raise the lens until you have a clear view of the subject.

Rotating the fine adjustment too far in either direction may cause it to jam. If this should happen, never attempt to force it;
call the instructor. To avoid jamming, gently locate the two extremes to which the fine knob can be turned, then bring it
back to the middle of its span and keep it within one turn of this central position. With practice, you will learn how to use
the coarse and fine adjustment knobs in tandem to avoid damaging your slide preparations.
6. The total magnification achieved with the microscope depends on the combination of the ocular and objective lens used. Look
at the ocular lens on your microscope. You will see that it is marked "10X " meaning that it magnifies 10 times.

Now look at the three objective lenses on the nosepiece. The short one is the low-power objective. Its metal shaft bears a
"10X" mark, indicating that it gives tenfold magnification. When an object is viewed with the 10 X objective combined
with the 10X ocular, it is magnified 10 times 10, or X100. Among your three objectives, this short one has the largest lens
but the least magnifying power.

The other two objectives look alike in length, but one is an intermediate objective, called the high-power (or high-dry)

objective. It may or may not have a colored ring on it. What magnification number is stamped on it? What is

the total magnification to be obtained when it is used with the ocular?

The third objective, which almost always has a colored ring, is called an oil-immersion objective. It has the smallest lens

but gives the highest magnification of the three. (What is its magnifying number? What total magnification

will it provide together with the ocular? ) This objective is the most useful of the three for the microbiologist

because its high magnification permits clear viewing of all but the smallest microorganisms (viruses require an electron
microscope). As its name implies, this lens must be immersed in a drop of oil placed on the object to be viewed. The oil
improves the resolution of the magnified image, providing sharp detail even though it is greatly enlarged. The function of

The Microscope

Morello-Mizer-Granato:

I. Basic Techniques of

1. Orientation to the

Laboratory Manual and Microbiology Microbiology Laboratory Companies, 2003

Workbook in Microbiology,
7/e

the oil is to prevent any scattering of light rays passing through the object and to direct them straight upward through
the lens.

Notice that the higher the magnification used, the more intense the light must be, but the amount of illumination
needed is also determined by the density of the object. For example, more light is needed to view stained than unstained
preparations.

7. The focal length of an objective is directly proportional to the diameter of its lens. You can see this by comparing your three
objectives when positioned as close to the stage as the coarse adjustment permits. First place the low-power objective in
vertical position and bring it down with the coarse knob as far as it will go (gently !). The distance between the end of the
objective, with its large lens, and the top of the stage is the focal length. Without moving the coarse adjustment, swing the
high-power objective carefully into the vertical position, and note the much shorter focal length. Now, with extreme
caution, bring the oil-immersion objective into place, making sure your microscope will permit this. If you think the lens
will strike the stage or touch the condenser lens, don't try it until you have raised the nosepiece or lowered the stage
(depending on your type of microscope) with the coarse adjustment. The focal length of the oil-immersion objective is
between 1 and 2 mm, depending on the diameter of the lens it possesses (some are finer than others).

Never swing the oil-immersion objective into use position without checking to see that it will not make contact with the stage, the
condenser, or the object being viewed. The oil lens alone is one of the most expensive and delicate parts of the microscope and
must always be protected from scratching or other damage.

8. Take a piece of clean, soft lens paper and brush it lightly over the ocular and objective lenses and the top of the condenser.
With subdued light coming through, look into the microscope. If you see specks of dust, rotate the ocular in its socket to
see whether the dirt moves. If it does, it is on the ocular and should be wiped off more carefully. If you cannot solve the
problem, call the instructor. Never wipe the lenses with anything but clean, dry lens paper. Natural oil from eyelashes, mascara, or
other eye makeup can soil the oculars badly and seriously interfere with microscopy. Eyeglasses may scratch or be scratched
by the oculars. If they are available, protective eyecups placed on the oculars prevent these problems. If not, you must learn
how to avoid soiling or damaging the ocular lens.

9. If oculars or objectives must be removed from the microscope for any reason, only the instructor or other delegated person should remove
them. Inexperienced hands can do irreparable damage to a precision instrument.

10. Because students in other laboratory sections may also use your assigned microscope, you should examine the microscope
carefully at the beginning of each laboratory session. Report any new defects or damage to the instructor immediately.

B. Microscopic Examination of a Slide Preparation

1. Now that you are familiar with the parts and mechanisms of the microscope, you are ready to learn how to focus and use
it to study microorganisms. The stained smear provided for you is a preparation of a yeast {Candida albicans) that is large
enough to be seen easily even with the low-power objective. With the higher objectives, you will see that it has some
interesting structures of different sizes and shapes that can be readily located as you study the effect of increasing
magnification. You are not expected to learn the morphology of the organism at this point.

2. Place the stained slide securely on the stage, making certain it cannot slip or move. Position it so that light coming up
through the condenser passes through the center of the stained area.

3. Bring the low-power objective into vertical position and lower it as far as it will go with the coarse adjustment, observing
from the side.

4. Look through the ocular. If you have a monocular scope, keep both eyes open (you will soon learn to ignore anything
seen by the eye not looking into the scope). If you have a binocular scope, adjust the two oculars horizontally to the width
between your eyes until you have a single, circular field of vision. Now bring the objective slowly upward with the coarse
adjustment until you can see small, blue objects in the field. Make certain the condenser is fully raised, and adjust the light
to comfortable brightness with the iris diaphragm.

5. Use the fine adjustment knob to get the image as sharp as possible. Now move the slide slowly around, up and down, back
and forth. The low-power lens should give you an overview of the preparation and enable you to select an interesting area
for closer observation at the next higher magnification.

6. When you have selected an area you wish to study further, swing the high-dry objective into place. If you are close to
sharp focus, make your adjustments with the fine knob. If the slide is badly out of focus with the new objective in place,

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

look at the body tube and bring the lens down close to, but not touching, the slide. Then, looking through the ocular,
adjust the lens slowly, first with the coarse adjustment, then with the fine, until you have a sharp focus. Notice the
difference in magnification of the structures you see with this objective as compared with the previous one.

7. Without moving the slide and changing the field you have now seen at two magnifications, wait for the instructor to
demonstrate the use of the oil-immersion objective.

8. Move the high-dry lens a little to one side and place a drop of oil on the slide, directly over the stage opening. With your
eyes on the oil-immersion objective, bring it carefully into position making certain it does not touch the stage or slide.
While still looking at the objective, gently lower the nosepiece (or raise the stage) until the tip of the lens is immersed in
the oil but is not in contact with the slide. Look through the ocular and very slowly focus upward with the fine
adjustment. Most microscopes are now parfocal; that is, the object remains in focus as you switch from one objective to
another. In this case, the fine adjustment alone will bring the object into sharp focus. If you have trouble in finding the
field or getting a clear image, ask the instructor for help. When you have a sharp focus, observe the difference in
magnification obtainable with this objective as compared with the other two. It is about 2^ times greater than that
provided by the high-power objective, and about 10 times more than that of the low-power lens.

9. Record your observations by drawing in each of the following circles several of the microbial structures you have seen,
indicating their comparative size when viewed with each objective.

10. When you have finished your observations, remove the slide from the stage (taking care not to get oil on the high-dry
lens) and gently clean the oil from the oil-immersion objective with a piece of dry lens paper.

Under each drawing, indicate the total magnification (TM) obtained by each objective combined with the ocular.

Low-Power Objective

High -Power Objective

Oil-Immersion Objective

TM:

C. Care and Handling of the Microscope

1. Always use both hands to carry the microscope, one holding the arm, one under the base (see fig. 1.2).

2. Before each use, examine the microscope carefully and report any unusual condition or damage.

3. Keep the oculars, objectives, and condenser lens clean. Use dry lens paper only.

4. At the end of each laboratory period in which the microscope is used, remove the slide from the stage, wipe away the oil
on the oil-immersion objective, and place the low-power objective in vertical position.

5. Replace the dust cover, if available, and return the microscope to its box.

Table 1 suggests possible corrections to common problems encountered when using a micro-
scope.

The Microscope

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Table 1 .1 Troubleshooting the Microscope

Problem

Possible Corrections

Insufficient light passing through ocular

Particles of dust or lint interfering with view of visual field
Moving particles in hazy visual field

Raise condenser

Open iris diaphragm

Check objective: is it locked in place?

Wipe ocular and objective {gently) with clean lens paper

Caused by bubbles in oil immersion; check objective

Make certain that the oil-immersion lens is in use, not the high-dry objective with
oil on the slide

Make certain the oil-immersion lens is in full contact with the oil

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Questions

1. List the optical parts of the microscope. How does it achieve magnification? Resolution?

2. What is the function of the condenser?

3. What is the function of the iris diaphragm? To what part of the human eye would you compare it?

4. Why do you use oil on a slide to be examined with the oil-immersion objective?

5. What is the advantage of parfocal lenses?

The Microscope

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

6. If 5X instead of 10 X oculars were used with the same objectives now on your microscope, what magnifications would be
achieved?

7. From reading in your textbook, can you name two other types of microscopes? Is their magnification range higher or
lower than that of the compound light microscope?

Basic Techniques of Microbiology

Morello-Mizer-Granato:

I. Basic Techniques of

1. Orientation to the

Laboratory Manual and Microbiology Microbiology Laboratory Companies, 2003

Workbook in Microbiology,
7/e

Name

Class Date

Exercise J Handling and Examining Cultures

Microscopic examination of microorganisms provides important information about their mor-
phology but does not tell us much about their biological characteristics. To obtain such informa-
tion, we need to observe microorganisms in culture. If we are to cultivate them successfully in the
laboratory, we must provide them with suitable nutrients, such as protein components, carbohy-
drates, minerals, vitamins, and moisture in the right composition. This mixture is called a culture
medium (plural, media). It may be prepared in liquid form, as a broth, or solidified with agar, a non-
nutritive solidifying agent extracted from seaweed. Agar media may be used in tubes as a solid col-
umn (called a deep) or as slants, which have a greater surface area (see figs. 2.3 and 2.4). They are
also commonly used in petri dishes (named for the German bacteriologist who designed them), or
plates, as they are often called.

Solid media are essential for isolating and separating bacteria growing together in a spec-
imen collected from a patient, for example, urine or sputum. When a mixture of bacteria is streaked
(spread) across the surface of an agar plate, it is diluted out so that single bacterial cells are deposited
at certain areas on the plate. These single cells multiply at those sites until a visible aggregate called
a colony is formed (see fig. 2.6). Each colony represents the growth of one bacterial species. A sin-
gle, separated colony can be transferred to another medium, where it will grow as a pure culture.
Colonies of several different species are regularly present on the same agar plate when certain pa-
tient specimens are inoculated onto them. Work with pure cultures permits the microbiologist to
study the properties of individual species without interference from other species. This practice of
streaking plates to obtain pure cultures is critical in the hospital laboratory because it allows the mi-
crobiologist to determine how many types of bacteria are present, to identify those likely to be
causing the patient's disease, and to test which antimicrobial agents will be effective for treatment.
You will be learning the streaking technique to obtain pure cultures in Exercise 9.

The appearance of colonial growth on agar media can be very distinctive for individual
species. Observation of the noticeable, gross features of colonies, that is, of their colonial morphol-
ogy, is therefore very important. The color, density, consistency, surface texture, shape, and size of
colonies all should be observed, for these features can provide clues as to the identity of an organ-
ism, although final identification cannot be made by morphology alone (fig. 2.1a).

In liquid media, some bacteria grow diffusely, producing uniform clouding, whereas
others look very granular. Layering of growth at the top, center, or bottom of a broth tube reveals
something of the organisms' oxygen requirements. Sometimes colonial aggregates are formed and
the bacterial growth appears as small puff balls floating in the broth. Observation of such features
can also be helpful in recognizing types of organisms (fig. 2.1b).

You must learn how to handle cultures aseptically. The organisms must not be permit-
ted to contaminate the worker or the environment, and the cultures must not be contaminated
with extraneous organisms. In this exercise, you will use cultures containing environmental or-
ganisms or organisms of low pathogenic potential. Nonetheless, you should handle them carefully
to avoid contaminating yourself and your neighbors. Also, if you contaminate the cultures, your
results will be spoiled. Before you begin, reread the opening paragraphs of Section I dealing with
safety procedures and general laboratory directions (pp. 3—5).

Handling and Examining Cultures

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Figure 2.1 Examples of bacterial growth patterns, (a) Some colonial characteristics on agar media. Characteristics of the

colony edges may be distinctive for many bacterial species. The shapes and elevations shown in the two rows
of sketches are not intended to be matched, (b) Some growth patterns in broth media.

Shape
(top view)

c o " o
o c

Circular

Irregular

Filamentous

Punctiform
(pinpoint)

Elevation
(side view)

Flat

Raised

Convex

Umbilicate
(collapsed

in center)

Umbonate
(heaped)

(a) Some colonial characteristics on agar media 1 *

■ _

_ *

(b) Some growth patterns in broth media

*Note: Shapes and elevations shown in this diagram are not intended to be matched

Growth

turbid

layered

sedimented

layered

forms

and

at surface

at bottom only

below

puff balls,

diffuse

only

surface;

layered

throughout

none beneath
center

below
surface

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Purpose

To make aseptic transfers of pure cultures and to examine them for important gross features

Materials

4 tubes of nutrient broth

4 slants of nutrient agar

One 24-hour slant culture of Escherichia coli

One 24-hour slant culture of Bacillus subtilis

One 24-hour slant culture of Serratia marcescens (pigmented)

One 24-hour plate culture of Serratia marcescens (pigmented)

Wire inoculating loop

Bunsen burner (and matches) or electric bacterial incinerator

China-marking pencil or waterproof pen (or labels)

A short ruler with millimeter markings

Procedures

A. Transfer of a Slant Culture to a Nutrient Broth

1 . The procedure will be demonstrated. Watch carefully and then do it yourself, following directions given.

2. Take up the inoculating loop by the handle and hold it as you would a pencil, loop down. Hold the wire in the flame of
the Bunsen burner or in the bacterial incinerator until it glows red (fig. 2.2). Remove loop and hold it steady a few
moments until cool. Do not wave it around, put it down, or touch it to anything.

Figure 2.2 Sterilizing the wire inoculating loop in the flame of a Bunsen burner (left) or a bacterial incinerator (right).

Handling and Examining Cultures

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Figure 2.3 Inoculating a culture tube. Notice that the tube is held almost horizontally. Its cap is tucked in the little finger of

the right hand, which holds the inoculating loop.

3. Pick up the slant culture of Escherichia coli with your left hand. Still holding the loop like a pencil, but more horizontally,
in your right hand, use the little ringer of the loop hand to remove the closure (cotton plug, slip-on, or screw cap) of the
culture tube. Keep your little finger curled around this closure when it is free — do not place it on the table (fig. 2.3).

4. Insert the loop into the open tube (holding both horizontally). Touch the loop (not the handle!) to the growth on the slant
and remove a loopful of culture. Don't dig the loop into the agar; merely scrape a small surface area gently

5. Withdraw the loop slowly and steadily, being careful not to touch it to the mouth of the tube. Keep it steady, and do not
touch it to anything (it's loaded!) while you replace the tube closure and put the tube back in the rack.

6. Still holding the loop steady in one hand, use the other hand to pick up a tube of sterile nutrient broth from the rack.
Now remove the tube closure, as you did before, with the little finger of the loop hand (don't wave or jar the loop). Insert
the loop into the tube and down into the broth. Gently rub the loop against the wall of the tube (don't agitate or splash
the broth), making sure the liquid covers the area but does not touch the loop handle.

7. As you withdraw the loop, touch it to the inside wall of the tube (not the tube's mouth) to remove excess fluid from it.
Pull it out without touching it again, replace the closure, and put the tube back in the rack.

8. Now carefully sterilize the loop. If you are using a Bunsen burner, hold it first in the coolest part of the flame (yellow),
then in the hot blue cone until it glows. Be sure all of the wire is sterilized, but do not burn the handle. When the wire
has cooled, the loop can be placed on the bench top.

9. Label the tube you have just inoculated with your name, the name of the organism, and the date.

10. Repeat steps 2 through 9 with each of the other two slant cultures (Bacillus subtilis and Serratia marcescens).

B. Transfer of a Slant Culture to a Nutrient Agar Slant

1 . Start again with sterilizing the loop.

2. Pick up the slant culture of E. coli, open it, and take up some growth on the sterile loop.

3. Recap the culture tube carefully and replace it in the rack. Pick up and open a sterile nutrient agar slant (keep the charged
loop steady meantime).

4. Introduce the charged loop into the fresh tube of agar, and without touching any surface, pass it down the tube to the deep
end of the slant. Streak the agar slant by lightly touching the loop to the surface of the agar, swishing it back and forth two
or three times (don't dig up the agar), then zigzaging it upward to the top of the slant. Lift the loop from the agar surface
and withdraw it from the tube without touching the tube surfaces (fig. 2.4).

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Figure 2.4 Streaking an agar slant with the loop.

5. Close and replace the inoculated tube in the rack; then sterilize the loop as before.

6. Label the freshly inoculated tube with your name, the name of the organism, and the date.

7. Repeat steps 1 through 6 of procedure B with each of the other two slant cultures provided (B. subtilis and S. marcescens).

C. Transfer of a Single Bacterial Colony on a Plate Culture to a Nutrient Broth and a Nutrient
Agar Slant

1 . Start again with sterilizing the loop.

2. Hold the sterile, cooling loop in one hand and with the other hand turn the assigned plate culture of Serratia marcescens so
that it is positioned with the bottom (smaller) part of the dish up. Lift this part of the dish with your free hand (fig. 2.5)
and turn it so that you can clearly see isolated colonies of S. marcescens growing on the surface of the plated agar.

3. With the sterile, cool loop, touch the surface of one isolated bacterial colony (fig. 2.6). Withdraw the loop and replace the
bottom part of the dish into the inverted top lying open on the table.

4. Now inoculate a sterile nutrient broth with the charged loop, as in procedure A, steps 6 through 9.

5. Sterilize the loop again, open the plate, pick another colony, close the plate, and inoculate a sterile agar slant as in
procedure B, steps 4 through 6.

D. Incubation of Freshly Inoculated Cultures

1 . Make certain all the broths (4) and slants (4) you have inoculated are properly and fully labeled.

2. Place your transferred cultures in an assigned rack in the incubator. The incubator temperature should be 35 to 37°C.

Record your reading of the incubator thermometer here.

E. Examination of Culture Growth

1. When you have finished making the culture transfers as directed, take a few minutes to look closely at the grown cultures
with which you have been working. In the Results section of this exercise, there are blank forms in which you can record
information as to the appearance of these cultures, specifically: size of colonies (in mm), color, density (translucent? opaque?),
consistency (creamy? dry? flaky?), surface texture (smooth? rough?), and shape of colony (margin even or serrated? flat?
heaped?).

2. When the cultures you have made have grown out, record their appearance in broth or on slants, using the blank form in
the Results section. Provide all the information the form requires, as in procedure E.l.

Handling and Examining Cultures

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Figure 2.5 Opening a petri plate culture. The bottom is lifted out of the top, and the top is left lying face up on the bench

Figure 2.6 Selecting an isolated bacterial colony from a plate culture surface. The plate has been streaked so that single

colonies have grown in well-separated positions and can easily be picked up.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Results

Record your observations of all cultures in the tables or diagram. Consult section E.l and
figure 2.1 (Examination of Culture Growth) for appropriate descriptive terms.

1. Slant cultures from which you made your inoculations.

Name of Organism

Appearance on Slants

Color

Density

Consistency

E. coli

B. subtilis

S. marcescens

2. Colonies on plate culture of S. marcescens.

Size (mm)*

Color

Density

Consistency

Colony Shape; Surface Texture

*With your ruler, measure the diameter of the average colony on the plate culture by placing the ruler on the bottom of the plate. Hold plate
and ruler against the light to make your readings.

3. The slant cultures you inoculated at the previous session.

Name of Organism

Appearance on Slants

Color

Density

Consistency

E. coli

B. subtilis

S. marcescens

S. marcescens*

noculated from culture plate

If you have made successful transfers and achieved pure cultures, the morphology of your
cultures should match that of the ones you were assigned.

Handling and Examining Cultures

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

4. Refer to the bottom portion of figure 2.1 and shade in the type of growth you observed in your broth cultures

L L

■

r r

E. cofi

B. subtifis

S. marcescens

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

Questions

1. How would you determine whether culture media given to you are sterile before you use them?

2 . What are the signs of growth in a liquid medium?

3. What is the purpose of wiping the laboratory bench top with disinfectant before you begin to handle cultures?

4. Why is it important to hold open culture tubes in a horizontal position?

5 . Why can a single colony on a plate be used to start a pure culture?

Handling and Examining Cultures

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

1. Orientation to the
Microbiology Laboratory

6. Why is it important not to contaminate a pure culture?

7. What is meant by the term colonial morphology}

8. Why should long hair be tied back when one is working in a microbiology laboratory? Can you think of an actual patient
care situation that would call for its control for the same reason?

9. Name at least two kinds of solutions that may be administered to patients by intravenous injection and therefore must be
sterile. How would you know if they were not sterile?

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

2. Microscopic
Morphology of
Microorganisms

Section

Microscopic Morphology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

2. Microscopic
Morphology of
Microorganisms

Name

Class

Date

Exercise

Hanging-Drop and Wet- Mount
Preparations

Now that you have been oriented to some basic tools and methods used in microbiology, we shall
begin our study of microorganisms by learning how to make preparations to study their morphol-
ogy under the microscope.

The simplest method for examining living microorganisms is to suspend them in a fluid
(water, saline, or broth) and prepare either a "hanging drop" or a simple "wet mount."The slide for
a hanging drop is ground with a concave well in the center; the cover glass holds a drop of the sus-
pension. When the cover glass is inverted over the well of the slide, the drop hangs from the glass
in the hollow concavity of the slide (fig. 3.1, step 4). Microscopic study of such a wet preparation
can provide useful information. Primarily, the method is used to determine whether or not an or-
ganism is motile, but it also permits an undistorted view of natural patterns of cell groupings and

Figure 3.1 Hanging-drop preparation using petroleum jelly to seal the cover glass to the slide.

w\ ///-

/j r i »

1 . A thin film of petroleum jelly is placed
around the concave well on the
hollow-ground slide.

2. A loopful of bacterial suspension is
placed in the center of the glass.

3. The hollow-ground slide is inverted
over the drop on the cover glass.
After correct positioning, the slide is
pressed gently against the cover
glass to seal them together with the
petroleum jelly.

4. The hollow-ground slide is reinverted
so that the drop of suspension now
hangs from the cover glass in the
concave well of the slide.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

2. Microscopic
Morphology of
Microorganisms

of individual cell shape. Hanging-drop preparations can be observed for a fairly long time, because
the drop does not dry up quickly. Wet-mounted preparations are used primarily to detect micro-
bial motility rapidly. The fluid film is thinner than that of hanging-drop preparations and therefore
the preparation tends to dry up more quickly, even when sealed. Although the hanging drop is the
classical method for viewing unstained microorganisms, the wet mount is easier to perform and
usually provides sufficient information.

EXPERIMENT 3.1

Preparing a Hanging Drop

Purpose

To observe bacteria in a hanging drop, study their morphology, and determine their motility

Materials

24-hour broth culture of Proteus vulgaris mixed with a light suspension of yeast cells
24-hour broth culture of Staphylococcus epidermidis mixed with a light suspension of yeast cells

2 hollow-ground slides

Several cover glasses

Wire inoculating loop

Bunsen burner or bacterial incinerator

China-marking pencil or permanent marking pen

Petroleum jelly

Procedures

1. Take a cover glass and clean it thoroughly, making certain it is free of grease (the drop to be placed on it will not hang
from a greasy surface). It may be dipped in alcohol and polished dry with tissue, or washed in soap and water, rinsed
completely, and wiped dry

2. Take one hollow-ground slide and clean the well with a piece of dry tissue. Place a thin film of petroleum jelly around
(not in) the concave well on the slide (fig. 3.1, step 1).

3. Gently shake the broth culture of Proteus until it is evenly suspended. Using good aseptic technique, sterilize the wire loop,
remove the cap of the tube, and take up a loopful of culture. Be certain the loop has cooled to room temperature before
inserting it into the broth or it may cause the broth to "sputter" and create a dangerous aerosol. Close and return the tube
to the rack.

4. Place the loopful of culture in the center of the cover glass as in figure 3.1, step 2 (do not spread it around). Sterilize the
loop and put it down.

5. Hold the hollow-ground slide inverted with the well down over the cover glass (fig. 3.1, step 3), then press it down gently
so that the petroleum jelly adheres to the cover glass. Now turn the slide over. You should have a sealed wet mount, with
the drop of culture hanging in the well (fig. 3.1, step 4).

6. Place the slide on the microscope stage, cover glass up. Start your examination with the low-power objective to find the
focus. It is helpful to focus first on one edge of the drop, which will appear as a dark line. The light should be reduced
with the iris diaphragm and, if necessary, by lowering the condenser. You should be able to focus easily on the yeast cells in
the suspension. If you have trouble with the focus, ask the instructor for help.

7. Continue your examination with the high-dry and oil-immersion objectives (be very careful not to break the cover glass
with the latter). Although the yeast cells will be obvious because of their larger size, look around them to observe the
bacterial cells.

8. Make a hanging-drop preparation of the Staphylococcus culture, following the same procedures just described.

9. Record your observations of the size, shape, cell groupings, and motility of the two bacterial organisms in comparison to
the yeast cells.

10. Discard your slides in a container with disinfectant solution.

Hanging-Drop and Wet-Mount Preparations

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

2. Microscopic
Morphology of
Microorganisms

Note: True, independent motility of bacteria depends on their possession of flagella. If so equipped, they can propel
themselves with progressive, directional locomotion (often quite rapidly) . This kind of active motion must be distinguished
from the vibratory movement of organisms or other particles suspended in a fluid. The latter type of motion is called
Broumian movement and is caused by the continuous, rapid oscillation of molecules in the fluid. Small particles of any kind,
including bacteria (whether motile or not), are constantly bombarded by the vibration of the fluid molecules, and so are
bobbed up and down, back and forth. Such movement is irregular and nondirectional and does not cause nonmotile
organisms to change position with respect to other objects around them.

You must be careful not to mistake movement caused by currents in a liquid for true motility. If a wet mount is
not well sealed or contains bubbles, air currents set up reacting fluid currents, and you will see organisms streaming along on
a tide.

Results

1. Make drawings in the following circles to show the shape and grouping of each organism. Indicate below the circle whether
it is motile or nonmotile. How does their size compare with that of the yeast cells in the preparation?

Proteus vulgaris

Staphylococcus epidermidis

Motile

Nonmotile

2. In the following left-hand circle, draw the path of a single bacterium having true motility. In the right-hand circle, draw
the path of a single nonmotile bacterium.

Path of a motile bacterium

Path of a nonmotile bacterium

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

2. Microscopic
Morphology of
Microorganisms

EXPERIMENT 3.2

Preparing a Wet Mount

Purpose

To observe bacteria in a simple wet mount and determine their motility

Materials

24-hour broth culture of Proteus vulgaris mixed with a light suspension of yeast cells
24-hour broth culture of Staphylococcus epidermidis mixed with a light suspension of yeast cells

2 microscope slides

Several cover glasses

Capillary pipettes and pipette bulbs

China-marking pencil or permanent marking pen

Clear nail polish (optional)

Procedures

1. Using a pipette bulb, aspirate a small amount of the Proteus culture with a capillary pipette and place a small drop on a
clean microscope slide (fig. 3.2, step 1).

2. Carefully place a clean cover glass (see Experiment 3.1, procedure 1) over the drop, trying to avoid bubble formation (fig.
3.2, step 2). The fluid should not leak out from under the edges of the cover glass. If it does, wait until it dries before
sealing.

3. If you examine the slide immediately, you need not seal the coverslip. Otherwise, seal around the edges of the coverslip
with a thin film of clear nail polish (fig. 3.2, step 3). Be certain the nail polish is completely dry before examining the slide
under the microscope.

4. Examine the preparation in the same manner as in Experiment 3.1, following procedures 6 through 10. Instead of
focusing on the edge of the drop, however, you may find it helpful to focus first on the left-hand edge of the coverslip.

5. Make a wet-mount preparation of the Staphylococcus culture, following the same procedures just described.

Figure 3.2 Wet-mount preparation.

Using a capillary pipette,

place a small drop of culture
broth on the center of the

slide.

2. Carefully place a clean

coverslip over the drop.
avoiding bubbles.

3. If no fluid has escaped from
under the edges of the
coverslip, seal the
preparation with clear nail
polish. Allow the polish to
dry thoroughly before
examining preparation under
the microscope.

Hanging-Drop and Wet-Mount Preparations

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

2. Microscopic
Morphology of
Microorganisms

Results

1. If you have not performed a hanging drop as in Experiment 3.1, make drawings in the circles on page 28 according to the
directions in the results for that exercise.

2. If you have performed Experiment 3.1, complete the chart.

Hanging Drop

Wet Mount

Organism

Motile (+ or -)

Proteus vulgaris

Staphylococcus epidermidis

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

2. Microscopic
Morphology of
Microorganisms

Questions

1. How does true motility differ from Brownian movement?

2. What morphological structure is responsible for bacterial motility:

3. Why is a wet preparation discarded in disinfectant solution?

4. What is the value of a hanging-drop preparation?

5. What is the value of a wet-mount preparation?

Hanging-Drop and Wet-Mount Preparations

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

2. Microscopic
Morphology of
Microorganisms

Morello-Mizer-Granato:

I. Basic Techniques of 2. Microscopic

Laboratory Manual and Microbiology Morphology of Companies, 2003

Workbook in Microbiology, Microorganisms
7/e

Name

Class Date

Exercise A Simple Stains

As we have seen in Exercise 3, wet mounts of bacterial cultures can be very informative, but they
have limitations. Bacteria bounce about in fluid suspensions with Brownian movement or true
motility, and are difficult to visualize sharply We can see their shapes and observe their activity un-
der a cover glass, but it is difficult to form a complete idea of their morphology

An important part of the problem is the minute size of bacteria. Because they are so
small and have so little substance, they tend to be transparent, even when magnified in subdued
light. The trick, then, is to find ways to stop their motion and tag their structures with something
that will make them more visible to the human eye. Many sophisticated ways of doing this are
known, but the simplest is to smear out a bacterial suspension on a glass slide, "fix" the organisms
to the slide, then stain them with a visible dye (Koch and his coworkers first thought of this more
than 100 years ago).

The best bacterial stains are aniline dyes (synthetic organic dyes made from coal-tar prod-
ucts). When they are used directly on fixed bacterial smears, the contours of bacterial bodies are
clearly seen. These dyes react in either an acidic, basic, or neutral manner. Acidic or basic stains are
used primarily in bacteriologic work. The free ions of acidic dyes are anions (negatively charged)
that combine with cations of a base in the stained cell to form a salt. Basic dyes possess cations (pos-
itively charged) that combine with an acid in the stained material to form a salt. Bacterial cells are
rich in ribonucleic acid (contained in their abundant ribosomes) and therefore stain very well with
basic dyes. Neutral stains are made by combining acidic and basic dyes. They are most useful for
staining complex cells of higher forms because they permit differentiation of interior structures,
some of which are basic, some acidic. Cells and structures that stain with basic dyes are said to be
basophilic. Those that stain with acid dyes are termed acidophilic.

Stained bacteria can be measured for size and are classified by their shapes and group-
ings. Bacteria are so small that their size is most conveniently expressed in micrometers (symbol |xm).
A micrometer is a thousandth part of a millimeter, and 1/10,000 of a centimeter, or 1/25,400 of
an inch. Bacteria vary in length and diameter, the smallest being about 0.5 to 1 |xm long and ap-
proximately 0.5 |xm in diameter, whereas the largest filamentous forms may be as long as 100 fim.
Most of those you will see in this course are at the small end of the scale, measuring about 1 to 3
jxm in length. Small as they are in reality, their images should loom large in your mind as the agents
of infection in patients for whom you will be caring.

Bacteria have rigid cell walls and maintain a constant shape. Therefore, they can be clas-
sified on the basis of their form. Bacteria have three basic shapes: spherical (round), rod shaped, or
spiraled (fig. 4.1). A round bacterium is called a coccus (plural, cocci). A rod-shaped organism is called
a bacillus (plural, bacilli ) or simply a rod. A spiraled bacterium with at least two or three curves in its
body is called a spirillum (plural, spirilla). Long sinuous organisms with many loose or tight coils are
called spirochetes.

The patterns formed by bacterial cells grouping together as they multiply are often char-
acteristic for individual bacterial genera or species. Cocci may occur in pairs (diplococci) , chains
(streptococci), clusters (staphylococci), or packets of four (tetrads), and are seldom found singly.

Rod-shaped bacteria (bacilli) generally occur as individual cells, but they may appear as
end-to-end pairs (diplobacilli) or line up in chains (streptobacilli) . Some species tend to palisade, that

Simple Stains

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

2. Microscopic
Morphology of
Microorganisms

Figure 4.1

Basic shapes and arrangements of bacteria, (a) Cocci. 1 . Diplococci (pairs); 2. Streptococci (chains);

3. Staphylococci (grapelike clusters); 4. Tetrads (packets of four), (b) Bacilli (rods). 1 . Streptobacilli (chains);

2. Palisades; V, X, and Y figures, clubbing; 3. Endospore-forming bacilli (note endospores as small, round, hollow,

unstained areas, within or at one end of bacillary bodies); 4. A bacillus showing pleomorphism (note varying widths

and lengths), (c) Spirals. 1 . Spirilla (short curved or spiraled forms with rigid bodies); 2. Spirochetes (long tightly or

loosely coiled forms with sinuous flexible bodies).

(a)
Cocci

(b)

Bacilli (rods)

is, line up in bundles of parallel bacilli, others may formV, X, orY figures as they divide and split.
Some may show great variation in their size and length (pleomorphism) .

Spiraled bacteria occur singly and usually do not form group patterns. Examine color-
plates 1—8 to see representative examples of bacterial morphology

Purpose

To learn the value of simple stains in studying basic microbial morphology

Materials

24-hour agar culture of Staphylococcus epidermidis
24-hour agar culture of Bacillus subtilis

24-hour agar culture of Escherichia coli

Prepared stained smear of a spiraled organism

Methylene blue

Absolute methanol (if bacterial incinerator used)

Safranin

Toothpicks

Slides

China-marking pencil or permanent marking pen

Procedures

1. Slides for microscopic smears must always be sparkling clean. They may be stored or dipped in alcohol and polished clean
(free of grease) with a tissue or soft cloth.

2. Take three clean slides and with your marking pencil or pen make a circle (about 11/2 cm in diameter) in the center. At
one end of the slide write the initials of one of the three assigned organisms (your three slides should read Se, Bs, and Ec,
respectively).

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

2. Microscopic
Morphology of
Microorganisms

3. Turn the slides over so that the unmarked side is up. (When slides are to be stained, pen or pencil markings should always
be placed on the underside so that the mark will not smear, wash off, or run into the smear itself.)

4. With your inoculating loop, place a loopful of water in the ringed area of the slide. Using proper aseptic transfer
techniques, mix a small amount of bacteria in the water and spread it out. Repeat this step until smears of all three
organisms have been made.

5. Allow the smears to air dry. You should be able to see a thin white film on each slide. If not, add another loopful of water
and more bacteria as in step 4.

6. Heat-fix the smears by passing the slides rapidly through the Bunsen flame three times so that the smears will not wash off.
If a Bunsen burner is not available, fix the smears by placing the slides on a staining rack and flooding them with absolute
methanol. Allow the slides to sit for one minute, then drain off the alcohol and air dry them completely.

7. Place the slides on a staining rack and flood them with methylene blue. Leave the stain on for three minutes.

8. Wash each slide gently with distilled water, drain off excess water, blot (do not rub) with bibulous paper, and let the slides
dry completely in air.

9. While the slides are drying, take two more clean slides and draw a circle on the bottom with your wax pencil or
marking pen.

10. Place a loopful of distilled water (or sterile saline) over the circle on each slide.

11. With the flat end of a toothpick, scrape some material from the surface of your teeth and around the gums. Emulsify the
material in the drop of water on one slide. Repeat this procedure on the other slide.

12. Allow both slides to dry in air; then fix them with heat or methanol. Stain one slide with methylene blue for three
minutes and the other with safranin for three minutes.

13. Wash, drain, and dry the slides as in step 8.

14. Examine all slides, including the prepared stained smear assigned to you, with all three microscope objectives. Record your
results in the table.

Results

Organism in
Broth Culture

Stain

Color

Coccus,
Rod, or Spiral

Cell
Grouping

Diagram

S. epidermidis

B. subtilis

£ coli

Prepared smear

Draw the organisms you saw in the scraping from your teeth

Describe the results you obtained with the two stains used. Which provided the sharpest view?

Simple Stains

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

2. Microscopic
Morphology of
Microorganisms

Questions

1. Define acidic and basic dyes. What is the purpose of each?

2. What is the purpose of fixing a slide that is to be stained?

3. Why are specimens to be stained suspended in sterile saline or distilled water?

4. Which of the microscope objectives is most satisfactory for studying bacteria? Why:

5. How does a stained preparation compare with a hanging drop for studying the morphology and motility of bacteria?

6. List and define the basic shapes of bacteria. What are the dimensions of an average bacillus in micrometers? In centimeters?

7. List at least three types of bacteria whose names reflect their shapes and arrangements, and state the meaning of each name

8. For what reason do we need to stain bacteria?

9. Examine colorplates 1—8 and describe the morphology of the bacteria in each one.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

Section

Differential Stains

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

Name

Class

Date

Exercise

Gram Stain

The simple staining procedure performed in Exercise 4 makes it possible to see bacteria clearly, but
it does not distinguish between organisms of similar morphology.

In 1884, a Danish pathologist, Christian Gram, discovered a method of staining bacteria
with pararosaniline dyes. Using two dyes in sequence, each of a different color, he found that bac-
teria fall into two groups. The first group retains the color of the primary dye: crystal violet (these
are called gram positive). The second group loses the first dye when washed in a decolorizing solu-
tion but then takes on the color of the second dye, a counterstain, such as safranin or carbol fuchsin
(these are called gram negative). An iodine solution is used as a mordant (a chemical that fixes a dye in
or on a substance by combining with the dye to form an insoluble compound) for the first stain.

The exact mechanism of action of this staining technique is not clearly understood.
However, it is known that differences in the biochemical composition of bacterial cell walls paral-
lel differences in their Gram-stain reactions. Gram-positive bacterial walls are rich in tightly linked
peptidoglycans (protein-sugar complexes) that enable cells to resist decolorization. Gram-negative
bacterial walls have a high concentration of lipids (fats) that dissolve in the decolorizer (alcohol,
acetone, or a mixture of these) and are washed away with the crystal violet. The decolorizer thus
prepares gram-negative organisms for the counterstain.

The Gram stain is one of the most useful tools in the microbiology laboratory and is
used universally. In the diagnostic laboratory, it is used not only to study microorganisms in cul-
tures, but it is also applied to smears made directly from clinical specimens. Direct, Gram-stained
smears are read promptly to determine the relative numbers and morphology of bacteria in the
specimen. This information is valuable to the physician in planning the patient's treatment before
culture results are available. It is also valuable to microbiologists, who can plan their culture pro-
cedures based on their knowledge of the bacterial forms they have seen in the specimen.

The numerous modifications of Gram's original method are based on the concentration
of the dyes, length of staining time for each dye, and composition of the decolorizer. Hucker's mod-
ification, to be followed in this exercise, is commonly used today. The choice of decolorizing agent
depends on the speed wanted to accomplish this step. The slowest agent, 95% ethyl alcohol, is used
in this exercise to permit the student to gain experience with decolorization. Acetone is the fastest
decolorizer, while an equal mixture of 95% ethyl alcohol and acetone acts with intermediate speed.
The acetone-alcohol combination is probably the most popular in diagnostic laboratories.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

Purpose

Materials

To learn the Gram-stain technique and to understand its value in the study of bacterial
morphology

24-hour agar culture of:

Staphylococcus epidermidis

Enterococcus faecalis

Neisseria sicca

Saccharomyces cerevisiae (yeast)

Bacillus subtilis

Escherichia coli

Proteus vulgaris
Specimen of simulated pus from a postoperative wound infection
Hucker's crystal violet
Gram's iodine
Ethyl alcohol, 95%
Safranin
Slides
Marking pen or pencil and slide labels

Procedures

Following the procedures outlined in Exercise 4, steps 1 through 6 (pages 34—35), prepare a fixed smear of each culture
and of the simulated clinical specimen. You will have 7 smears labeled Se, Ef, Ns, Sc, Bs, Ec, Pv, and pus. On the
underside of each slide, make a code mark so that you can identify the slides after staining.
Stain each smear by the following procedures (this is Hucker's modification of the Gram stain):

a. Flood slide with crystal violet. Allow to stand for one minute (check with instructor; time varies with different batches
of stain) .

b. Wash off with tap water.

c. Flood with Gram's iodine (a mordant). Leave for one minute.

d. Wash off with tap water.

e. Decolorize with alcohol (95%) until no more color washes off (usually 10—20 seconds). This is a most critical step. Be
careful not to overdecolorize, as many gram-positive organisms may lose the violet stain easily and thus appear to be
gram negative after they are counterstained.

f. Wash off with tap water.

g. Apply safranin (the counterstain) for one minute,
h. Wash off with tap water.

Drain and blot gently with bibulous paper. Air dry the slide thoroughly before you examine the preparation under the

microscope.
3. When slides are dry, label them as shown:

Name

Date

Organism
(or specimen)

Gram Stain

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

4. Examine all slides under oil with the oil-immersion objective.

5. Record observations in table under Results.

6. Examine colorplates 1—6 and 8, noting which bacteria are gram positive or gram negative.

Results

Name of Organism

Color
(Purple or Pink)

Gram-Stain Reaction
(+ or -)

Diagram

Agar cultures

Pus specimen: Describe type(s)
of organisms seen

Basic Techniques of Microbiology

I. Basic Techniques of

Morello-Mizer-Granato:

Laboratory Manual and Microbiology

Workbook in Microbiology,

7/e

3. Differential Stains

Questions

1. What is the function of the iodine solution in the Gram stain? If it were omitted, how would staining results be affected?

2. What is the purpose of the alcohol solution in the Gram stain?

3. What counterstain is used? Why is it necessary? Could colors other than red be used?

4. On the basis of Gram reaction, can you distinguish species of:

Staphylococcus and Streptococcus':

Staphylococcus and Neisseria':

Escherichia and Proteus?

Escherichia and Bacillus?

5. What is the size of staphylococci in micrometers? In centimeters?

Gram Stain

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

6 . What is the advantage of the Gram stain over the simple stain?

7. In what kind of clinical situation would a direct smear report from the laboratory be of urgent importance?

8. What is the current theory about the mechanism of the Gram-stain reaction?

9. Describe at least two conditions in which an organism might stain gram variable.

Basic Techniques of Microbiology

I. Basic Techniques of

Morello-Mizer-Granato:

Laboratory Manual and Microbiology

Workbook in Microbiology,

7/e

3. Differential Stains

Name

Class Date

Exercise A Acid-Fast Stain

Members of the bacterial genus Mycobacterium contain large amounts of lipid (fatty) substances
within their cell walls. These fatty waxes resist staining by ordinary methods. Because this genus
contains species that cause important human diseases (the agent of tuberculosis is a Mycobacterium),
the diagnostic laboratory must use special stains to reveal them in clinical specimens or cultures (see
also Exercise 29).

When these organisms are stained with a basic dye, such as carbolfuchsin, applied with
heat or in a concentrated solution, the stain can penetrate the lipid cell wall and reach the cell cy-
toplasm. Once the cytoplasm is stained, it resists decolorization, even with harsh agents such as
acid-alcohol, which cannot dissolve and penetrate beneath the mycobacterial lipid wall. Under
these conditions of staining, the mycobacteria are said to be acid fast (see colorplate 9). Other bac-
teria whose cell walls do not contain high concentrations of lipid are readily decolorized by acid-
alcohol after staining with carbolfuchsin and are said to be nonacid fast. One medically important
genus, Nocardia, contains species that are partially acid fast. They resist decolorization with a weak
(1%) sulfuric acid solution, but lose the carbolfuchsin dye when treated with acid-alcohol. In the
acid- fast technique, a counterstain is used to demonstrate whether or not the fuchsin has been de-
colorized within cells and the second stain taken up.

The original technique for applying carbolfuchsin with heat is called the Ziehl-Neelsen
stain, named after the two bacteriologists who developed it in the late 1800s. The later modifica-
tion of the technique employs more concentrated carbolfuchsin reagent rather than heat to ensure
stain penetration and is known as the Kinyoun stain. A more modern fluorescence technique is used
in many clinical laboratories today. In this method, the patient specimen is stained with the dye au-
ramine, which fluoresces when it is exposed to an ultraviolet light source. Because any acid- fast
bacilli take up this dye and fluoresce brightly against a dark background when viewed with a flu-
orescence microscope, the smear can be examined under 400 X (high-dry) magnification rather
than 1,000X (oil-immersion) magnification. As a result, the slide can be screened more quickly for
the presence of acid-fast bacilli (see colorplate 9).

Acid-Fast Stain

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

Purpose

Materials

To learn the acid-fast technique and to understand its value when used to stain a clinical
specimen

A young slant culture of Mycobacterium phlei (a saprophyte)

24-hour broth culture of Bacillus subtilis

A sputum specimen simulating that of a 70-year-old man from a nursing home, admitted to the
hospital with chest pain and bloody sputum

Gram-stain reagents

Kinyoun's carbolfuchsin

Acid-alcohol solution

Methylene blue

Slides

Diamond glass-marking pencil

Marking pencil or pen

2 X 3-cm filter paper strips

Slide rack

Forceps

Procedures

1 . Prepare two fixed smears of each culture and two of the simulated sputum. In practice, the smears are fixed with methanol
for one minute or are heat-fixed at 65 to 75 °C to be certain any tuberculosis bacilli present are killed. To make smears of
the agar slant culture, first place a drop of water on the slide, and then emulsify a small amount of the colonial growth in
this drop.

2. Ring and code one slide of each pair with your marking pencil or pen, as usual.

3. The other slide of each pair must be ringed and coded with a diamond pencil. This device scratches the glass indelibly, so
that the marks remain even during the prolonged staining process.

4. Gram stain the set of slides marked with the pencil or pen in step 2.

5. Stain the diamond-scratched slides by the Kinyoun technique:

a. Place the slides on a slide rack extended over a metal staining tray, if available.

b. Cover smear with a 2 X 3-cm piece of filter paper to hold the stain on the slide and to filter out any undissolved dye
crystals .

c. Flood the slide with concentrated carbolfuchsin solution and allow to stand for five minutes.

d. Use forceps to remove filter paper strips from slides and place the strips in a discard container. Rinse slides with water
and drain.

e. Cover smears with acid-alcohol solution and allow them to stand for two minutes.

f. Rinse again with water and drain.

g. Flood smear with methylene blue and counterstain for one to two minutes,
h. Rinse, drain, and air dry.

6. Examine all slides under oil immersion and record observations under Results. See colorplate 9 for examples.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

Results

Name of Organism

Visible in

Gram Stain*

(Yes, No)

Gram-Stain
Reaction
(If Visible)

Visible in

Acid-Fast Stain

(Yes, No)

Color in

Acid- Fast

Stain

Acid- Fast
Reaction
(If Visible)

Cultures

Sputum specimen
(describe organism)

Note: Some saprophytic mycobacteria may stain weakly gram positive or appear beaded in Gram-stained smears

Questions

1. What is a differential stain? Name two examples of such stains

2. Is a Gram stain an adequate substitute for an acid- fast stain? Why?

3. When is it appropriate to ask the laboratory to perform an acid-fast stain?

Acid-Fast Stain

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

4. In light of the clinical history (p. 41) and your observations of the Gram and acid-fast smears, what is your tentative
diagnosis of the patient's illness? How should this preliminary laboratory diagnosis be confirmed?

5. Are saprophytic mycobacteria acid fast?

6. Does the presence of acid-fast organisms in a clinical specimen always suggest serious clinical disease?

7. How should the acid-fast stain of a sputum specimen from a patient with suspected pulmonary Nocardia infection be
performed?

Basic Techniques of Microbiology

I. Basic Techniques of

Morello-Mizer-Granato:

Laboratory Manual and Microbiology

Workbook in Microbiology,

7/e

3. Differential Stains

Name

Class Date

Exercise

lai stains

Some bacteria have characteristic surface structures (such as capsules or flagella) and internal com-
ponents (e.g., endospores) that may have taxonomic value for their identification. When it is neces-
sary to demonstrate whether or not a particular organism possesses a capsule, is flagellated, or forms
endospores, special staining techniques must be used.

Many bacterial species possess an exterior capsule composed of carbohydrate or glyco-
protein. A few pathogenic species, such as Streptococcus pneumoniae (the leading cause of bacterial
pneumonia) and Klebsiella pneumoniae (a cause of pneumonia and wound and urinary tract infec-
tions) have well-developed capsules that contribute to virulence by preventing phagocytic cells
from ingesting and killing the bacteria. Capsules do not retain staining agents, but can be made vis-
ible microscopically by the use of a simple, nonspecific negative staining technique. A small drop of
India ink or nigrosin is added to a suspension of bacterial cells on a glass slide. These agents do not
penetrate the cells (or stain the surrounding capsules), but serve as background stains, which out-
line the capsules. When the slide is dry, the preparation is stained with safranin, which penetrates
and stains the cells. After this treatment, the bacteria appear pink and their capsules stand out
sharply as clear, unstained zones against the dark background of India ink or nigrosin.

In the animal body, carbohydrate or protein capsular components are recognized as for-
eign substances (referred to as antigens). In response to the presence of capsular antigens, antibod-
ies are produced that react with (bind to) the capsule. The binding of antibodies to antigen (called
an antigen-antibody reaction) greatly enhances phagocytosis. Many variations in the chemical
structure of capsular antigens exist, even within a single bacterial species, and each variation stim-
ulates the production of antibodies specific for that capsular type. For example, more than 80 cap-
sular types of S. pneumoniae have been identified.

As you will learn in Exercise 19, serological tests, which make use of these specific
antigen-antibody reactions, are often used for rapid and accurate identification of bacteria present
in clinical specimens. Encapsulated bacteria may be identified serologically by one such test, called
the quellung reaction. In this test, unknown bacteria from the clinical specimen are placed on a slide
and antiserum (serum containing known antibodies) is added. When the preparation is viewed un-
der the microscope, if an antigen- antibody reaction has occurred between antibodies in the test
serum and capsular antigens on the bacterial cells (a positive test), the capsules become much more
distinct and appear to swell (see colorplate 10).

Bacterial flagella are tiny hairlike organelles of locomotion. Originating in the cytoplasm
beneath the cell wall, they extend beyond the cell, usually equaling or exceeding it in length. Their
fine protein structure requires special staining techniques for demonstrating them with the light
microscope. Since not all bacteria possess flagella, their presence, numbers, and pattern or arrange-
ment on the cell may provide clues to identification of species (fig. 7.1). For example, Vibrio cholerae
and some species of Pseudomonas have a single polar flagellum at one end of the cell (they are said
to be monotrichous) , some spirillae display bipolar tufts of flagella (the arrangement is called lophotri-
chous), while many Proteus species have multiple flagella surrounding their cells (in a peritrichous pat-
tern) . Some flagellar stains employ rosaniline dyes and a mordant, applied to a bacterial suspension
fixed in formalin and spread across a glass slide. The formalin links to, or "fixes," the flagellar and
other surface protein of the cells. The dye and mordant then precipitate around these "fixed" sur-
faces, enlarging their diameters, and making flagella visible when viewed under the microscope. In

Special Stains

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

Figure 7.1 Arrangements of bacterial flagella.

(a) Monotrichous
(polar)

(ta) Lophotrichous

(d) Amphitnchous

another method, a ferric-tannate mordant and a silver nitrate solution are applied to a bacterial sus-
pension. The resulting dark precipitate that forms on the bacteria and their flagella allows them to
be easily visualized under the microscope. This silver-plating technique is also used to stain the very
slender spirochetes.

Among bacteria, endospore formation is most characteristic of two genera, Bacillus and
Clostridium. The process of sporulation involves the condensation of vital cellular components
within a thick, double-layered wall enclosing a round or ovoid inner body. The activities of the
vegetative (actively growing) cell slow down, and it loses moisture as the endospore is formed.
Gradually, the empty bacterial shell falls away. The remaining endospore is highly resistant to en-
vironmental influences, representing a resting, protective stage. Most disinfectants cannot perme-
ate it, and it resists the lethal effects of drying, sunlight, ultraviolet radiation, and boiling. It can be
killed when dry heat is applied at high temperatures or for long periods, by steam heat under pres-
sure (in the autoclave), or by special sporicidal (endo spore-killing) disinfectants. Because bacterial
endospore walls are not readily permeated by materials in solution, the inner contents of the en-
dospores are not easily stained by ordinary bacterial dyes. When sporulating bacteria are Gram
stained, the endospores forming within the vegetative cells appear as empty holes in the bacterial
bodies (see colorplate 8). Depending on their location within the cell, the endospores are referred
to as terminal (at the very end of the vegetative cell), subterminal (near, but not at, the end of the
cell), or central. Free endospores are invisible when stained with the Gram stain or appear as faint
pink rings. To demonstrate the inner contents of bacterial endospores, you must use a special stain-
ing technique that can drive a dye through the endospore coat.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

EXPERIMENT 7.1

Staining Bacterial Endospores (Schaeffer-Fulton Method)

Purpose

To learn a technique for staining bacterial endospores

Materials

3- to 5-day-old agar slant culture of Bacillus subtilis

24-hour-old slant culture of Staphylococcus epidermidis

Malachite green solution

Safranin solution

Slides

Diamond glass-marking pencil

Slide rack

500-ml beaker

Tripod with asbestos mat

Forceps

Procedures

1 . Place a drop of water on a slide. Emulsify a small amount of each of the slant cultures in the same drop of water.

2. Ring and code the slide with the diamond marking pencil.

3. Stain the slide by the endospore stain:

a. Place the slides on a slide rack extended across a beaker of boiling water held on a tripod (an electric burner may be
used instead of a Bunsen burner). An asbestos mat should protect the beaker from the Bunsen flame beneath (fig. 7.2).

b. Flood slide with malachite green and allow to steam gently for 5 to 10 minutes. The stain itself should not boil; if it does,
reduce the heat. If the stain appears to be evaporating and drying too rapidly, add a little more. Keep the slide flooded.

c. Allow the slide to cool slightly, then use forceps to drain the slide over a sink or staining tray and rinse with water for
about 30 seconds until no more green washes out.

d. Counterstain the preparation with safranin for 30 seconds, then rinse again with tap water. Blot or air-dry the slide.

e. Examine the smear under the oil-immersion objective and record your observations under Results.

Figure 7.2 A simple method for applying heat when staining smears, using the endospore stain technique.

Special Stains

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

Results

1. In the circle, make a sketch of your microscopic observations. Note the difference between the staining properties of the
staphylococci and the endospores. Use colored pencils if they are available. Indicate the color of the spores in contrast to
the vegetative cells.

What is the location of the endospore within the bacterial cell (e.g., terminal, subterminal, central):

EXPERIMENT 7.2

FLAGELLA AND CAPSULE STAINS

Purpose

Materials

To examine microorganisms stained by various methods to demonstrate their flagella and
capsules

Prepared slides stained to reveal:

Bacterial flagella (monotrichous, lophotrichous, and peritrichous or other patterns
of arrangement)

Bacterial capsules (direct or negative staining)

Procedures

1. Examine the prepared slides and make drawings of your observations.

2. Review assigned reading and be prepared to discuss the morphological classification of bacteria.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

Results

Record and diagram your observations

Bacterial endospores

Bacterial flagella

Bacterial capsules

Color of

Endospores

Flagella

Capsules

Bacillus vegetative cells

Cells

Stap/iy/ococcus cells

Background

Describe the arrangement of flagella you observed:

Questions

1. Why must special stains be used to visualize bacterial capsules, flagella, and endospores?

2. Why is it important to know whether or not bacterial cells possess capsules, flagella, or endospores?

3. What do endospore stains have in common with the Ziehl-Neelsen acid- fast stain?

Special Stains

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

3. Differential Stains

4. Is bacterial speculation a reproductive process? Explain.

5. Why is it important to determine the location of the endospore within the bacterial cell?

6. Can you relate endospore staining to endospore survival in hospital or other environments?

7. What is a negative stain?

8. Describe a flagella stain and explain the principle of its action.

9. Compare the usefulness of a flagella stain with that of the hanging-drop or wet-mount preparation

10. What is the quellung reaction? How might it be used to rapidly identify certain bacteria directly in clinical specimens?

11. Of what value is a capsule to a microorganism?

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Section

Cultivation of
Microorganisms

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Name

Class

Date

Exercise

Culture Media

Once the microscopic morphology and staining characteristics of a microorganism present in a
clinical specimen are known, the microbiologist can make appropriate decisions as to how it should
be cultivated and what biological properties must be demonstrated to identify it fully

First, a suitable culture medium must be provided, and it must contain the nutrients es-
sential for the growth of the microorganism to be studied (see Exercise 2). Most media designed
for the initial growth and isolation of microorganisms are rich in protein components derived from
animal meats. Many bacteria are unable to break down proteins to usable forms and must be pro-
vided with extracted or partially degraded protein materials (peptides, proteoses, peptones, amino
acids). Meat extracts, or partially cooked meats, are the basic nutrients of many culture media.
Some carbohydrate and mineral salts are usually added as well. Such basal media may then be sup-
plemented, or enriched, with blood, serum, vitamins, other carbohydrates and mineral salts, or par-
ticular amino acids as needed or indicated.

In this exercise, we will prepare a basic nutrient broth medium and also a nutrient agar
from commercially available dehydrated stock mixtures containing all necessary ingredients except
water. The term nutrient broth (or agar) refers specifically to basal media prepared from meat extracts,
with a few other basic ingredients, but lacking special enrichment. We will also see how liquid and
agar media are appropriately dispensed in flasks, bottles, or tubes for sterilization before use, and
how a sterile agar medium is then poured aseptically into petri dishes.

Purpose

To learn how culture media are prepared for use in the microbiology laboratory

Materials

Dehydrated nutrient agar

Dehydrated nutrient broth

A balance, and weighing papers

A 1 -liter Erlenmeyer flask, cotton plugged or screw capped

A 1 -liter glass beaker

A 1 -liter graduated cylinder

Glass stirring rods (at least 10 cm long)

10-ml pipettes (cotton plugged)

Test tubes (screw capped or cotton plugged)

Petri dishes

Aspiration device for pipetting

Procedures

1. Read the label on a bottle of dehydrated nutrient agar. It specifies the amount of dehydrated powder required to make
1 liter (1,000 ml) of medium. Calculate the amount needed for 1/2 liter and weigh out this quantity.

2. Place 500 ml of distilled water in an Erlenmeyer flask. Add the weighed, dehydrated agar while stirring with a glass rod to
prevent lumping.

3. Set the flask on a tripod over an asbestos mat. Using a Bunsen flame, slowly bring the rehydrated agar to a boil. Stir often.
An electric hot plate may be used instead of a Bunsen burner.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Figure 8.1 Preparing a plate of agar medium by pouring melted sterile agar into it

When the agar mixture is completely dissolved, remove the flask from the flame or hot plate, close it with the cotton plug
or cap, and give it to the instructor to be sterilized in the autoclave.

5. While the flask of agar is being sterilized, prepare 500 ml of nutrient broth, adding the weighed dehydrated powder to the
water in a beaker for reconstitution and dissolution.

6. Bring the reconstituted broth to a boil, slowly. When fully dissolved, remove from flame or electric burner and allow to
cool a bit.

7. The instructor will demonstrate the use of the pipetting device. Do not pipette by mouth. Using a pipette, dispense 5-ml
aliquots of the broth into test tubes (plugged or capped). The instructor will collect the tubes and sterilize them.

8. When the flask of sterilized agar is returned to you, allow it to cool to about 50°C (the agar should be warm and melted,
but not too hot to handle in its flask). Remove the plug or cap with the little finger of your right hand and continue to
hold it until you are sure it won't have to be returned to the flask. Quickly pour the melted, sterile agar into a series of
petri dishes. The petri dish tops are lifted with the left hand, and the bottoms are filled to about one-third capacity with
melted agar (fig. 8.1). Replace each petri dish top as the plate is poured. When the plates are cool (agar solidified), invert
them to prevent condensing moisture from accumulating on the agar surfaces.

9. Place inverted agar plates and tubes of sterilized nutrient broth (cooled after their return to you) in the 35°C incubator.
They should be incubated for at least 24 hours to ensure they are sterile (free of contaminating bacteria) before you use
them in Exercise 9.

Results

After at least 24 hours of incubation at 35°C, do your prepared plates and broths appear to be sterile?

Record your observation of their physical appearance

Plates:

Broths:

Culture Media

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Morello-Mizer-Granato:

I. Basic Techniques of

4. Cultivation of

Laboratory Manual and Microbiology Microorganisms Companies, 2003

Workbook in Microbiology,
7/e

Questions

1. Define a culture medium

2. Discuss some of the physical and chemical factors involved in the composition, and in the preparation, of a culture medium.

Nutrient ingredients:

pH and buffering:

Heat (to reconstitute)

Heat (to sterilize):

Other:

3. At what temperature does agar solidify:

At what temperature does agar melt?

4. What would happen to plates poured with agar that is too hot?

Could they be used?

5. What would happen to plates poured with agar that is too cool?

Could they be used?

Culture Media

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

6. Why are culture media sterilized before use:

7. Discuss the relative value of broth and agar media in isolating bacteria from mixed cultures.

8. Are nutrient broths and agars, as you have prepared them, suitable for supporting growth of all microorganisms pathogenic
for humans? Explain your answer.

Morello-Mizer-Granato:

I. Basic Techniques of

4. Cultivation of

Laboratory Manual and Microbiology Microorganisms Companies, 2003

Workbook in Microbiology,
7/e

Name

Class Date

Exercise ^) Streaking Technique to Obtain

Pure Cultures

The skin and many mucosal surfaces of the human body support large numbers of microorganisms
that comprise the normal, or indigenous, flora. When clinical specimens are collected from these
surfaces and cultured, any pathogenic microorganisms being sought must be recognized among,
and isolated from, other harmless organisms. Colonies of the pathogenic species must be picked
out of the mixed culture and grown in isolated pure culture. The microbiologist can then proceed
to identify the isolated organism by examining its biochemical and immunological properties. Pure
culture technique is critical to successful, accurate identification of microorganisms (see colorplates
11-13).

Purpose A. To isolate pure cultures from a specimen containing mixed flora

B. To culture and study the normal flora of the mouth

Materials Nutrient agar plates*

Blood agar plates

Sterile swabs

A mixed broth culture containing Serratia marcescens (pigmented), Escherichia coli, and
Staphylococcus epidermidis

A demonstration plate culture made from this broth, showing colonies isolated by good
streaking technique

Glass slides

Gram-stain reagents

*lf the plates you prepared in Exercise 8 are sterile and in good condition, they may be used in this experiment.

Procedures

A. Streaking a Mixed Broth Culture for Colony Isolation

1. Make certain the contents of the broth culture tube are evenly mixed.

2. Place a loopful of broth culture on the surface of a nutrient agar plate, near but not touching the edge. With the loop flat
against the agar surface, lightly streak the inoculum back and forth over approximately one-eighth the area of the plate; do
not dig up the agar (fig. 9.1, area A).

3. Sterilize the loop and let it cool in air.

4. Rotate the open plate in your left hand so that you can streak a series of four lines back and forth, each passing through
the inoculum and extending across one side of the plate (fig. 9.1, area B).

5. Sterilize the loop again and let it cool in air.

6. Rotate the plate and streak another series of four lines, each crossing the end of the last four streaks and extending across
the adjacent side of the plate (fig. 9.1, area C).

7. Rotate the plate and repeat this parallel streaking once more (fig. 9.1, area D).

8. Finally, make a few streaks in the untouched center of the plate (fig. 9.1, area E). Do not touch the original inoculum.

9. Incubate the plate (inverted) at 35°C.

Streaking Technique to Obtain Pure Cultures

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Figure 9.1 Diagram of plate streaking technique. The goal is to thin the numbers of bacteria growing in each successive area of

the plate as it is rotated and streaked so that isolated colonies will appear in sections D and E.

B. Taking a Culture from the Mouth

1. Rotate a sterile swab over the surface of your tongue and gums.

2. Roll the swab over a small l^-cm square of surface of a blood agar plate, near but not touching one edge (see fig. 9.1, area
A). Rotate the swab fully in this area.

3. Discard the swab in a container of disinfectant.

4. Using an inoculating loop, streak the plate as in figure 9.1.

5. Incubate the plate (inverted) at 35°C.

Results

A. Examination of Plate Streaked from Mixed Broth Culture

1. Examine the incubated nutrient agar plate carefully. Compare your streaking with that illustrated in figure 9.2a and b
Make a drawing showing the intensity of growth in each streaked area.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Figure 9.2 Plate streaking, (a) Notice how the proper technique is designed to yield isolated colonies in areas D and E. (b) Poor

streaking does not provide separation of colonies.

2. Describe each different type of colony you can distinguish.

3. Make a Gram stain of one isolated colony of each type present. Also prepare a Gram stain of the growth in the area where
the initial inoculum was placed. (Note: when a stain is to be made of colonies on an agar medium, place a loopful of
sterile water or saline on the slide first and then emulsify the picked growth in this drop. Allow to air dry, fix the slide by
heat or methanol, and stain.)

4. Record your observations in the table provided.

Single Colony

Colony
Morphology

Pigment

Gram Reaction

Microscopic
Morphology

Serratia marcescens

Escherichia coli

Staphylococcus epidermidis

Area of initial inoculum

Note: Keep the nutrient agar plate. You will work with it again in the next exercise

Streaking Technique to

in Pure Cultures

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

B. Examination of Mouth Culture on Blood Agar Plate

1. How many different types of colonies can you find on the blood agar plate?
Describe each.

2. Make a Gram stain of each of three different colonies. Record the Gram reaction of each, and sketch its microscopic
morphology in the circles.

Gram
reaction

3. Discard the blood agar plate in a container marked CONTAMINATED.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Questions

1 . When an agar plate is inoculated, why is the loop sterilized after the initial inoculum is put on?

2. Define a pure culture, a mixed culture.

3. Define a bacterial colony. List four characteristics by which bacterial colonies may be distinguished

4. Why should a petri dish not be left open for any extended period?

Why does the streaking method you used to inoculate your plates result in isolated colonies?

Streaking Technique to

in Pure Cultures

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

6. Why is it necessary to isolate individual colonies from a mixed growth?

7. Why was a blood agar, rather than a nutrient agar, plate used for the culture from your mouth?

8. Are the large numbers of microorganisms found in the mouth cause for concern? Explain

9. How do microorganisms find their way into the mouth?

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Name

Class

Date

Exercise

Pour-Plate and Subculture Techniques

An alternative method for using agar plates to obtain isolated colonies, other than streaking their
surfaces, is to prepare a "pour plate." In this case, an aliquot of the specimen to be cultured is placed
in the bottom of an empty, sterile petri dish, then melted, cooled agar is poured over it. Quickly,
before the agar cools, the plate is gently rocked to disperse the inoculum. When the agar has so-
lidified and the plate is incubated, any bacteria present in the specimen will grow wherever they
have been embedded within the agar layer or localized on its surface. Their colonies will be iso-
lated and can be removed from subsurface positions by inserting the inoculating loop or a straight
wire into the agar. To prepare pour plates, the inoculum must be a liquid specimen or culture. If it
is not, it must be suspended in sterile fluid before being placed in the petri dish.

Another method for preparing a pour plate is to inoculate the specimen or culture di-
rectly into the tube of melted, cooled, but not yet solidified agar. Mix it by rolling it back and forth
between the outstretched fingers of both hands, and pour the inoculated agar into a sterile petri
dish. These steps must be performed quickly before the agar cools enough to harden.

When primary isolation plates have been properly poured or streaked, individual
colonies can be picked up on an inoculating loop or straight wire and inoculated to fresh agar or
broth media. These new pure cultures of isolated organisms are called subcultures. If they are indeed
pure and do not contain mixtures of different species, they can be identified in stepwise procedures
as you will see in later exercises.

Purpose

Materials

A. To learn the pour-plate technique for obtaining isolated colonies

B. To obtain isolated colonies from streaked plate cultures and grow them as pure subcultures

Tubed nutrient agar (10 ml per tube)

Sterile petri dishes

Sterile 1-ml pipettes (cotton plugged)

Mixed broth culture containing Escherichia coli and Staphylococcus epidermidis

Nutrient agar plates (prepared in Exercise 8)

Nutrient agar broth (prepared in Exercise 8)

Nutrient agar plate cultures streaked in Exercise 9, containing isolated colonies of three
bacterial species

Procedures

A. Pour-Plate Technique

1. Place a tube of sterile nutrient agar in a boiling water bath. (A simple water bath can be set up by placing a glass beaker or
tin can half filled with water on a tripod over a Bunsen flame. An asbestos mat must be used under glass vessels. The water
should be kept at a steady but not rapid boil. Keep the water level at the halfway mark. An electric burner may be used
instead.)

2. When the agar is liquefied, remove the tube and allow it to cool to about 50°C.

3. Place an empty sterile petri dish before you, top side up.

4. Remove a sterile 1-ml pipette from its container, keeping your fingers on the plugged mouth end.

Pour-Plate and Subculture Techniques

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Figure 10.1 Pipetting. The pressure of the finger on the mouth of the pipette controls the flow and measurement of the fluid.

Notice that the cap from the open tube is held by the little finger of the right hand.

5. Pick up the mixed broth culture in the other hand, remove its closure with the little finger of the hand holding the pipette
(do not touch the pipette to anything), and insert the pipette into the broth.

6. Holding the tube and pipette vertically, poise your index finger over the pipette mouth. Allow the pipette to fill to the
level of the broth in the tube and then close off its mouth with your finger (there should be about 0.3 to 0.4 ml of culture
in the pipette).

7. Keeping your finger pressed on its top, raise the pipette until the tip is free of the broth and then slowly allow the material
in the pipette to run back into the tube until only the last 0.1 ml remains. Now press your finger tightly to close the
pipette's mouth and prevent further dripping (fig. 10.1). Never use your mouth to draw fluid into a pipette.

8. Before you withdraw the pipette from the tube, touch its tip against the dry inner wall to remove any drop hanging
from it.

9. Withdraw the closed pipette, replace the tube closure, and put the tube down in the rack.

10. Now, with your free hand, remove the top of the petri dish (do not put it down), place the tip of the pipette against the
bottom of the dish, release your finger from the mouth, and let 0.1 ml of broth culture run into the plate bottom.

11. Replace the dish top and discard the pipette into a container of disinfectant.

12. Pick up the tube of melted, cooled agar, remove its closure, and put it down on the bench top.

13. With your free hand, remove the top of the petri dish (again, do not put it down). Quickly pour the agar into the dish.

14. Replace the petri dish cover (the tube may be set aside for washing). Gently rock the closed dish, or rotate it in circular
fashion on the bench top, being careful not to allow the still melted agar to wave up over the edge of the bottom half or
onto the cover.

15. Let the agar solidify without further disturbance. When it is quite firm (about 30 minutes), invert the plate and place it in
the 35 °C incubator.

B. Subculture Technique (Picking Isolated Colonies for Pure Culture)

1. Look again at figure 2.6 in Exercise 2. This figure illustrates the correct method of picking a single colony from the surface
of a streaked plate.

2. Now open the nutrient agar plate you streaked in Exercise 9 from a mixed broth culture containing three organisms. Hold
the exposed agar surface in good light so that you can see all facets of individual isolated colonies.

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

3. With your sterilized, cooled loop held steady in your other hand, bring the loop edge down against the top surface of one
isolated colony you have selected for pure subculture. Withdraw the charged loop (don't touch it to anything!) and close
the streaked plate.

4. Inoculate a fresh, sterile nutrient broth by gently rubbing the charged loop against the inner wall of the tube, just beneath
the fluid surface. When you bring the loop out of the tube, be sure it holds some of the broth.

5. Now use the loop to inoculate a fresh nutrient agar plate. Rub the inoculum onto a small area near the edge, sterilize the
loop, and then go back and complete the streaking of the plate by using the technique illustrated in figure 9.1.

6. Inoculate two more agar plates, each with a different type of colony picked from your previous plate culture.

7. Incubate your new plate cultures (inverted) and broth cultures at 35°C.

Results

A. Examination of Pour Plate

Diagram the distribution of colonies you can see in your pour-plate culture (surface and sub-
surface locations, separation). Indicate any colonial distinctions you can recognize.

B. Examination of Streaked Plate Subcultures

1. Examine your streaked nutrient agar plate subcultures and determine whether you have obtained pure cultures. In the
following table, indicate the size, shape, and pigmentation of colonies on each plate. Make Gram stains of colonies on each
subculture plate and record Gram-stain reactions in the table.

Organism

Colony Size
(mm, diameter)

Colony
Shape

Pigment
Color

Gram-Stain
Reaction

Microscopic
Morphology

Escherichia coli

Serratia marcescens

Staphylococcus epidermidis

2. Examine your nutrient broth subcultures. Make Gram stains to determine whether they are pure. Describe your
microscopic observations of each broth subculture.

3. Are the organisms recovered in your plate and broth cultures the same as those you originally recorded in Exercise 9?

If not, specify the differences:

Pour-Plate and Subculture Techniques

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Questions

1. Discuss the relative convenience of pour- and streak-plate techniques in culturing clinical specimens

2. Why are plate cultures incubated in the inverted position?

3. How do you decide which colonies should be picked from a plate culture of a mixed flora?

4. Why is it necessary to make pure subcultures of organisms grown from clinical specimens:

5. How can you determine whether a culture or subculture is pure?

6. What kinds of clinical specimens may yield a mixed flora in bacterial cultures?

7. When more than one colony type appears in a pure culture, what are the most likely sources of the extraneous organisms?

Basic Techniques of Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Name

Class

Date

Exercise

Culturing Microorganisms
from the Environment

Microorganisms are found throughout the environment: in the air and water; on the surface of ob-
jects, clothes, tables, floors; in soil and dust; and on the skin and mucous membranes of our own
bodies.

These widely present microorganisms ordinarily are of no concern to healthy humans,
provided we maintain good hygiene in our daily living. In hospitals, however, where susceptible
patients must be protected from hospital-acquired (nosocomial) infections, the concentration and
distribution of microorganisms in the environment are of great importance. Frequent monitoring
of the environment is one of the responsibilities of the hospital epidemiologist, who may be a mi-
crobiologist, nurse, or physician.

Purpose

Materials

To take cultures from selected areas of the environment, in order to identify sources of
contaminating microorganisms

Nutrient broth
Nutrient agar plates
Sterile swabs

Procedures

1. Place a swab in a nutrient broth to moisten it. As you withdraw the swab, press it against the inner wall of the tube to
drain off excess fluid.

2. Take a culture of the floor with this swab by rubbing and rotating it over an area approximately 10 cm square.

3. Inoculate an agar plate with the swab by rotating it over a small area near one edge. Discard the swab and use your wire
loop to streak out the plate in a manner to obtain isolated colonies.

4. Moisten another swab in broth and take a culture of the sink faucet in the area around the aerator or strainer. Inoculate
and streak another agar plate as in step 3.

5. Take a fresh agar plate and touch separate areas of the agar surface with each fingertip of your right hand.

6. Take an agar plate into the lavatory. Place it on a shelf or the basin, remove the top, and leave the agar exposed for 30
minutes. Close, invert, and incubate the plate at 35°C.

7. Look around the laboratory for any area where dust has accumulated (window ledges, open shelves, hard-to-clean areas).
Take a culture of dust with a moist swab, inoculate, and streak an agar plate.

8. Take a culture (with a moist swab) of a 5-cm square area on the front of your laboratory coat. Inoculate and streak a plate

9. Run a moist swab through your hair. Inoculate and streak a plate.
10. Incubate all plates, inverted, at 35°C.

Culturing Microorganisms from the Environment

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

Results

Examine all plates and record your observations in the table.

Source of
Specimen

Approximate

Number of

Colonies

Number of

Different

Colony Types

Gram-Stain Reaction

2 Colony

Types

Microscopic

Morphology

2 Colony Types

Basic Techniques of Microbiology

Morello-Mizer-Granato:

I. Basic Techniques of

4. Cultivation of

Laboratory Manual and Microbiology Microorganisms Companies, 2003

Workbook in Microbiology,
7/e

Questions

1 . Did you find more gram-positive or gram-negative organisms

On the surface of your fingers?

In dust?

In the faucet?

On your clothes?

Can you account for any differences?

2. Did you find any endospore-forming bacteria in your cultures? If so, which cultures?

3. In what areas of a hospital must the numbers of microorganisms in the environment be strictly reduced to the minimum?

4. Why do microbiologists wear laboratory coats? Did you confirm that this is necessary:

5. Why is it necessary to wear clean, protective clothing when caring for a patient?

Culturing Microorganisms from the Environment

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

I. Basic Techniques of
Microbiology

4. Cultivation of
Microorganisms

6. Why should hair be kept clean and out of the way when caring for patients:

7. How can the numbers of microorganisms in the environment be controlled?

8. When and why is hand washing important in patient carer

9. How can those who care for patients avoid spreading microorganisms among them?

Basic Techniques of Microbiology

Morello-Mizer-Granato:

II. Destruction of

Laboratory Manual and Microorganisms Agents

Workbook in Microbiology,
7/e

5. Physical Antimicrobial

Section

Physical Antimicrobial
Agents

We can be certain that all forms of microbial life are completely destroyed only
when sterilizing techniques are used. The term sterilization is an absolute one; it
means total, irreversible destruction of living cells. A number of physical environ-
mental agents — such as ultraviolet or ionizing radiation, ultrasonic waves, or total
dryness — exert stress on microorganisms and may kill them, but they cannot de-
stroy large concentrations of microorganisms in a laboratory culture or a clinical
specimen. Even small numbers of microorganisms may not be totally destroyed
when exposed to ultraviolet rays or drying if they are distributed throughout and
protected by the fabrics contained in a clean surgical pack, for example.

Ultraviolet light does not penetrate most substances, including fabrics,
and therefore is used primarily to inactivate microorganisms located on surfaces.
In microbiology laboratories, ultraviolet lamps are used inside of biological safety
cabinets to decontaminate their surfaces, usually at the end of the day.

Of all the physical agents that exert antimicrobial effects, heat is the most
effective. It is an excellent sterilizing agent when applied at high enough temper-
atures for an adequate period of time, because it effectively stops cellular activi-
ties. Depending on whether it is moist or dry, heat can coagulate cellular proteins
(think of a boiled egg) or oxidize cell components (think of a burned finger or a
flaming piece of paper). Heat is also nonselective in its effects on microorganisms
(or other living cells), but we must bear in mind that this advantage is offset by its
capacity to destroy all materials, whether living or not.

In Exercises 12 and 13 we shall see some examples of sterilization by
use of moist and dry heat.

Morello-Mizer-Granato:

II. Destruction of

Laboratory Manual and Microorganisms Agents

Workbook in Microbiology,
7/e

5. Physical Antimicrobial

Name

Class Date

Exercise J Moist and Dry Heat

In order to sterilize a given set of materials, the appropriate conditions of heat and moisture must
be used. Moist heat coagulates microbial proteins (including protein enzymes), inactivating them
irreversibly. In the dry state, protein structures are more stable; therefore, the temperature of dry
heat must be raised much higher and maintained longer than that of moist heat. For example, in a
dry oven, 1 to 2 hours at 160 to 170°C is required for sterilization; however, with steam under
pressure (the autoclave, see Exercise 13), only 15 minutes at 121°C may be needed. The choice of
heat sterilization methods then depends on the heat sensitivity of materials to be sterilized.

EXPERIMENT 12.1 Moist Heat

It is possible to quantitate the response of microorganisms to heat by measuring the time required to kill them at different tem-
peratures. The lowest temperature required to sterilize a standardized pure culture of bacteria within a given time (usually 10 min
utes) can be called the thermal death point of that species, and, conversely, the time required to sterilize the culture at a stated tern
perature can be established as the thermal death time.

Purpose To demonstrate destruction of microorganisms by moist heat applied under controlled

conditions of time and temperature

Materials Tubed nutrient broths (5 -ml aliquots)

Nutrient agar plates
Sterile 1.0-ml pipettes

24-hour broth culture of Staphylococcus epidermidis
Six-day-old broth culture of Bacillus subtilis

Procedures

1 . Set up a beaker water bath and heat to boiling.

2. Divide one nutrient agar plate in half by marking the bottom of the plate with a wax pencil or ink marker.

3. Streak a loopful of the S. epidermidis culture onto one-half of the nutrient agar plate. Label the section of the plate with the
name of the organism and the word Control.

4. Repeat step 3 with the culture of B. subtilis, inoculating the second half of the plate.

5. Place the "control" plate in the 35°C incubator for 24 hours.

6. Divide two nutrient agar plates into 4 quadrants by marking the bottom of the plates with a wax pencil or ink marker.
Label one plate S. epidermidis and the other B. subtilis. Label the 4 quadrants on each plate as follows: 5, 10, 15, 30 minutes.

7. Take a pair of broth tubes and inoculate each, respectively, with 0.1 ml of S. epidermidis and B. subtilis. Place these tubes in
the boiling water bath. Note the time.

8. Leave the pair of broth cultures in boiling water for 5 minutes. Remove the tubes and cool them quickly under running
cold tap water. Streak a loopful of each boiled culture onto the quadrant of nutrient agar labeled 5 minutes.

9. Return the tubes to the boiling water bath for an additional 5 minutes. Begin timing when the water comes to a full boil.
Cool the tubes as in step 8 then streak a loopful of each culture onto the quadrant of nutrient agar labeled 10 minutes.

10. Repeat step 9 twice more, streaking loopfuls of culture onto the quadrants of the plates labeled 15 and 30 minutes,
respectively.

11. Incubate subcultures from boiled tubes at 35°C for 24 hours.

Destruction of Microorganisms

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

II. Destruction of
Microorganisms

5. Physical Antimicrobial
Agents

Results

1. Read all plates for growth ( + ) or no growth (— ). Record your results in the chart

Minutes Boiled

Culture

Control

S. epidermidis

B. subtilis

2. State your interpretation of these results for each organism
S. epidermidis:

B. subtilis:

EXPERIMENT 12.2 DRY HEAT

In this experiment, egg white (the protein, albumin) is used to simulate microbial enzyme protein. The speed of the damaging
reaction (coagulation) of moist and dry heat on protein will be observed.

Purpose

To compare the effects of moist and dry heat

Materials

Tubed distilled water (0.5 -ml aliquots)

Sterile 1.0-ml pipettes

Clean tubes

Dry-heat oven

Egg white (albumin, a protein)

Procedures

1. Set up a beaker water bath and heat to boiling.

2. Set the dry-heat oven for 100°C.

3. Using a pipette, measure 0.5 ml of egg white into 0.5 ml of distilled water.

4. Place the tube into the boiling water bath and immediately begin timing. Observe until the egg white has coagulated, then
record the elapsed time.

5. Using a pipette, measure 1.0 ml of egg white into a clean tube.

6. Place the tube into the dry-heat oven and immediately begin timing. Observe until the egg white has coagulated, then
record the elapsed time.

Moist and Dry Heat

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

II. Destruction of
Microorganisms

5. Physical Antimicrobial
Agents

Results

1. Elapsed time for protein coagulation in moist heat (boiling):
Elapsed time for protein coagulation in dry heat (baking):

2. State your interpretation of the effect of moisture on protein denaturation:

EXPERIMENT 12.3 Incineration

Purpose

To learn the effect of flaming with dry heat

Materials

Nutrient agar plates

24-hour broth culture of Staphylococcus epidermidis

Six-day-old culture of Bacillus subtilis

Procedures

1. With your marking pencil, section an agar plate into two parts.

2. Streak the S. epidermidis culture on one-half of the plate. Label this section Control.

3. Sterilize the loop, take another loopful of S. epidermidis culture and sterilize the loop again in the Bunsen burner flame or
bacterial incinerator. When the loop is cool, use it to streak the second half of the plate. Label this section Heated.

4. Repeat procedures 1 to 3 with the B. subtilis culture.

5. Incubate the plates at 35°C for 24 hours.

Results

Read for growth ( + ) or no growth (— ) and record.

Organism

Control

Incineration

S. epidermidis

B. subtilis

Destruction of Microorganisms

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

II. Destruction of
Microorganisms

5. Physical Antimicrobial
Agents

Questions

1. How are microorganisms destroyed by moist heat? By dry heat?

2. Are some microorganisms more resistant to heat than others? Why:

3. Is moist heat more effective than dry heat? Why?

4. Why does dry heat require higher temperatures for longer time periods to sterilize than does moist heat?

Moist and Dry Heat

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

II. Destruction of
Microorganisms

5. Physical Antimicrobial
Agents

5. What is the relationship of time to temperature in heat sterilization? Explain

6. Would you recommend boiling or baking to sterilize a soiled surgical instrument? Why?

7. What kinds of clean hospital materials would you sterilize by baking? Why:

8. Name some hospital materials that could be sterilized by flaming without harming them

Destruction of Microorganisms

Morello-Mizer-Granato:

II. Destruction of

Laboratory Manual and Microorganisms Agents

Workbook in Microbiology,
7/e

5. Physical Antimicrobial

Name

Class Date

Exercise s The Autoclave

The autoclave is a steam-pressure sterilizer. Steam is the vapor given off by water when it boils at
100°C. If steam is trapped and compressed, its temperature rises as the pressure on it increases. As
pressure is exerted on a vapor or gas to keep it enclosed within a certain area, the energy of the
gaseous molecules is concentrated and exerts equal pressure against the opposing force. The energy
of pressurized gas generates heat as well as force. Thus, the temperature of steam produced at 100°C
rises sharply above this level if the steam is trapped within a chamber that permits it to accumulate
but not to escape. A kitchen pressure cooker illustrates this principle because it is, indeed, an "au-
toclave." When a pressure cooker containing a little water is placed over a hot burner, the water
soon comes to a boil. If the lid of the cooker is then clamped down tightly while heating contin-
ues, steam continues to be generated but, having nowhere to go, creates pressure as its temperature
climbs steeply. This device may be used in the kitchen to speed cooking of food, because pressur-
ized steam and its high temperature (120 to 125°C) penetrates raw meats and vegetables much
more quickly than does boiling water or its dissipating steam. In the process, any microorganisms
that may also be present are similarly penetrated by the hot pressurized steam and destroyed.

Essentially, an autoclave is a large, heavy-walled chamber with a steam inlet and an air
outlet (fig. 13.1). It can be sealed to force steam accumulation. Steam (being lighter but hotter than
air) is admitted through an inlet pipe in the upper part of the rear wall. As it rushes in, it pushes
the cool air in the chamber forward and down through an air discharge line in the floor of the
chamber at its front. When all the cool air has been pushed down the line, it is followed by hot
steam, the temperature of which triggers a thermostatic valve placed in the discharge pipe. The
valve closes off the line and then, as steam continues to enter the sealed chamber, pressure and tem-
perature begin to build up quickly. The barometric pressure of normal atmosphere is about 15 lb
to the square inch. Within an autoclave, steam pressure can build to 15 to 30 lb per square inch
above atmospheric pressure, bringing the temperature up with it to 121 to 123°C. Steam is wet and
penetrative to begin with, even at 100°C (the boiling point of water) . When raised to a high tem-
perature and driven by pressure, it penetrates thick substances that would be only superficially
bathed by steam at atmospheric pressure. Under autoclave conditions, pressurized steam kills bac-
terial endospores, vegetative bacilli, and other microbial forms quickly and effectively at tempera-
tures much lower and less destructive to materials than are required in a dry-heat oven (160 to
170°C).

Temperature and time are the two essential factors in heat sterilization. In the autoclave
(steam-pressure sterilizer), it is the intensity of steam temperature that sterilizes (pressure only pro-
vides the means of creating this intensity), when it is given time measured according to the nature
of the load in the chamber. In the dry-heat oven, the temperature of the hot air (which is not very
penetrative) also sterilizes, but only after enough time has been allowed to heat the oven load and
oxidize vital components of microorganisms without damaging materials. Table 13.1 illustrates the
influence of pressure on the temperature of steam and, in turn, the influence of temperature on
the time required to kill heat-resistant bacterial endospores. Compare these figures with those re-
quired for an average oven load — 160°C for two hours, 170°C for one hour — and you will see the
efficiency of steam-pressure sterilization. Timing should not begin in either oven or autoclave ster-
ilization until the interior chamber has reached sterilizing temperature.

The Autoclave

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

II. Destruction of
Microorganisms

5. Physical Antimicrobial
Agents

Philadelphia, Pennsylvania. Reprinted by permission.

Chamber

Chamber discharge

and vacuum valve

Chamber
steam

supply
valve t

pressure
gauge

Safety
valve

)

Baffle

Tray

J acket

:v_

Jacket

Steam traps

-^Thermostatic

Chamber bellows

Vapor
trap

Drain

Pressure
regulator

Steam
supply
valve

Thermometer

Chamber

discharge
valve

Table 13.1 Pressure-Temperature-Time Relationships in Steam-Pressure Sterilization

Steam Pressure,

Pounds per Square Inch

(Above Atmospheric Pressure)

Temperature

77me (Minutes Required

to Kill Exposed

Heat-Resistant Endospores)

Centigrade

Fahrenheit

10
15
20
30

100°

115.5°

121.5°

126.5°

134°

212°
240°
250°
260°
270°

15-60

12-15

5-12

3-5

Destruction of Microorganisms

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

II. Destruction of
Microorganisms

5. Physical Antimicrobial
Agents

The nature of the load in a heating sterilizing chamber greatly influences the time required
to sterilize every item within the load. Steam penetration of thick, bulky, porous articles, such as op-
erating room linen packs, takes much longer than does steam condensation on the surfaces of metal
surgical instruments or laboratory glassware (quickly raised to sterilizing temperatures). The pack-
aging of individual items (wrapped, plugged, or in a basket) also influences heat penetration, as
does the arrangement of the total load in either an autoclave or an oven. In the autoclave, steam
must be able to penetrate every surface of every item. In the oven, hot air must circulate freely
around each piece in the load to bring it to sterilizing temperature. When sterilizing empty con-
tainers in a steam-pressure sterilizer, for example, it is important to consider that they contain cool
air. Air is cooler and heavier than steam and cannot be permeated by it; therefore, microorganisms
lingering within air pockets existing in or among items placed in an autoclave may survive steam
exposure. For this reason, empty containers such as test tubes, syringes, beakers, and flasks, should
be laid on their sides so that the air they contain can run out and downward and be replaced by
steam. Similarly, packaged materials should be positioned so that air pockets are not created among
or between them.

Under routine conditions, properly controlled, steam-pressure sterilization can be ac-
complished under specific conditions of pressure, time, and temperature.

15 to 20 lb of steam pressure

121 to 125°C (250 to 256°F) steam temperature

15 to 45 minutes, depending on the nature of the load

Bacteriologic controls of proper autoclave function are essential to ensure that sterilization
is being achieved with each run of the steam-pressure sterilizer. Preparations of heat-resistant bac-
terial endospores are commercially available for this purpose. Such preparations contain viable en-
dospores dried on paper strips or suspended in nutrient broth within a sealed ampule (fig. 13.2).
When appropriately placed within an autoclave load, endospore controls can reveal whether the
autoclave is operating efficiently and mechanically; individual item packaging is correct; and load
arrangement permits sterilization of every item within the load.

The endospores of a bacterial species called Bacillus stearothermophilus provide a highly
critical test of autoclave procedures because they are extremely resistant to the effects of moist or
dry heat. As their name implies, they are heat (thermo-) -loving (-philus), but this also means that
they require a higher incubation temperature than is optimal for most bacteria. The vegetative cells

Figure 13.2

Strips containing B. stearothermophilus endospores are placed in the autoclave with the material to be
sterilized. After the autoclave cycle is completed, each strip is placed into a broth medium and incubated at
56°C. A second, control strip that has not been autoclaved is incubated in broth at the same time. The
endospores on the control strip (left) have germinated and the growing vegetative cells have changed the color
of the pH indicator in the broth; the autoclaved endospores (right) have been successfully sterilized and,
therefore, the broth remains the original color.

The Autoclave

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

II. Destruction of
Microorganisms

5. Physical Antimicrobial
Agents

of B. stearothermophilus grow best at 56°C rather than at the 35 °C temperature that is optimal for
most pathogenic microorganisms. When dried on paper strips, these endospores provide a good
test of oven sterilization techniques. When suspended in broth in sealed ampules, they are very use-
ful for testing autoclave performance.

B. stearothermophilus endospores on paper strips are packaged within paper envelopes that
are placed within a load before heat sterilization. After sterilization, they are removed from their
envelopes (aseptically), placed in appropriate nutrient broth, incubated at 56°C, and observed for
evidence that they did or did not survive the sterilizing technique. Sealed ampules containing en-
dospore suspensions are placed in an autoclave load (they cannot be used to test oven sterilization
because they contain liquid), removed, and simply placed, without being opened, in an appropri-
ate incubator (water bath or incubator at 56°C). Within a sealed ampule, endospores have been sus-
pended in a nutrient broth also containing a pH-sensitive dye indicator. If endospores survive au-
toclaving and germinate again under incubation, vegetative bacilli begin to multiply in the broth.
In the process, they use its nutrients, producing acid end products that cause the indicator to change
color. They also produce turbidity in the medium.

When strips or ampules are used to test heat-sterilization technique, unheated strip or
ampule controls must be incubated also to prove that the endospores were viable to begin with. At
the completion of the incubation time, evidence of growth should be observed for the control but
not the heated endospore preparations. If the heated test strips or ampules do not show growth by
24 to 48 hours, incubation should be continued for up to 7 days. The test then may be reported as
negative, and the sterilization technique is assumed to have been effective. Patient-care materials
included in the sterilized load are then safe to use. If, however, the endospores in the control prepa-
ration have not germinated, the test is considered unreliable, and the sterilized material cannot be
assumed to be free of contaminating microorganisms. The sterilization procedure should be re-
peated with a new lot of strips or ampules.

Ampules containing liquid endospore suspensions must be kept refrigerated before use,
because warm storage temperatures may permit endospore germination that could be wrongly in-
terpreted. Dried endospore strips may be stored at room temperature because dry endospores are
not likely to germinate.

In this exercise, you will have an opportunity to see the sterilizing effects of an autoclave.

Purpose

To illustrate the use and control of an autoclave

Materials Commercially prepared strips or ampules containing Bacillus stearothermophilus endospores*

Nutrient broth (if strips are used)
Forceps (if strips are used)
1.0-ml sterile pipettes
56°C water bath or incubator
Phenol red glucose broth tubes
Six-day-old broth culture of Bacillus subtilis

*Some commercially available paper strips (Steris Corp., "Spordex Biological Indicators") contain two types of endospores in combination: those of
B. stearothermophilus and also B. subtilis. The latter are less heat resistant than endospores of B. stearothermophilus and do not require a high incubation
temperature to germinate (35 to 37°C is satisfactory for incubation of B. subtilis). These combination strips can therefore be used in either a gas sterilizer,
an autoclave, or an oven. In a gas sterilizer, the relatively low temperature will destroy B. subtilis endospores but not those of B. stearothermophilus. Strips
used for this purpose may then be incubated at 35°C to test for the survival of B. subtilis (the thermophile will not grow), while strips placed in an autoclave
or oven load are incubated at 56°C to test for growth of B. stearothermophilus (the mesophile will not grow).

Destruction of Microorganisms

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

II. Destruction of
Microorganisms

5. Physical Antimicrobial
Agents

Procedures

1. The instructor will discuss and demonstrate the operation of the autoclave.

2. Inoculate a tube of phenol red glucose broth with 0.1 ml of the B. subtilis culture (finger the pipette). Label it Unheated and
place it in the incubator at 35°C for 24 hours.

3. Submit the culture of B. subtilis for autoclaving at 15 lb, 121°C, for 15 minutes. Afterward, inoculate a tube of phenol red
glucose broth with 0.1 ml of the autoclaved culture. Label it Autoclaved. Incubate the glucose broth at 35°C for 24 hours.

4. The instructor will demonstrate the use of endospore controls. An unheated B. stearothermophilus endospore preparation
will be placed in a 56°C water bath or incubator. Another will be placed in the autoclave with your subculture of B. subtilis
and then incubated.

a. If strips are used, the paper envelope of one will be torn open, and the strip will be removed with heat-sterilized
forceps and placed in nutrient broth incubated at 56°C. Another will be placed in the autoclave (in its envelope) and
heated and then removed and placed in broth.

b. If ampules are used, one will be placed (unheated, unopened) in the 56°C water bath or incubator. Another will be
autoclaved and then incubated according to the manufacturer's directions.

5. After at least 24 hours of incubation of all cultures, read and examine them for evidence of growth (+) or no growth (— ).

Results

1. Record culture results in the table

Autoclave

Appearance of

Incubated Controls

or Glucose Broth Cultures

Test Organism

Time

Temp.

Pressure

Incubation
Temperature

Color

Turbidity

Growth
(+ or -)

B. stearothermophilus
Unheated control

Autoclaved control

B. subtilis

Unheated culture

Autoclaved culture

2. State your interpretation of these results.

3. State the method used for timing the autoclave in your experiment.

The Autoclave

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

II. Destruction of
Microorganisms

5. Physical Antimicrobial
Agents

Questions

1. Define the principles of sterilization with an autoclave and with a dry-heat oven

2. What pressure, temperature, and time are used in routine autoclaving?

3. What factors determine the time period necessary for steam-pressure sterilization? Dry-heat oven sterilization?

4. Why is it necessary to use bacteriologic controls to monitor heat-sterilization techniques?

5 . When running an endospore control of autoclaving technique, why is one endospore preparation incubated without
heating?

6. Would a culture of E. coli make a good bacteriologic control of heat-sterilization techniques? Why :

7. What characteristics of JB. stearothermophilus make it valuable for use as a control organism for heat-sterilization techniques?
Explain.

Destruction of Microorganisms

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

II. Destruction of
Microorganisms

5. Physical Antimicrobial
Agents

8. What factors determine the choice of a paper strip containing bacterial endospores or a sealed ampule containing an
endospore suspension for testing heat-sterilization equipment?

9. Would you choose a dry-heat oven, an autoclave, or incineration to heat sterilize the following items? State why

Soiled dressings from a surgical wound:

Surgical instruments:

Clean laboratory glassware:

Clean reusable syringes:

10. Why should the results of endospore control tests be known before heat-sterilized materials are used for patient carer

The Autoclave

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and Microorganisms Agents

Workbook in Microbiology,

7/e

Companies, 2003

Section

Chemical Antimicrobial
Agents

A wide variety of chemical agents display antimicrobial activity to some degree. In
considering their application to patient care, we may separate them into two general
classes: (1 ) those that are useful for destroying pathogenic microorganisms in the en-
vironment {disinfectants) or on skin (antiseptics), and (2) those that may be adminis-
tered to patients for treatment of infectious diseases [antimicrobial agents).

Many antimicrobial substances are too toxic to be used for patient therapy
but are valuable as environmental disinfectants. These must be chosen carefully for
the job to be done, because a given disinfectant usually does not kill all microbial
pathogens. Each agent has a limited chemical mode of action, and microorganisms
exposed to it may vary widely in their responses. Some microbes or their forms may
succumb to its effects (such as vegetative bacterial cells) whereas others may not
(such as bacterial endospores). In the experiments of Exercise 14, we shall study
some of the many factors that influence the disinfection process.

Antimicrobial agents are substances that are naturally produced by a vari-
ety of microorganisms (primarily fungi and bacteria), or have been synthesized in the
laboratory, or a combination of both. For example, scientists in pharmaceutical com-
panies have made many chemical modifications of the penicillin molecule (a product
of the fungus Penicillium notatum) to broaden its spectrum of activity. In strict use,
antibiotic refers only to those antimicrobial substances produced by microorganisms,
but the term is often used interchangeably with antimicrobial agent. Antimicrobial
agents have inhibitory or lethal effects on many pathogenic organisms (especially
bacteria) that cause infectious diseases. In purified form, they are administered to pa-
tients for their antimicrobial effects within the body. In general, each agent has spe-
cial activity against one or more types of microorganisms (gram-positive bacteria,
gram-negative bacteria, fungi, and some viruses).

Like disinfectants, antimicrobial agents have specific chemical modes of
action, but the range of activity of antimicrobial agents is narrower. Therefore, as we
shall learn in Exercise 15, the diagnostic microbiology laboratory tests the antimicro-
bial susceptibility of pathogenic bacteria so as to provide the physician with valuable
information about the most clinically useful antimicrobial agent with which to treat a
patient's infection specifically. At present, reliable tests for determining fungal and vi-
ral susceptibility to antimicrobial agents are not generally available. In addition to the
isolation and identification of pathogenic microorganisms that we shall study in sec-
tions of Part 3, antimicrobial susceptibility testing is one of the most important func-
tions of the diagnostic microbiology laboratory.

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

Name

Class

Date

Exercise

Disinfectants

Disinfection is defined as the destruction of pathogenic microorganisms (not necessarily all microbial
forms). It is a process involving chemical interactions between a toxic antimicrobial substance and
enzymes or other constituents of microbial cells. A disinfectant must kill pathogens while it is in
contact with them, so that they cannot grow again when it is removed. In this case it is said to be
cidal (lethal), and it is described, according to the type of organism it kills, as bactericidal, viruci-
dal, sporicidal, or simply germicidal. If the antimicrobial substance merely inhibits the organisms
while it is in contact with them, they may be able to multiply again when it is removed. In this
case, the agent is said to have static activity (it arrests growth) and may be described as bacteriosta-
tic, fungistatic, or virustatic, as the case may be. According to its definition, a chemical disinfectant
should produce irreversible changes that are lethal to cells.

Microorganisms of different groups are not uniformly susceptible to chemical disinfec-
tion. Tubercle bacilli are more resistant than most other vegetative bacteria because of their waxy
cell walls, but of all microbial forms, bacterial endospores display the greatest resistance to both
chemical and physical disinfecting agents. Fungal conidia (spores) are also somewhat resistant, al-
though yeasts and hyphae (nonsporing fungal structures), like bacteria, succumb quickly to active
disinfectants. Many bactericidal disinfectants also kill viruses, but the viral agents of hepatitis are
very resistant.

Since microorganisms differ in their response to chemical antimicrobial agents, the choice
of disinfectant for a particular purpose is guided in part by the type of microbe present in the con-
taminated material. Disinfectants that effectively kill vegetative bacteria may not destroy bacterial
endospores, fungal conidia, tubercle bacilli, or some viruses. Other practical factors to consider
when choosing a disinfectant include the exposure time and concentration required to kill mi-
croorganisms, the temperature and pH for its optimal activity, the concentration of microorganisms
present, and the toxicity of the agent for skin or its effect on materials to be disinfected.

Purpose

Materials

To study the activity of some disinfectants and to learn the importance of time, germicidal
concentration, and microbial species in disinfection

Nutrient agar plates

Sterile, empty tubes

Sterile 10-ml pipettes (cotton plugged)

Sterile 1.0-ml pipettes (cotton plugged)

Bulb or other aspiration device for pipette

5% sodium hypochlorite (bleach); 0.05% sodium hypochlorite

Absolute alcohol, 70% alcohol

3% hydrogen peroxide

1% Lysol, 5% Lysol

Iodophor (Betadine)

Antiseptic mouthwash

24-hour nutrient broth culture of Escherichia coli

Three- to six-day-old broth culture of Bacillus subtilis

Destruction of Microorganisms

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

Table 14.1 summarizes the properties of some common disinfectants. Note that the use-
dilution (concentration over which the chemical agent is effective) varies among agents and even
for the same agent. The disinfectants are categorized as having a low, intermediate, or high level of
activity according to the range of microorganisms that they inactivate. Only high-level agents have
an effect on resistant bacterial endospores, but all are effective against bacterial vegetative cells and
some types of viruses.

Table 14.1 Some Common Disinfectants with Their Use-Dilutions and Properties

Inactivates*

Important Characteristics

ect

atter

IfS

CO
CD

inic

/iruses

ed Virui

DSJS

\dospor

1 week

eleterio

by Orga

Irritant

nable

Level

ria

oped \

ivetop

Dercuk

rial En

Life >

vated i

rritant

ritant

ratory

Obtai

veU

'5)

elf

sid

"43

spi

■

-c

Germicide

Use-Dilution

Disinfection

Isopropyl

alcohol

60-95%

Int

—

Hydrogen

peroxide

3-25%

CS/High

—

Formaldehyde

3-8%

High/lnt

—

Quaternary

ammonium

compounds

0.4-1 .6%

aqueous

Low

—

H-

—

Phenolic

0.4-5%

aqueous

Int/Low

H-

—

Chlorine

1 00-1 000
ppm free

chlorine

High/Low

lodophors

30-50
ppm free

iodine

Int

—

G I Paraldehyde

CS/High

—

nactivates all indicated microorganisms with a contact time of 30 min or less, except bacterial endospores, which require 6-10 hours contact time.
Abbreviations: Int, intermediate; CS, chemical sterilant; +, yes; -, no; ±, variable results.

Source: Modified from Rutala W. A. 1996. Selection and Use of Disinfectants in Health Care, pp. 913-936. In C. Glen Mayhall, ed. Hospital Epidemiology and
Infection Control. Williams & Wilkins, Baltimore.
Modified from Laboratory Biosafety Manual, Geneva: World Health Organization, 1983.

Procedures

1. Select one of the chemical agents provided. Pipette 5.0 ml of the solution into a sterile test tube.

2. To the 5 ml of disinfectant, add 0.5 ml of the E. coli culture. Gently shake the tube to distribute the organisms uniformly.
Note the time.

3. Divide a nutrient agar plate into four sections with a marking pen or pencil. At intervals of 2, 5, 10, and 15 minutes,
transfer one loopful of the disinfectant-culture mixture to a section of the nutrient agar plate. Label each plate with the

Disinfectants

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

name of the organism, the disinfectant, and its concentration (e.g., E. coli, 1% phenol). Label each section of the plate with
the time of exposure (e.g., 2 minutes, 5 minutes, etc.).

4. Using the same concentration of the same disinfectant, repeat steps 1 to 3 with the culture of B. subtilis.

5. Inoculate one-half of a nutrient agar plate directly from the E. coli culture and the other half from the B. subtilis culture.
Label each half with the name of the organism and the word Control.

6. Incubate all tubes at 35°C for 48 hours.

Results

1. Observe all plate sections for growth ( + ) or absence of growth (— ). Complete the table by recording your own and your
neighbors' results with each disinfectant.

Concentration

Organism

Time of Exposure (Min)

Disinfectant

Control

E. coli

Sodium Hypochlorite

B. subtilis

0.05%

E. coli

B. subtilis

Absolute

E. coli

Alcohol

B. subtilis

70%

E. coli

B. subtilis

Hydrogen Peroxide

E. coli

B. subtilis

E. coli

Lysol

B. subtilis

E. coli

B. subtilis

lodophor

10%

E. coli

B. subtilis

Mouthwash

E. coli

B. subtilis

Check label of mouthwash bottle; fill in concentration of active ingredient,

2. State your interpretation of these results:

Destruction of Microorganisms

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

Questions

1 . During their laboratory testing, if disinfectants are carried over into microbial cultures, could the results be affected?
Explain.

2. Define disinfection.

3. What does bactericidal mean? Bacteriostatic? Virucidal? Fungistatic?

4. Why are control cultures necessary in evaluating disinfectants?

5. What factors can influence the activity of a disinfectant?

6. Why do microorganisms differ in their response to disinfectants?

7. What microorganisms are most susceptible to disinfectants?

Disinfectants

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

8. Which microbial forms are most resistant to disinfectants?

9. How can bacteriostatic and bactericidal disinfectants be distinguished?

10. What is an iodophor? What is its valuer

1 1 . Did you find the mouthwash you tested to be as effective as the other disinfectants included in this exercise? Explain any
difference you observed.

12. Why are bacterial endospores a problem in the hospital environment?

13. Briefly discuss disinfection in relation to patient care.

Destruction of Microorganisms

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and Microorganisms Agents

Workbook in Microbiology,

7/e

Companies, 2003

Name

Class Date

Exercise | ^ Antimicrobial Agent Susceptibility

Testing and Resistance

An important function of the diagnostic microbiology laboratory is to help the physician select ef-
fective antimicrobial agents for specific therapy of infectious diseases. When a clinically significant
microorganism is isolated from the patient, it is usually necessary to determine how it responds in
vitro to medically useful antimicrobial agents, so that the appropriate drug can be given to the pa-
tient. Antimicrobial susceptibility testing of the isolated pathogen indicates which drugs are most
likely to inhibit or destroy it in vivo.

Susceptibility testing has shown that bacteria are becoming increasingly resistant to a
wide variety of antimicrobial agents. Although new antibiotics continue to be developed by phar-
maceutical manufacturers, the microbes seem to quickly find ways to avoid their effects. Two im-
portant bacteria that have developed resistance to multiple antimicrobial agents are Staphylococcus
aureus strains, especially those resistant to the drug methicillin and its relatives, and Enterococcus spp.
resistant to vancomycin. These organisms are referred to as methicillin-resistant S. aureus (MRSA)
and vancomycin-resistant enterococci (VRE), respectively. Methods for identifying staphylococci
and enterococci are described in detail in Exercises 20 and 21, but antibiotic-resistant strains of both
organisms play important roles in infections acquired by hospitalized patients. The laboratory must
use methods to detect this resistance so that special precautions are quickly instituted to prevent
transfer of the resistant bacteria among patients.

EXPERIMENT 15.1 Agar Disk Diffusion Method

The testing method most frequently used is the standardized filter paper disk agar diffusion method, also known as the NCCLS
(National Committee for Clinical laboratory Standards) or Kirby-Bauer method. In this test, a number of small, sterile filter pa-
per disks of uniform size (6 mm) that have each been impregnated with a defined concentration of an antimicrobial agent are
placed on the surface of an agar plate previously inoculated with a standard amount of the organism to be tested. The plate is in-
oculated with uniform, close streaks to assure that the microbial growth will be confluent and evenly distributed across the en-
tire plate surface. The agar medium must be appropriately enriched to support growth of the organism tested. Using a disk dis-
penser or sterile forceps, the disks are placed in even array on the plate, at well-spaced intervals from each other. When the disks
are in firm contact with the agar, the antimicrobial agents diffuse into the surrounding medium and come in contact with the
multiplying organisms. The plates are incubated at 35°C for 18 to 24 hours.

After incubation, the plates are examined for the presence of zones of inhibition of bacterial growth (clear rings) around
the antimicrobial disks (see colorplate 14). If there is no inhibition, growth extends up to the rim of the disks on all sides and the
organism is reported as resistant (R) to the antimicrobial agent in that disk. If a zone of inhibition surrounds the disk, the organ-
ism is not automatically considered susceptible (S) to the drug being tested. The diameter of the zone must first be measured (in
millimeters) and compared for size with values listed in a standard chart (Table 15.1). The size of the zone of inhibition depends
on a number of factors, including the rate of diffusion of a given drug in the medium, the degree of susceptibility of the organ-
ism to the drug, the number of organisms inoculated on the plate, and their rate of growth. It is essential, therefore, that the test
be performed in a fully standardized manner so that the values read from the chart provide an accurate interpretation of suscep-
tibility or resistance. In some instances, the organism cannot be classified as either susceptible or resistant, but is interpreted as be-
ing of "intermediate" or "indeterminate" (I) susceptibility to a given drug. The clinical interpretation of this category is that the
organisms tested may be inhibited by the antimicrobial agent provided that either (1) higher doses of drug are given to the pa-
tient, or (2) the infection is at a body site where the drug is concentrated; for example, the penicillins are excreted from the body
by the kidneys and reach higher concentrations in the urinary tract than in the bloodstream or tissues. When an interpretation of
I is obtained, the physician may wish to select an alternative antimicrobial agent to which the infecting microorganism is fully
susceptible or additional tests may be necessary to assess the susceptibility of the organism more precisely.

Antimicrobial Agent Susceptibility Testing and Resistance

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

Table 15.1 Zone Diameter Interpretive Table

Antimicrobial Agent

Disk Concentration

Diameter of Inhibition Zone (mm)

Ampicillin 3

10 fxg

<13

14-16

>17

Carbenicillin 5

100|xg

<13

14-16

>17

Cefoxitin

30 fig

<14

15-17

>18

Cephalothin

30 |xg

<14

15-17

>18

Clindamycin

2 |xg

<14

15-20

>21

Ciprofloxacin

5 jxg

<15

16-20

>21

Erythromycin

15 |xg

<13

14-22

>23

Gentamicin

10 \JuQ

<12

13-14

>15

Methicillin c

5 fxg

10-13

>14

Penicillin G c

10 units

<28

>29

Penicillin G d

10 units

<14

>15

Sulfonamides

250 or 300 fig

<12

13-16

>17

Tetracycline

30 fxg

<14

15-18

>19

Vancomycin

30 |xg

>15

Vancomycin 01

30 |xg

<14

15-16

>17

Source: Adapted from Performance Standards for Antimicrobial Disk Susceptibility Tests — 11 th Informational Supplement (M100-S1 1). National Committee for

Clinical Laboratory Standards, NCCLS, 2001. The material is constantly being updated, and you should obtain the latest information from NCCLS.

Note: Zone sizes appropriate only when testing

a G ram-negative enteric organisms

b Pseudomonas

Staphylococci

d Enterococci

Staphylococcal isolates with zones of 14 mm or less require confirmatory testing by the broth dilution method (see Experiment 15.2). They may represent

emergence of a seriously resistant pathogen.

Purpose

To learn the agar disk diffusion technique for antimicrobial susceptibility testing

Materials

Nutrient agar plates (Mueller-Hinton if available)

Tubes of sterile nutrient broth or saline (5 ml each)

Antimicrobial disks (various drugs in standard concentrations)

Antimicrobial disk dispenser (optional)

McFarland No. 0.5 turbidity standard

Sterile swabs

Forceps

24-hour plate cultures of Staphylococcus epidermidis and Escherichia coli

Procedures

1 . Touch 4 to 5 colonies of S. epidermidis with your sterilized and cooled inoculating loop. Emulsify the colonies in 5 ml of
sterile broth or saline until the turbidity is approximately equivalent to that of the McFarland No. 0.5 turbidity standard.

2. Dip a swab into the bacterial suspension, express any excess fluid against the side of the tube, and inoculate the surface of
an agar plate as follows: first streak the whole surface of the plate closely with the swab; then rotate the plate through a 45'
angle and streak the whole surface again; finally rotate the plate another 90° and streak once more. Discard the swab in
disinfectant.

Destruction of Microorganisms

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

3. Repeat steps 1 and 2 with the E. coli broth culture on a second nutrient agar plate.

4. Heat the forceps in the Bunsen burner flame or bacterial incinerator, and allow to cool.

5. Pick up an antimicrobial disk with the forceps and place it on the agar surface of one of the inoculated plates. Press the
disk gently into full contact with the agar, using the tips of the forceps.

6. Heat the forceps again and cool.

7. Repeat steps 5 and 6 until about eight different disks are in place on one plate, spaced evenly away from each other. (If an
antimicrobial disk dispenser is available, all disks may be dispensed on the agar surface simultaneously. Be certain to press
them into contact with the agar using the forceps tips.)

8. Place a duplicate of each disk on the other inoculated plate, using the same procedures.

9. Invert the plates and incubate them at 35°C for 18 to 24 hours.

Results

Observe for the presence or absence of growth around each antimicrobial disk on each plate culture. Using a ruler with millimeter
markings, measure the diameters of any zones of inhibition and record them in the chart. If the organism grows right up to the
edge of a disk, record a zone diameter of 6 mm (the diameter of the disk).

Concentration

Zone Diameter

E. coli
(S, 1, or R)

Antimicrobial
Agent

E. coli

S.
epidermidis

S. epidermidis
(S, 1, or R)

EXPERIMENT 15.2

Broth Dilution Method: Determining Minimum Inhibitory
Concentration (MIC)

In certain instances of life-threatening infections such as bacterial endocarditis, or infections caused by highly or multiple resist-
ant organisms, the physician may require a quantitative assessment of microorganism susceptibility rather than the qualitative re-
port of S, I, or R. The laboratory then tests the susceptibility of the organism to varying concentrations of one or more appro-
priate antimicrobial agents. Twofold dilutions of each antimicrobial agent are prepared over a range of concentrations that are
achievable in the patient's bloodstream or urine (depending on the infection site) when standard doses of the drug are adminis-
tered. In some cases, rather than preparing a full series of twofold dilutions, the organism is tested in only two or three anti-
microbial concentrations. In this breakpoint dilution method, the concentrations tested are chosen carefully to discriminate between
susceptible and resistant organisms.

The antimicrobial dilutions may be prepared in a broth medium, or each concentration of antimicrobial agent to be
tested can be incorporated into an agar medium. In this agar dilution method many organisms (up to 32) can be tested on a single
agar plate although several plates, each containing a different antimicrobial concentration, are needed to perform the assay. When
only a single organism is tested, the broth dilution method is more rapid and economical to perform. Many laboratories now use

Antimicrobial Agent Susceptibility Testing and Resistance

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

commercially available microdilution plates. These consist of multiwelled plastic plates prefilled with various dilutions of several
antimicrobial agents in broth (see colorplate 15). Using a multipronged device, the microwells are inoculated simultaneously with
a standardized suspension of the test organism. Thus the susceptibility of an organism to many antimicrobial agents may be read-
ily tested.

Regardless of the dilution method chosen, the results are interpreted in the same manner. After 18 to 24 hours of in-
cubation at 35°C, the broths or plates are examined for inhibition of bacterial growth. For each antimicrobial agent, the lowest
concentration that inhibits growth is referred to as the minimum inhibitory concentration, or MIC. As with the disk agar diffu-
sion method, in order to obtain accurate information, variables such as inoculum size, phase of organism growth, broth or agar
medium used, and antimicrobial agent storage conditions must be rigidly controlled.

Purpose

To learn the broth dilution method for antimicrobial susceptibility testing

Materials

Nutrient broth (Mueller-Hinton if available)

Sterile tubes

Broth containing 128 |JLg of ampicillin per ml

Sterile 1- and 5 -ml pipettes

Bulb or other aspiration device for pipette

Tubes of sterile saline (5.0 and 9.9 ml per tube)

Overnight plate culture of Escherichia coli

Procedures

1. Place nine sterile tubes in a rack and label them:

Tube No.:

Label:

Growth
Control

Sterility
Control

2. With a 5-ml pipette add 0.5 ml of sterile broth to each tube.

3. Add 0.5 ml of the ampicillin broth to the first tube (fig. 15.1a). Discard the pipette. The concentration of ampicillin in this
tube is 64 jxg per ml.

4. Take a fresh pipette, introduce it into the first tube (64 fig per ml), mix the contents thoroughly, and transfer 0.5 ml from
this tube into the second tube (32 |xg per ml). Discard the pipette.

5. With a fresh pipette, mix the contents of the second tube and transfer 0.5 ml to the third tube (16 |JLg per ml).

6. Continue the dilution process through tube number 7. The eighth and ninth tubes receive no antibiotic.

7. After the contents of the seventh tube are mixed, discard 0.5 ml of broth so that the final volume in all tubes is 0.5 ml.

8. From the plate culture of E. coli prepare a suspension of the organism in 5 ml of saline equivalent to a McFarland 0.5
standard (see Experiment 15.1).

9. With a sterile 1-ml pipette, transfer 0.1 ml of the E. coli suspension into a tube containing 9.9 ml of saline. Discard the
pipette.

10. With a fresh pipette, mix the contents of the tube well. Add 0.1 ml of this organism suspension to the antibiotic-
containing broth tubes 1 through 7 and to the growth control tube (fig. 15.1b).

11. Shake the rack gently to mix the tube contents and place the tubes in the incubator for 18 to 24 hours.

Destruction of Microorganisms

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

Figure 15.1

Broth dilution technique, (a) The ampicillin-containing broth is serially diluted in tubes that have been filled with 0.5
ml of a nutrient broth. The growth and sterility control tubes receive no antibiotic, (b) After the antimicrobial dilutions
are completed, 0.1 ml of the appropriately diluted organism suspension, in this case E. coli, is added to all except
the sterility control tube. The number on each tube is the final concentration of ampicillin in that tube (|xg/ml).

Tube Number

(a)

(b)

0.5 m

nrnpicmm

Broth added

0.5

iiiifiuMy

Tube Number

0.1 ml

cofi

rr.l

0.5

a. 5

\^J

0.5

a. 5

ml I

0.5

discarded

FT PT

0.5

G - growth control, 5 = sterility control

0.5

<^>

Results

Examine each tube for the presence or absence of turbidity. Record the results in the chart and indicate the MIC of ampicillin
for the E. coli strain tested.

Antimicrobial

Concentration

fog/ml)

Growth
Control

Sterility
Control

Growth (+ or-)

MIC =

ixg/ml

EXPERIMENT 15.3 Bacterial Resistance to Antimicrobial Agents: Enzymatic

The activity of antimicrobial agents is usually very specific, affecting primarily essential bacterial cell structures or biochemical
processes. For example, penicillin interferes with bacterial cell wall synthesis, gentamicin inhibits protein synthesis, and sulfonamides
block folic acid synthesis. During the few decades of widespread antimicrobial agent usage, it has become evident that bacteria have
the ability to inactivate or in some way circumvent the activity of almost every known agent. Resistance to antimicrobial agents
can result from a mutation in a gene on the bacterial chromosome, or by acquisition from another organism of a plasmid (extra-
chromosomal DNA) that bears one or more "resistance" genes (R-factor). Acquisition of an R-factor can suddenly render a pre-
viously susceptible bacterium resistant to multiple antimicrobial agents. One of the most common mechanisms of bacterial resis-
tance is the production of specific enzymes (see also Exercise 18) that destroy antimicrobial agents before they can affect the
bacterium. For example, penicillinase is an enzyme that inactivates penicillin by breaking open a particular structure on the peni-
cillin molecule called a beta-lactam ring (a synonym for penicillinase is beta-lactamase) (fig. 15.2). A gene on a plasmid in the bac-
terial cell provides instructions for formation of this enzyme. Although carriage of the penicillinase plasmid once appeared to be

Antimicrobial Agent Susceptibility Testing and Resistance

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

Figure 15.2 Penicillin G (shown) and many of its derivatives are inactivated by a beta-lactamase (penicillinase). The enzyme

breaks open the beta-lactam ring, which is a common part of the molecular structure of these antimicrobial agents

CH 3

CH 3
HOOC

\«/

H H

c— c

I;
c

t^IM— C

Beta-lactam ring

confined to certain strains of staphylococci and gram- negative bacilli, it is now found in some strains of bacteria that previously
were considered to be universally susceptible to penicillin or its derivatives. These include Haemophilus influenzae, a. cause of severe
infections in children, before an effective vaccine became available, and Neisseria gonorrhoeae, the agent of gonorrhea.

Bacterial enzymes can also be responsible for resistance to antimicrobial agents other than penicillin. Gentamicin and
chloramphenicol, for example, may be inactivated by enzymes specific for these drugs, but there are additional mechanisms by
which bacteria may resist the action of certain antimicrobial agents. These include alterations in critical bacterial enzymes or pro-
teins such that they can no longer be directly affected by the drug; or changes in the bacterial cell wall or membrane that make
the cell less permeable, preventing entrance of the agent.

Routinely, the clinical microbiology laboratory tests for bacterial susceptibility or resistance by the methods described
in Experiments 15.1 and 15.2. Alternatively, however, if you are interested only in the response of a given organism to a partic-
ular antimicrobial agent (e.g., Neisseria gonorrhoeae to penicillin), you can test the organism for its ability to produce a sufficient
amount of an enzyme that specifically inactivates that drug. If the organism can be shown to possess the enzyme, it is considered
to be resistant to the antimicrobial agent in question. One such test is illustrated in the following experiment, using a penicillin-
susceptible organism and one that is resistant to penicillin because it produces penicillinase. The test uses a filter paper disk con-
taining the chromogenic (color-producing) cephalosporin, nitrocefin. Like penicillin, the cephalosporins are degraded by beta-
lactamases. When the test disk is inoculated with a penicillinase-producing organism, the yellow nitrocefin is broken down to a
red end product.

Purpose

To detect penicillinase production by a test bacterial strain

Materials

Filter paper disks impregnated with nitrocefin for performing the beta-lactamase test

Sterile water or saline

Clean glass slides

Forceps

Plate culture of a penicillin-resistant Staphylococcus aureus

Plate culture of a penicillin-susceptible Bacillus subtilis

Procedures

1 . Place two small drops of water or saline on the surface of a clean glass slide.

2. Pick up a beta-lactamase disk with your forceps and place it in contact with one drop of fluid.

3. Repeat this procedure with a second disk, placing it on the second drop of fluid. Do not oversaturate the disks.

4. With your sterilized and cooled inoculating loop, pick up a portion of a B. subtilis colony and rub it across the surface of
the first disk.

5. Rub a portion of a S. aureus colony across the surface of the second disk.

6. Observe the areas on the beta-lactamase disks where the organisms were inoculated for up to 30 minutes. A positive result
is usually seen within 3 to 4 minutes.

100

Destruction of Microorganisms

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

Results

1. A change in the color of the bacterial growth rubbed on the disk from yellow to red is a positive test indicating
degradation of nitrocefin.

2. Record your results in the chart.

Organism

Color on strip after 30 min.

Penicillinase + or -

B. subtilis

S. aureus

EXPERIMENT 15.4 Bacterial Resistance to Antimicrobial Agents: Mutation

In Experiment 15.3, you detected bacterial resistance resulting from an enzyme whose production was directed by a gene on a
bacterial plasmid. In this experiment, you will detect resistance resulting from a mutation in a gene on the bacterial chromosome.
Mutations occur at varying rates in the bacterial cell, usually between 1 in 10 to 1 in 10 divisions. Bacteria are haploid; that is,
they have only one unpaired chromosome in contrast to the multiple, paired (diploid) chromosomes seen in most higher organ-
isms. Because of this haploid nature, recessive mutations do not occur as they do in diploid organisms and therefore, bacterial mu-
tations are more easily detectable. In addition, bacteria multiply to large populations rapidly (usually 10 cells in an overnight
broth culture) so that mutants could be expected to arise in a short time. Most bacterial mutations go unrecognized and the mu-
tants may not survive unless the mutation provides a selective advantage for the cell, such as the ability to survive in the presence
of an antimicrobial agent that is lethal for the wild-type (nonmutated) population.

Streptomycin is an antimicrobial agent that, like gentamicin, inhibits protein synthesis by acting on the bacterial
ribosome. E. coli organisms become resistant to streptomycin with just one mutation so that, as we shall see, this organism-
antimicrobial agent combination is convenient to use to illustrate the mechanism of chromosomal resistance.

Purpose

To select E. coli mutants resistant to streptomycin

Materials

Tubes containing 19 ml of nutrient agar (first session)

Tubes containing 20 ml of nutrient agar (second session)

Flasks containing 49 ml of nutrient broth

Sterile petri plates

Streptomycin solution (20 mg/ml)

18- to 24-hour broth culture of Escherichia coli

1-ml pipettes

Tubes continine 0.5 ml sterile water

Procedures

1. During this experiment, you will have to perform several steps quickly before the agar in the tubes solidifies. Examine
figure 15.3 beforehand to be certain you know how you will proceed before removing the tubes from the water bath.

2. Place 3 melted tubes of nutrient agar into a 50°C water bath.

3. With your marking pen or pencil, label one tube of melted agar, one flask of broth, and one petri plate "SM 100" (that is,
with 100 juug of streptomycin/ml) . Label another tube of melted agar, one flask of broth, and one petri plate "SM 250"
(with 250 juug of streptomycin/ml). Label the third tube of melted agar, one flask of broth, and one petri plate "No SM"
(without streptomycin) . The last tube and flask serve as your controls.

4. Add 0.1 ml of the streptomycin solution to the melted tube labeled "SM 100" and 0.25 ml streptomycin to the tube
labeled "SM 250."

Antimicrobial Agent Susceptibility Testing and Resistance

101

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

Figure 1 5.3 Flow chart for performing Experiment 15.4.

Experiment step

Label

4 Add streptomycin

SM100

0.1 ml

SM250

025 ml

NoSM

None

0.25 ml

Experiment step

0.6 ml

None

Add E. coli

Pour

Incubate

9-13 Prepare plates

(see step 1 for
labeling directions)

1 ml

MMo SMJ

1 ml

ir y f

Suspend colonies in water

Streak to
appropriate

section

(streptomycin added to 0.1 ml

tubes of agar: steps 11-13)

0.25 ml

None

0.1 ml

1 ml

1 m

0.25 ml

None

Incubate

5. Immediately add 1 ml of the overnight culture of E. coli to each agar tube containing streptomycin and the control tube
without streptomycin. Mix well by rotating each tube between the palms of your hands (not by shaking) and quickly pour
into the petri plates labeled to correspond to the tubes. Set the plates aside to harden.

6. Add 0.25 ml of the streptomycin solution to the flask of broth labeled "SM 100" and 0.6 ml to the flask labeled "SM 250."

7. Add 1 ml of the E. coli culture to each flask with streptomycin and the control flask without streptomycin.

8. Once the plates have hardened (step 5), seal around their edges with strips of Parafilm as demonstrated by the instructor.
Incubate all plates and flasks at 35°C. At the next session, you will determine whether colonies resistant to streptomycin
have arisen (steps 9 through 18).

9. Label two tubes of melted nutrient agar "SM100," label two tubes "SM 250," and two tubes "No SM." Place all tubes in a
50°C water bath.

10. Label the bottoms of six petri dishes as follows (refer to the figure): "agar SM 100," "agar SM 250," "agar No SM," "broth
SM 100," "broth SM 250," "broth No SM." Now divide each of the 6 plates into three sections with your marking pen or
pencil. Label the sections of each plate as follows: "SM 100," "SM 250," "No SM."

11. To each of the two tubes of melted agar (step 9) labeled "SM 100," add 0.1 ml of the streptomycin solution. Pour one into
the petri plate labeled "agar SM 100" and one into the plate labeled "broth SM 100."

12. To each of the two tubes of melted agar labeled "SM 250," add 0.25 ml of the streptomycin solution and pour into the
appropriate plates labeled "SM 250" as in step 11.

13. Pour the last two tubes of agar without streptomycin into the corresponding petri plates. Set plates aside to harden.

14. Examine the broths and plates inoculated at the previous session.

102

Destruction of Microorganisms

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

15. Record your observations of growth or no growth in the chart.

Streptomycin
Concentration

Plates (No. of Colonies*)

Broths (Turbidity + or -)

1 00 fxg/ml

250 fxg/ml

None (control)

*lf the number of colonies is greater than 300, record as TNTC (too numerous to count).

16. From each agar plate on which you see bacterial growth, suspend a few colonies in a tube of sterile water. Streak a loopful
of the suspension onto the correct section of the 3 freshly prepared agar plates labeled "agar." For example, colonies
growing on the plate that contained 100 Jig of streptomycin/ml, will be streaked onto the three sectors labeled "SM 100"
on each plate.

17. Streak a loopful from each of the three flasks onto the corresponding sectors of the plates labeled "broth."

18. Seal all plates with Parafilm and incubate at 35°C.

19. Examine the plates at the next session and record your results in the chart.

Growth (+ or -)

Agar

Broth

Streptomycin
Concentration

SM 100

SM250

NoSM

SM 100

SM250

NoSM

1 00 fjig/ml

250 |xg/ml

None

State your interpretation of these results.

Do you have any colonies on your plates that arose in the presence of streptomycin but do not grow when subcultured to media
without streptomycin? What would be the explanation for this phenomenon?

Questions

1 . Define an antimicrobial agent

Antimicrobial Agent Susceptibility Testing and Resistance

103

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

2. What is meant by antimicrobial resistance? Susceptibility?

3. Why are pure cultures used for antimicrobial susceptibility testing?

4. Would it be acceptable to use a mixed culture for this test? Why:

5. List three factors that can influence the accuracy of the test.

6. If a McFarland 0.5 standard contains 1X10 organisms per milliliter, how many bacteria were added to each ampicillin
containing tube in Experiment 15.2?

7. When performing a broth dilution test, why is it necessary to include a growth control tube? A sterility control tube:

104

Destruction of Microorganisms

Morello-Mizer-Granato:

II. Destruction of

6. Chemical Antimicrobial

©The McGraw-Hill

Laboratory Manual and
Workbook in Microbiology,
7/e

Microorganisms

Agents

Companies, 2003

8. How can the minimum bactericidal concentration of an antimicrobial agent be determined from an MIC assay:

9. Could an organism that is susceptible to an antimicrobial agent in laboratory testing fail to respond to it when that drug is
used to treat the patient? Explain.

10. Are antibacterial agents useful in viral infections? Explain.

1 1 . Why is it better to use the word susceptible rather than the word sensitive in describing an organism's response to a drug?
When speaking of the patient, what does the term drug sensitivity mean?

12. Describe a mechanism of bacterial resistance to antimicrobial agents.

13. If the laboratory isolates S. aureus from five patients on the same day, is it necessary to test the antimicrobial susceptibility of
each isolate? Why?

Antimicrobial Agent Susceptibility Testing and Resistance

105

Morello-Mizer-Granato: III. Diagnostic 7. Principles of Diagnostic

Laboratory Manual and Microbiology in Action Biology

Workbook in Microbiology,
7/e

Section

Principles of Diagnostic
Microbiology

Culture of Clinical Specimens; Identifying
Isolated Microorganisms; Antigen Detection

and Nucleic Acid Assays

For more than 100 years, from the time Louis Pasteur (1822-1895) reformu-
lated the germ theory of disease, and Robert Koch (1843-1910) developed his
famous "postulates" for establishing the relationship of microbes to disease,
clinical microbiologists have been at work isolating and identifying the
causative agents of infections. In principle, many of the methods in common
use today are the same as those developed more than a century ago. However,
a great deal has been learned about the biochemical, immunologic, and mo-
lecular characteristics of microbes. This knowledge has greatly improved the
speed, ease, and precision with which today's microbiologists identify patho-
genic microorganisms.

Even with technical advances that allow rapid microbial detection and iden-
tification (sometimes directly in the patient specimen), an understanding of the meta-
bolic behavior of microorganisms in culture is essential. In most instances, prompt,
accurate recognition of pathogenic species is still achieved by choosing appropriate
culture media for isolating these organisms from clinical specimens and by selecting
proper tests for determining their characteristic metabolic behavior.

In the exercises of Section VII, classic methods for isolating and identi-
fying microorganisms will be described and performed. Some of the newer assays
are also described.

111

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Name

Class

Date

Exercise

Primary Media for Isolation
of Microorganisms

As we have seen, many clinical specimens contain a mixed flora of microorganisms. When these
specimens are set up for culture, if only one isolation plate were inoculated, a great deal of time
would be spent in subculturing and sorting through the bacterial species that grow out. Instead,
the microbiologist uses several types of primary media at once (i.e., a battery) to culture the spec-
imen initially. In general, the primary battery has three basic purposes: (1) to culture all bacterial
species present and see which, if any, predominates; (2) to differentiate species by certain charac-
teristic responses to ingredients of the culture medium; and (3) to selectively encourage growth of
those species of interest while suppressing the normal flora.

The basic medium on which a majority of bacteria present in a clinical specimen will
grow contains agar enriched with blood and other nutrients required by pathogens. The blood,
which provides excellent enrichment, is obtained from animal sources, most often from sheep. The
use of human blood (usually obtained from outdated collections in blood banks) in culture media
is not recommended because it may contain substances such as antimicrobial agents, antibodies,
and anticoagulants that are either inhibitory to the growth of fastidious microorganisms or inter-
fere with characteristic reactions.

In addition to basic nutrients, differential media contain one or more components, such
as a particular carbohydrate, that can be used by some microorganisms but not by others. If the mi-
croorganism uses the component during the incubation period, a change occurs in an indicator
that is also included in the medium (see colorplates 16 and 17).

Selective media contain one or more components that suppress the growth of some mi-
croorganisms without seriously affecting the ability of others to grow. Such media may also con-
tain ingredients for differentiating among the species that do survive.

When a battery of several culture media such as just described is streaked upon receipt
of a clinical specimen, the first results indicate what types of bacteria are present, in general how
many, and which did or did not use the differential carbohydrate. Also, the species of particular in-
terest on the selective medium (if that species was present in the specimen) has been singled out
and differentiated. Thus, the process of identification of isolated pathogens is already well under
way after 24 hours of incubation of specimen cultures.

Purpose

To observe the response of a mixed bacterial flora in a clinical specimen to a battery of primary
isolation media

Materials

Nutrient agar plates

Blood agar plates

Eosin methylene blue agar plates (EMB)

Mannitol salt agar plates (MSA)

Simulated fecal suspension, containing Escherichia coli, Pseudomonas aeruginosa, and Staphylococcus
epidermidis

Demonstration plates:

Mannitol salt plate streaked with Staphylococcus aureus on one side (pure culture), Escherichia coli
on the other (pure culture)

Eosin methylene blue plate streaked with Staphylococcus aureus and Escherichia coli

112

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Table 16.1 summarizes the most commonly used enriched, selective, and differential
media, indicating their purpose as primary media for the isolation of microorganisms. The table
should be reviewed before performing the exercise.

Table 16.1 Culture Media for the Isolation of Pathogenic Bacteria from Clinical Specimens

Media

Classification

Selective and Differential Agent(s)

Type of Organisms Isolated

Chocolate agar

Enriched

1 % hemoglobin and supplements

Most fastidious pathogens
such as Neisseria and
Haemophilus

Blood agar plates (BAP)

Enriched and differential

5% defibrinated sheep blood

Almost all bacteria; differential
for hemolytic organisms

Mannitol salt agar (MSA)

Selective and differential

7.5% NaCI and mannitol for isolation
and identification of most S.
aureus strains

Staphylococci and micrococci

MacConkey agar

Selective and differential

Lactose, bile salts, neutral red, and
crystal violet

Gram-negative enteric bacilli

Eosin methylene blue agar (EMB)

Selective and differential

Lactose, eosin Y, and methylene blue

Gram-negative enteric bacilli

Hektoen enteric agar (HE)

Selective and differential

Lactose, sucrose, bile salts, ferric
ammonium sulfate, sodium
thiosulfate, bromthymol blue, acid
fuchsin

Salmonella and Shigella

species (enteric pathogens)

Phenylethyl alcohol agar (PEA)

Selective

Phenylethyl alcohol (inhibits gram
negatives)

Gram-positive bacteria

Colistin nalidixic acid agar (CNA)

Selective

Colistin and nalidixic acid (inhibit
gram negatives)

Gram-positive bacteria

Modified Thayer-Martin agar (MTM)

Selective

Hemoglobin, growth factors, and
antimicrobial agents

Pathogenic Neisseria species

Procedures

1. Inoculate the simulated fecal specimen on nutrient agar, blood agar, EMB, and MSA plates. Streak each plate for isolation
of colonies. Incubate at 35 °C.

2. Make a Gram stain of the fecal suspension and examine it.

3. Examine the demonstration plates (do not open them) and record your observations.

Results

1. Demonstration plates:

a. Describe the appearance of S. aureus on
Mannitol salt agar

EMB agar

Primary Media for Isolation of Microorganisms

113

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

b. Describe the appearance of E. coli on
Mannitol salt asar

EMB agar

2. Simulated fecal specimen cultures.

Medium

Gross Morphology

of Each

Colony Type

Gram-Stain Reaction

and Microscopic Morphology

of Each Colony Type

Presumptive
Identification*

Based on medium growth, colonial morphology, Gram-stain reaction, and microscopic morphology.

Questions

1. Define a differential medium and discuss its purpose

2. Define a selective medium and describe its uses.

3. Why is MacConkey agar selective as well as differential?

114

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

4. Why is blood agar useful as a primary isolation medium?

5 . How can one distinguish E. coli from P. aeruginosa on

Nutrient asar?

Blood agar:

EMB agar:

6. What is the major difference between Modified Thayer-Martin (MTM) and chocolate agar? When would you use MTM
rather than chocolate agar?

7. If you wanted to isolate S. aureus from a pus specimen containing a mixed flora, what medium would you choose to get
results most rapidly? Why?

8. What is the value of making a Gram stain directly from a clinical specimen?

9. Why is aseptic technique important in the laboratory? In patient care:

Primary Media for Isolation of Microorganisms

115

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Morello-Mizer-Granato: III. Diagnostic 7. Principles of Diagnostic

Laboratory Manual and Microbiology in Action Biology

Workbook in Microbiology,
7/e

Name

Class Date

Exercise I / Some Metabolic Activities of Bacteria

Microbial metabolic processes are complex, but they permit the microbiologist to distinguish
among microorganisms grown in culture. Bacteria, especially, are identified by inoculating pure,
isolated colonies into media that contain one or more specific bio chemicals. The biochemical re-
actions that take place in the culture can then be determined by relatively simple indicator reagents,
included in the medium or added to the culture later.

Some bacteria ferment simple carbohydrates, producing acidic, alcoholic, or gaseous
end products. Many different species are distinguished on the basis of the carbohydrates they do or
do not attack, as well as by the nature of end products formed during fermentation. Still others
break down more complex carbohydrates, such as starch. The nature of products formed in amino
acid metabolism also provides information as to the identification of bacterial species. The pro-
duction of visible pigments distinguishes certain types of bacteria.

Working with pure cultures freshly isolated from clinical specimens, the microbiologist uses
a carefully selected battery of special media to identify their characteristic biochemical properties.

EXPERIMENT 17.1 Simple Carbohydrate Fermentations

Media for testing carbohydrate fermentation are often prepared as tubed broths, each tube containing a small inverted "fermen-
tation" (or Durham) tube for trapping any gas formed when the broth is inoculated and incubated (see colorplate 18). Each broth
contains essential nutrients, a specific carbohydrate, and a color reagent to indicate a change in pH if acid is produced in the cul-
ture (the broth is adjusted to a neutral pH when prepared). Organisms that grow in the broth but do not ferment the carbohy-
drate produce no change in the color of the medium, and no gas is formed. Some organisms may produce acid products in fer-
menting the sugar, but no gas, whereas others may form both acid and gas. In some cases, organisms that do not ferment the
carbohydrate use the protein nutrients in the broth, thereby producing alkaline end products, a result that is also evidenced by a
change in indicator color (see colorplate 19).

Purpose To distinguish bacterial species on the basis of simple carbohydrate fermentation

Materials Tubed phenol red glucose broth

Tubed phenol red lactose broth ^ with Durham tubes

Tubed phenol red sucrose broth

Slant cultures of Escherichia coli, Serratia marcescens, Pseudomonas aeruginosa, and Proteus vulgaris

Procedures

1. Inoculate growth from each of the four cultures into separate tubes of each of the three carbohydrate broths. Be certain no
bubbles are inside the Durham tubes before inoculation.

2. Label each of the 12 inoculated tubes with the name of the carbohydrate it contains and the name of the bacterial culture.

3. Incubate at 35 °C for 24 hours.

Some Metabolic Activities of Bacteria

117

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Results

Record your results in the following table. Use these symbols to indicate specific changes observed in the broths

A = acid production
K = alkaline color change
N = neutral (no change in color)
G = gas formation

Name of Organism

Glucose

Lactose

Sucrose

EXPERIMENT 17.2 Starch Hydrolysis

Some microorganisms split apart (hydrolyze) large organic molecules and then use the component parts in further metabolic
processes. Starch is a polysaccharide that is hydrolyzed by some bacteria. When iodine is added to the intact starch molecule, a
blue-colored complex forms. If starch is hydrolyzed by bacterial enzymes, however, it is broken down to simple sugars (glucose
and maltose) that do not complex with iodine, and no color reaction is seen.

The medium for this test is a nutrient agar containing starch, prepared in a petri plate. The organism to be tested is
streaked on the plate. When the culture has grown, the plate is flooded with Gram's iodine solution. The medium turns blue in
all areas where the starch remains intact. The areas of medium surrounding organisms that have hydrolyzed the starch remain clear
and colorless (see fig. 17.1).

Figure 17.1 Bacillus subtilis colony on a culture medium containing starch. The culture plate has been flooded with a weak

iodine solution, which reveals a zone of clearing around the colony (arrow). This zone represents the area where the
starch has been hydrolyzed so that it is no longer available to react with the iodine solution.

118

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Purpose

To distinguish bacterial species on the basis of starch hydrolysis

Materials

Starch agar plates

Slant cultures of Escherichia coli, Pseudomonas aeruginosa, and Bacillus subtilis

Gram's iodine solution

Procedures

1. Take one starch plate, invert it, and with your marking pencil mark three triangular compartments on the back of the dish.

2. Inoculate one section of the agar with E. coli, using back-and-forth streaking; another section with B. subtilis; and the third
with P. aeruginosa.

3. Label each section of the plate on the back of the dish with the name of the organism streaked in that area.

4. Incubate 24 to 48 hours at 35°C.

5. When the cultures have grown, drop Gram's iodine solution onto the plate until the entire surface is lightly covered.

Results

Read and record your results in the table.

Name of
Organism

Color around
Colony

Positive or

Negative for

Starch Hydrolysis

EXPERIMENT 17.3 Production of Indole and Hydrogen Sulfide, and Motility

Indole is a by-product of the metabolic breakdown of the amino acid tryptophan used by some microorganisms. The presence of
indole in a culture grown in a medium containing tryptophan can be readily demonstrated by adding Kovac's reagent to the cul-
ture. If indole is present, it combines with the reagent to produce a brilliant red color. If it is not present, there will be no color
except that of the reagent itself. This test is of great value in the battery used to identify enteric bacteria, as you will see in Exercises
24 and 25.

Hydrogen sulfide is produced when amino acids containing sulfur are metabolized by microorganisms. If the medium
contains metallic ions, such as lead, bismuth, or iron (in addition to an appropriate amino acid), the hydrogen sulfide formed dur-
ing growth combines with the metallic ions to form a metal sulfide that blackens the medium (see colorplates 17 and 19).

The most convenient medium for testing for indole and/or hydrogen sulfide production is SIM medium (SIM is an
acronym for sulfide, mdole, and motility) . This is a tubed semisolid agar that can also be used to demonstrate bacterial motility. It
is inoculated by stabbing the wire loop (or preferably a straight wire inoculating needle) straight down the middle of the agar to
about one-fourth the depth of the medium and withdrawing the wire along the same path.

Some Metabolic Activities of Bacteria

119

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Purpose

Materials

To observe how a single medium can be used to test for three distinguishing features of bacterial
growth

Tubes of SIM medium

Xylene

Ko vac's reagent

5 -ml pipettes

Bulb or other pipette aspiration device

Slant cultures of Escherichia coli, Proteus vulgaris, and Klebsiella pneumoniae

Broth cultures of Escherichia coli, Proteus vulgaris, and Klebsiella pneumoniae

Procedures

1. Inoculate growth from each of the three slant cultures into separate tubes of SIM medium. Stab the inoculating wire
straight down through the agar for a distance of about one-fourth of its depth. Quickly withdraw the wire along the same
path (do not move it around in the agar) .

2. Incubate the tubes at 35°C for 24 hours.

3. Examine the tubes for evidence of hydrogen sulfide production (browning or blackening of the medium). Record results.

4. Examine the tubes for evidence of motility of the organism. A motile species grows away from the line of stab into the
surrounding agar. Lines of growth, or even general turbidity, can be seen throughout the tube. The growth of a nonmotile
organism is restricted to the path of the stab (fig. 17.2). Record your observations.

5. Set up a hanging-drop or wet-mount preparation of each broth culture to confirm results observed in SIM medium for
motility (see Exercise 3 for procedure) .

6. Perform the Kovac test for indole.

Using a pipette bulb or other aspiration device, pipette 0.5 ml of xylene into the SIM tube (it will layer over the top

surface of the agar).

Pipette 0.5 ml of Kovac's reagent in the same way as you did the xylene and add it to the SIM tube.

Observe the color of the xylene layer, and record.

Figure 17.2 Sketch (left) and photograph (right) of semisolid agar tubes stabbed for motility test, (a) Pattern of growth of a motile

organism. The entire medium is turbid with the growth of the organism, which has moved away from the stab line,
(b) Pattern of growth of a nonmotile organism. Only the stab line is turbid with growth.

■-; (V-:i\ : ' : : |K* : ?» : ^ ; ^V # 5?-

- •. * *, • # *1 •* •' ■ *- . " . .. • »
■ '.' .*•*•■ '.•','*' «**■«" «■. .••* 1
■•* •*-." " * *•" ^" **--'■■«' *.#*

- ■>■ : ■;". -• '.••"•••rj , -\ -*.'•'. v:

*«. 't ■ ■■•*•*.•-■* *T* # * *

,..,-,* ; * . . „ ■,.,*, -• ■■ -.,'••■

(a)

(b)

(a)

(b)

120

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Results

Record your observations and results in the table

Sulfide

Indole

Motility

Name of Organism

SIM Medium

Hanging Drop

Questions

1. What is the color of phenol red at an acid pH?

2. What is the function of a Durham tube?

3. Why is iodine used to detect starch hydrolysis:

4. Name one indole-positive organism.

Some Metabolic Activities of Bacteria

121

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

5. How is indole produced in SIM medium? How is it detected?

6. How is hydrogen sulfide demonstrated in this medium?

7. Name two methods for determining bacterial motility.

8. Why is it essential to have pure cultures for biochemical tests?

9. Could a pH-sensitive color indicator be used to reveal the presence of a contaminant in a fluid that should be sterile?
Explain.

122

Diagnostic Microbiology in Action

Morello-Mizer-Granato: III. Diagnostic 7. Principles of Diagnostic

Laboratory Manual and Microbiology in Action Biology

Workbook in Microbiology,
7/e

Name

Class Date

Exercise I X Activities of Bacterial Enzymes

Enzymes are the most important chemical mediators of every living cell's activities. These organic
substances catalyze, or promote, the uptake and use of raw materials needed for synthesis of cel-
lular components or for energy. Enzymes are also involved in the breakdown of unneeded sub-
stances or of metabolic side products that must be eliminated from the cell and returned to the
environment.

As catalysts, enzymes promote changes only in very specific substances or substrates, as
they are often called. Thus, in the previous exercise, the changes produced in simple carbohydrates
and in starch substrates were brought about by different, specific enzymes. We have seen the activ-
ity of an enzyme with a different kind of outcome, the breakdown of an antimicrobial agent (see
Experiment 15.3), but the principle is exactly the same. In the latter instance, the b eta-lac tamase
enzyme penicillinase brought about a change in the substrate penicillin.

Since enzymes appear to be limited to particular substrates, it follows that each bacte-
rial cell must possess a large battery of different enzymes, each mediating a different metabolic
process. They are identified in terms of the type of change produced in the substrate. In naming
them, the suffix -ase is usually added to the name of the substrate affected. Thus, urease is an en-
zyme that degrades urea, gelatinase breaks down gelatin (a protein) , penicillinase inactivates penicillin,
and so on.

In this exercise, we shall see how many bacterial enzymes are demonstrated and how
their recognition in bacterial cultures leads to identification of species.

EXPERIMENT 18.1 The Activity of Urease

Some bacteria split the urea molecule in two, releasing carbon dioxide and ammonia. This reaction, mediated by the enzyme ure-
ase, can be seen in culture medium in which urea has been added as the substrate. Phenol red is also added as a pH indicator.
When bacterial cells that produce urease are grown in this medium, urea is degraded, ammonia is released, and the pH becomes
alkaline. This pH shift is detected by a change in the indicator color from orange-pink to dark pink (see colorplate 20).

Rapid urease production is characteristic of Proteus species and of a few other enteric bacteria that at one time were
classified in the Proteus genus. This simple test can be useful, therefore, in distinguishing these organisms from other bacteria that
resemble them.

Purpose To observe the activity of urease and to distinguish bacteria that produce it from those

that do not

Materials Tubes of urea broth or agar

Slant cultures of Escherichia coli and Proteus vulgaris

Procedures

1. Inoculate a tube of urea broth or agar with E. coli, and another with the Proteus culture

2. Incubate the tubes at 35°C for 24 hours.

Activities of Bacterial Enzymes

123

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Results

Record your observations

Color of Urea Medium
Before Culture

Color of Urea Medium
After Culture

Urease

Name of Organism

Positive

Negative

EXPERIMENT 18.2 The Activity of Catalase

Many bacteria produce the enzyme catalase, which breaks down hydrogen peroxide, liberating oxygen. The simple test for
catalase can be very useful in distinguishing between organism groups. The hydrogen peroxide can be added directly to a slant
culture or to bacteria smeared on a clean glass slide. The test should not be performed with organisms growing on a blood-
containing medium because catalase is found in red blood cells.

Purpose

To observe bacterial catalase activity

Materials

3% hydrogen peroxide

Capillary pipettes

Pipette bulb or other aspiration device

Nutrient agar slant cultures of Staphylococcus epidermidis and Enterococcus faecalis

Clean glass slides

China-marking pencil or marking pen

Procedures

1. Divide a clean glass slide into two sections with your marking pen or pencil.

2. With a sterilized and cooled inoculating loop, pick up a small amount of the Staphylococcus culture from the nutrient agar
slant. Smear the culture directly onto the left-hand side of the slide. The smear should be about the size of a pea.

3. Sterilize the loop again and smear a small amount of the Enterococcus culture on the right-hand side of the slide.

4. With the capillary pipette, place one drop of hydrogen peroxide over each smear. Be careful not to run the drops together.
Observe the fluid over the smears for the appearance of gas bubbles (see fig. 18.1). Record the results in the chart. Discard
the slide in a jar of disinfectant.

Figure 18.1 Slide catalase test. Staphylococcus epidermidis on the left produces a strong positive catalase reaction.

Enterococcus faecalis on the right (cloudy area in drop of hydrogen peroxide) is negative in the catalase test.

124

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

5. Hold the slant culture of the Staphylococcus in an inclined position and pipette 5 to 10 drops of hydrogen peroxide onto the
surface with the bacterial growth. Observe closely for the appearance of gas bubbles.

6. Repeat the procedure with the Enterococcus culture. Note whether oxygen is liberated and bubbling occurs.

Results

Record your observations and conclusions in this chart.

Slide Preparation

Tube Culture

Organism

Bubbling
(+ or -)

Catalase
(+ or -)

Bubbling
(+ or -)

Catalase
(+ or -)

Staphylococcus
epidermidis

Enterococcus
faecal is

EXPERIMENT 1 8.3 The Activity of Gelatinase

Gelatin is a simple protein. When in solution, it liquefies at warm temperatures above 25°C. At room temperature or below it be-
comes solid. When bacteria that produce the enzyme gelatinase are grown in a gelatin medium, the enzyme breaks up the gela-
tin molecule and the medium cannot solidify even at cold temperatures. An alternative method for detecting gelatinase produc-
tion is the use of X-ray film that is coated with a green gelatin emulsion. Organisms that produce gelatinase remove the emulsion
from the strip.

Purpose

To observe the usefulness of a gelatinase test in distinguishing between bacterial species

Materials

Tubes of nutrient gelatin medium

1 X X-inch strips of exposed, undeveloped X-ray film or gelatin strip

Tubes containing 0.5 ml sterile saline

Slant cultures of Sermtia marcescens and Providencia stuartii

Procedures

1. Inoculate each of the two cultures into a separate tube of gelatin, stabbing the inoculating wire straight down through the
solid column of medium.

2. Incubate the inoculated tubes and one wmnoculated tube of gelatin medium at 35°C.

3. Inoculate each of the two cultures into a separate tube of 0.5 ml saline. The suspension should be very turbid.

4. Insert a strip of the X-ray or gelatin film into each saline suspension.

5. Incubate the tubes at 35°C. Observe at 1, 2, 3, 4, and 24 hours for removal of the gelatin emulsion from the strip with
subsequent appearance of the transparent strip support (see fig. 18.2).

6. After 24 hours, examine the nutrient gelatin tubes. The uninoculated control as well as the two inoculated cultures should
be liquid. Place all three tubes in the refrigerator for 30 minutes. If at the end of this period all tubes are solidified, replace
them in the incubator. If any tube is liquefied but the others are solid, record this result.

7. If tubes are reincubated, examine them every 24 hours, placing them in the refrigerator for 30 minutes each time, as in
procedure 6.

Activities of Bacterial Enzymes

125

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Figure 18.2 Gelatin strip test. The organism on the left does not hydrolyze gelatin and, therefore, no clearing of the gelatin film is

seen. On the right, the portion of the strip submersed in the organism suspension has cleared, indicating gelatin
hydrolysis.

Results

Tube Method

X-ray film method

Organism

Gelatinase
(+ or -)

No. of hours
(if +)

Gelatinase
(+ or -)

No. of hours
(if +)

Serratia

marcescens

Providencia
stuartii

EXPERIMENT 18.4 The Activity of Deoxyribonuclease (DNase)

Some microorganisms secrete an enzyme that attacks the deoxyribonucleic acid (DNA) molecule. This can be demonstrated by
inoculating a plated agar medium containing the substrate DNA with a culture of the organism that produces the enzyme. The
uninoculated medium is opaque and remains so after the culture has grown. If the plate is then flooded with weak hydrochloric
acid, a zone of clearing appears around colonies that have produced DNase. This clearing occurs because the large DNA mole-
cule has been degraded by the enzyme, and the end products dissolve in the added acid. Intact DNA does not dissolve in weak
acid but rather is precipitated by it; therefore, the medium in the rest of the plate, or around colonies that do not produce DNase,
becomes more opaque. Another way to demonstrate breakdown of DNA by DNase is to flood the plate with 0.1% toluidine blue.
Intact DNA will stain blue, and DNase-producing colonies will be surrounded by a pink zone (see colorplate 21).

Purpose

To distinguish bacterial species that do and do not produce DNase

Materials

One DNA agar plate

Dropping bottle containing 1 iVHCl or 0.1% toluidine blue

Slant cultures of Escherichia coli and Serratia marcescens

126

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Procedures

1. Make a mark on the bottom of the DNA plate, dividing it in half.

2. Heavily inoculate one side of the plate with Escherichia coli by rubbing growth from the slant in a circular area about the
size of a quarter.

3. Inoculate the other side of the plate with Serratia marcescens, in the same manner.

4. Incubate the plate at 35°C for 24 hours.

5. Examine the plate for growth.

6. Drop 1 IVHC1 or 0.1% toluidine blue onto the agar surface until it is thinly covered with fluid.

7. Examine the areas around the growth on both sides of the plate for evidence of clearing or opacity, or a pink color if
toluidine blue was used.

Results

Make a diagram of your observations

Serratia marcescens

DNase positive

DNase negative

Escherichia coli

DNase positive

DNase negative

EXPERIMENT 18.5 The Activity of a Deaminase

Most bacteria possess a battery of enzymes that specifically break down individual amino acids. In the process, the amine group
on the molecule is removed and the amino acid is degraded, the reaction being known as deamination . The deaminases that effect
this type of change are named for the particular amino acid substrate for which they are specific. In this experiment, we will see
the effects of a phenylalanine deaminase (PDase) produced by some bacteria.

When the amino acid phenylalanine is incorporated into a culture medium in which PDase-producing bacteria are
growing, the substrate is degraded to phenylpyruvic acid. The reaction is made visible by adding ferric ions, which react with the
newly produced acid to form a green compound. The appearance of a green color in a medium that was colorless when inocu-
lated is evidence of the activity of the deaminase (see colorplate 22).

Purpose

Materials

To observe the activity of PDase and to distinguish bacteria that produce it from those
that do not

Slants of phenylalanine agar

Dropping bottle containing 10% ferric chloride

Slant cultures of Escherichia coli and Providencia stuartii

Procedures

1. Inoculate each of the two cultures on a separate slant of phenylalanine agar.

2. Incubate the new cultures at 35°C for 24 hours.

Activities of Bacterial Enzymes

127

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

3. Examine the tubes for heavy growth. If it is adequate, run a few drops of 10% ferric chloride solution down the surface of
each slant.

4. Observe the tubes for development of a green color.

Results

Organism

Color

PDase
(+ or -)

Escherichia coli

Providencia stuartii

Questions

1 . What is a catalyst?

2. Define an enzyme and a substrate. What is the value of enzyme tests in diagnostic microbiology:

3. What happens to urea in the presence of urease?

4. What is the substrate of the catalase reaction? Why are bubbles produced in a positive catalase test?

5. Why will a false-positive catalase test result if the organisms are tested on a medium containing blood?

128

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

6. Why is gelatin liquefied in the presence of gelatinase?

7. Describe a positive DNase test.

8. What is a deaminase?

9. For each enzyme, indicate one bacterial species that produces it

Urease

Catalase

Gelatinase

Deoxyribonuclease

Phenylalanine deaminase

Activities of Bacterial Enzymes

129

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Morello-Mizer-Granato: III. Diagnostic 7. Principles of Diagnostic

Laboratory Manual and Microbiology in Action Biology

Workbook in Microbiology,
7/e

Name

Class Date

Exercise 1 M Principles of Antigen Detection

and Nucleic Acid Assays for Detection
and Identification of Microorganisms

As you have seen in Exercises 16—18, the laboratory diagnosis of most infectious diseases involves
the isolation in culture and subsequent identification of a microbial agent from a clinical specimen.
Diagnoses can also be made by detecting antibodies in a patient's serum, as you will learn later in
Exercise 33. Some of these traditional procedures are now being supplanted by new and more rapid
methods that detect the presence of microorganisms or their products directly in patient specimens
without the need for culture. In addition, these methods, which are often referred to as nonculture
methods, can be used instead of biochemical tests to identify organisms that have already grown in
culture. When used judiciously, these nonculture methods not only eliminate the need to perform
culture, but also can be performed within minutes or hours. Thus, the time for reporting the re-
sult to the physician is shortened, and appropriate therapy can be administered to the patient sooner.

Clinical evaluations of nonculture technologies have shown that they are as reliable as,
and in some cases, better than routine culture (i.e., more sensitive in detecting the microbe being
sought). The result does not require growth of living, multiplying organisms but only detection of
certain microbial cell structures or products. Another advantage is that these methods can detect
infectious agents that, as yet, cannot be cultivated in the laboratory. An important example is the
rotavirus, a common cause of infantile diarrhea that spreads rapidly in the hospital environment.
Because this viral agent can now be detected directly in infant stool specimens by a rapid, noncul-
ture method, its recognition helps prevent possible nursery-wide transmission.

Two types of nonculture methods are generally available. One type depends on detec-
tion of microbial antigens, a technology that has come into everyday use in clinical microbiology
laboratories. Some examples are included in experiments you will perform in Section VIII. The
second type of nonculture method uses probes to detect microbial nucleic acids, sometimes in
combination with techniques that greatly expand (amplify) small amounts of microbial DNA or
RNA present in a patient specimen.

This discussion should aid your understanding of the principles of these antigen-
detection and nucleic acid assays.

Antigen Detection Assays

All microorganisms contain a variety of different antigens whose composition is usually pro-
tein or carbohydrate in nature. Antigens may be components of the microbial cell wall, cap-
sule, or intra- or extracellular enzymes. In the animal body, these antigens are recognized as
foreign substances by the host immune system, which responds by producing specific pro-
tein molecules called antibodies. Antibodies bind specifically with the antigen that elicited
their production. For example, in Exercise 7, we learned about the antigenic carbohydrate
capsule of Streptococcus pneumoniae, which binds with its specific antibody in the quellung re-
action (colorplate 10).

The use of an antibody to detect the presence of a specific microbial antigen is
called an immunoassay. The sensitivity of immunoassays depends on the quality of the anti-
body preparation. In the early development of immunoassays, the antibody preparations were
not pure enough to react only with a specific antigen (known as an antigenic determinant)
on a specific microorganism. The result was often a false-positive reaction, in which a mi-
croorganism other than the one being tested for was detected because they shared a com-
mon antigenic determinant.

Principles of Antigen Detection and Nucleic Acid Assays for Detection and Identification of Microorganisms 131

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Through developments in immunology, a more specific type of antibody known
as a monoclonal antibody can now be produced in large quantities. In contrast to the previ-
ously used polyclonal antibodies, monoclonal antibodies react with antigenic determinants
that are unique to one microorganism and not shared by others. As a result, false-positive test
reactions are greatly reduced and a wide variety of antigen-detection tests can now be per-
formed in the clinical microbiology laboratory.

Many immunoassays are available, but three major types are in common use: im-
munofluorescence, latex agglutination, and enzyme immunoassay or EIA. For these immunoassays,
monoclonal antibodies are labeled with (attached to) a "marker" molecule that provides a
means of detecting whether an antigen-antibody reaction has taken place. Polyclonal anti-
body preparations are sometimes used for special purposes. The principles of these three as-
says are described briefly.

Immunofluorescence

In immunofluorescence assays, antibodies are labeled with a fluorescent dye called fluores-
cein. When the antibodies combine with their specific antigen in a preparation, the bright
fluorescence can be visualized with a fluorescence microscope fitted with an ultraviolet illu-
minator and special filters. The test is performed by placing a smear of a clinical sample on a
microscope slide and fixing it with a suitable reagent. In the simplest method, known as a di-
rect fluorescent antibody (DFA) test, the fluorescein-labeled antibody preparation is applied di-
rectly to the specimen slide, which is then incubated, washed, and viewed under the fluo-
rescence microscope. A positive test is indicated by the presence of brightly fluorescing
organisms in the preparation (see colorplates 23, 40, and 53).

For the indirect fluorescent antibody (IFA) test, two antibody preparations are needed.
The first, which is not labeled with the fluorescent dye, contains antibodies against the mi-
crobial agent we wish to detect. If the agent is present in the specimen smear, an antigen-
antibody reaction occurs. To detect this combination, the second antibody, labeled with flu-
orescein, is applied to the preparation. This second antibody has been prepared to react with
the first, unlabeled antibody. Again, a positive result is indicated by bright fluorescence un-
der the microscope.

Figure 19.1 illustrates the principle of direct and indirect fluorescence assays.
Fluorescent antibody tests are in widespread use to diagnose infections caused by a variety of
microbial agents including bacteria, viruses, and protozoa.

Latex Agglutination

In latex agglutination assays, antibodies are attached to latex (polystyrene) beads that serve as
the marker for detecting the antigen-antibody interaction. Each latex particle is about 1 fxm
in diameter and can be charged with thousands of antibody molecules. Antibody-coated la-
tex particles form a milky suspension, but when they are mixed with a preparation contain-
ing specific antigen, the resulting antigen-antibody complex results in visible clumping.
Figure 19.2 illustrates the events associated with the latex particle agglutination reaction.

Latex agglutination tests are usually performed on a glass slide or a specially treated
cardboard surface using small volumes of latex particles and liquid clinical sample. The
reagent is mixed with the clinical sample using a stirrer, and the slide is rocked by hand or
rotated with a mechanical device for several minutes before being examined visually for
clumping of the latex particles. Colorplate 24 illustrates the appearance of positive and neg-
ative latex agglutination slide tests.

In clinical laboratories, latex agglutination tests are used to detect soluble micro-
bial antigens directly in serum or cerebrospinal fluid specimens, or for identifying various
types of bacteria recovered from culture plates.

132

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Figure 19.1

(a) In the direct fluorescent antibody (DFA) test, antibody specific for the microorganism sought is conjugated with
the dye fluorescein. The antibody preparation is added to a specimen fixed to a slide. If the specific microorganism
is present, the preparation will fluoresce when viewed under a fluorescence microscope, (b) In the indirect
fluorescent antibody (IFA) test, the antibody specific for the microorganism is not conjugated with the dye, but will
bind to the specific microorganism on the slide. A second antibody preparation, labeled with fluorescein, has been
prepared to react with the first, unlabeled antibody and will fluoresce when viewed microscopically. (Modified from

L. M. Prescott et al. Microbiology, 4th ed., WCB/McGraw Hil

Direct

Fluorescein-labeled
antibody

Antigen fixed
to slide

(a)

Indirect

Antibody

Antigen fixed
to slide

Fixed
antibody

Fluorescein-labeled
anti-immunoglobulin

Antigen-antibody complex

(b)

Enzyme Immunoassay (EIA)

As in fluorescent antibody tests, the antibody in EIAs is conjugated with a marker that can
be detected when an antigen-antibody reaction has taken place. In EIAs, the marker is an
enzyme, typically alkaline phosphatase or horseradish peroxidase. These enzymes catalyze the
breakdown of a colorless substrate to a colored end-product. To visualize the binding of anti-
gen and the enzyme-linked antibody, the appropriate substrate for the enzyme must be
added. A positive reaction results in the production of a colored end-product that can be de-
tected visually or measured quantitatively in a spectrophotometer.

Two basic formats for EIA testing are in use. In the first, monoclonal antibody
specific for the antigen sought is bound to a solid surface such as plastic tubes, beads, or wells
of a microtiter tray. The clinical sample is added to this solid surface followed by incubation
and washing steps. If the antigen is present in the sample, it will bind to the antibody and
unbound material is washed away Now, the enzyme-labeled antibody is added to detect the
antigen-antibody complex. This step is accomplished either in a direct or indirect manner. In
the direct method, the second antibody, which is conjugated to the enzyme, reacts with anti-
gen bound by the first antibody on the solid surface. In the indirect method, two additional
antibodies are needed to develop the reaction. The first is unlabeled antibody specific for the
bound antigen and the second is an enzyme-labeled antibody that reacts with the first anti-
body. In this way, the indirect EIA is similar to the IFA test. Finally, in both test methods the
substrate for the enzyme is added. The amount of colored end-product that develops indi-
cates the amount of antigen present in the clinical sample. Figure 19.3 illustrates direct and
indirect EIA methods.

EIA kits for detecting certain parasites, rotavirus, and other enteric viruses, and
toxins of diarrhea pathogens, are available in this format. Colorplate 25 illustrates such a kit.

Principles of Antigen Detection and Nucleic Acid Assays for Detection and Identification of Microorganisms

133

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Figure 19.2

Diagram of a latex reaction, (a) When latex particles that are coated with an antibody (for example, group A
Streptococcus antibody) react with a specific antigen (group A Streptococcus antigen), the particles join together
to form clumps that agglutinate on the test slide (lower left corner of (a)). In the control test that is always run in
parallel on the same slide, the same antigen is mixed with latex particles that are not coated with antibody,
therefore, the particles remain in suspension and do not agglutinate. In diagram section (b), the antibody-coated
particles do not react with the nonspecific antigen (for example, group B Streptococcus antigen), therefore, no
clumps are formed, and the test as well as the control suspension shows no agglutination (lower left corner of (b)).

Anti-A antibody

Specific
antigen

Agglutination

Positive
test

Control

(a)

Anti-A antibody

€>

Non-
specific
antigen

No agglutination

Negative
test

Control

,<b>

134

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Figure 1 9.3 Direct and indirect enzyme immunoassays. (Modified from L M. Prescott et al. Microbiology, 4th ed., WCB/McGraw H

(a) Direct enzyme immunoassay

(b) Indirect enzyme immunoassay

Antibody specific for the patient antigen
sought is bound to a solid surface.

Clinical sample is added. If the specific
antigen is present, it will bind to the
antibody.

I Wash

Enzyme-linked antibody specific for
patient antigen then binds to antigen

Wash

Enzyme's substrate ( ■ ) is added,
and reaction produces a visible
color change (#).

Antibody specific for the patient antigen
sought is bound to a solid surface.

Clinical sample is added. If the specific
antigen is present, it will bind to the
antibody.

Wash

Unlabeled antibody specific for patient
antigen then binds to antigen.

Wash

Enzyme-labeled antibody reacts with
first antibody.

Enzyme's substrate ( ■ ) is added,
and reaction produces a visible
color change (•).

Principles of Antigen Detection and Nucleic Acid Assays for Detection and Identification of Microorganisms

135

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Figure 19.4 An enzyme immunoassay kit for "strep" throat. The left side illustrates a negative test, with only the control (C) line

positive. On the right, both the control (C) and patient specimen (T) are positive as illustrated by the appearance of
two lines.

In another format for performing EIA tests, the specific enzyme-labeled antibody
is bound to a porous nitrocellulose or nylon membrane. The membrane is contained in a
disposable plastic cassette with a small chamber to which the liquid clinical sample can be
added (fig. 19.4). An absorbent material on the underside of the membrane serves to draw
the liquid sample through the membrane. If antigen is present in the sample, it will bind to
the membrane-bound antibody as the material passes through the membrane. After the col-
orless substrate is added and passed through the membrane filter, development of a colored
area indicates a positive test (fig. 19.4).

Membrane-bound EIA tests are very popular because they are easy to perform and
reliable results are usually available within 5 to 10 minutes. They are available for direct spec-
imen detection of some bacteria and viruses.

Nucleic Acid Detection Assays

Genes contain the genetic message (genotype) for all forms of life. The expression of the
genotype results in the production of physical characteristics (phenotype) that make each life
form special and unique. All genes are made up of nucleic acids consisting of either DNA or
RNA. In recent years, molecular biologists have been able to determine the order, or se-
quence, in which the nucleotides adenine, thymine, cytosine, and guanine (or uracil in RNA)
occur in these nucleic acid molecules. Sequencing has revealed the entire set of genes (i.e.,
the genome) of many life-forms including various microorganisms, and even humans. By
comparing the nucleotide sequence of genes among various life-forms, scientists can deter-
mine common regions of nucleic acids but, more importantly, they can determine the dif-
ferent nucleotide sequences that make a life-form special and unique.

With this knowledge, and the understanding that the nucleotide base adenine al-
ways bonds to thymine (in DNA) or uracil (in RNA), and guanine always bonds to cytosine,
it is possible to synthesize in the laboratory a single-stranded sequence of nucleotides, known
as a primer, that is complementary to a unique gene sequence in a specific life-form. When
two single nucleic acid strands with complementary base sequences are placed together in
solution, the nucleotide base pairs of each strand bond together to form a double-stranded
molecule, called a duplex or hybrid. This hybridization reaction serves as the basis of two nu-
cleic acid detection methods: probe assays and amplification assays.

Like the antigen detection assays just described, these nucleic acid detection as-
says have come into common use in many clinical microbiology laboratories, either to con-

136

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Figure 19.5

Principles of nucleic acid hybridization. Identification of unknown organism is established by positive hybridization
(i.e., duplex formation) between a probe nucleic acid strand (from known organism) and a target nucleic acid strand
from the organism to be identified. Failure to hybridize indicates lack of homology between probe and target nucleic

acid. From B.A. Forbes et al. Bailey & Scott's Diagnostic Microbiology, "1 1th ed. Mosby.

Reporter molecule

A A A G G G G

T T T C C C C

Sequence
complementary
(homologous) with
probe sequence

Probe (single-stranded
nucleic acid probe from
known organism)

C C G T A C G

Sequence not
complementary
(nonhomologous)
with probe
sequence

Target (nucleic

acid strands

from unknown

organism)

▼ i i Probe
I I target

Duplex formation
(hybridization positive)

-r K C G

^ 6S

No duplex formation
(hybridization negative)

Unknown organism
identified

or
detected

Unknown organism

not identified

detected

firm the identity of a microorganism or to detect its presence directly in a clinical sample.
The basic principles of probe and amplification assays are reviewed here.

Probe Assays

In a probe hybridization assay, one nucleic acid strand, known as the probe, will seek a com-
plementary nucleic acid strand, the target, with which to combine. The probe is derived from
a known microorganism and the target is an unknown microorganism present in a clinical
sample or isolated in culture. Like antigen detection assays, a marker or reporter molecule must
be attached to the probe to determine whether the hybridization reaction has taken place
(see fig. 19.5). Among the more popular reporter molecules are P or I; enzyme conju-
gates of alkaline phosphatase or horseradish peroxidase; and chemiluminescent molecules,
such as acridinium. Chemiluminescent reporter molecules emit light that can be measured

Principles of Antigen Detection and Nucleic Acid Assays for Detection and Identification of Microorganisms

137

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

by using a special instrument called a luminometer. The amount of reporter molecule de-
tected is directly proportional to the amount of hybridization that has occurred.

A positive hybridization reaction indicates that the unknown target is the same as
the organism that served as the probe source. If no hybridization is detected, the target or-
ganism is not present in the sample (see fig. 19.5).

Single-stranded probe molecules can be composed of either DNA or RNA. Thus,
double-stranded hybrids may be DNA-DNA, RNA-RNA, or DNA-RNA. Commercially
available kits in which the probe molecule is DNA and the target molecule is a comple-
mentary strand of ribosomal RNA are popular because a microbial cell has several thousand
copies of ribosomal RNA sequences but only one or two copies of DNA targets. As a result,
these RNA-directed probes are far more sensitive for detecting low numbers of a microor-
ganism in a sample than are DNA-directed probes.

Probe hybridization assays are used to confirm the identity of a wide variety of bac-
teria, fungi, viruses, and protozoa. Although they were once used commonly to detect the sex-
ually transmitted bacterial pathogens, Chlamydia trachomatis and Neisseria gonorrhoeae, directly
in clinical specimens, the more sensitive amplification assays have gained popularity instead.

Amplification Assays

Often, too few bacteria may be present in a clinical specimen to be detected by a probe as-
say. To overcome this problem, a variety of methods referred to as amplification techniques
have been devised. The most popular of these (for which Dr. Kary Mullis won the Nobel
prize) is called the polymerase chain reaction or PCR. In this method, the specimen is heated
to separate bacterial DNA strands, known bacterial primers are added to the mixture, and if
they match the unknown single-stranded DNA, they combine (anneal) with it. Because
the primers are shorter sequences than the original DNA strands, nucleotides and a heat-
resistant Taq polymerase enzyme (originally isolated from a bacterium living in a hot spring
in Wyoming's Yellowstone National Park) are added to the mixture to complete the forma-
tion of the double-stranded DNA. The new double-stranded DNA, referred to as an ampli-
con, is again separated, annealed with new primers, and extended with nucleotides in the
presence of the polymerase enzyme. Each PCR step is carried out at a different temperature,
which is automatically controlled by an instrument known as a thermocyder. The cycling is
continued for up to 40 cycles, during which the original DNA sequences are increased or
amplified a billionfold and, thus, many copies are available for detection. Probes labeled with
reporter molecules that provide a chemiluminescent or EIA-type colored signal are popular
methods for amplicon detection. Figure 19.6 illustrates the steps in the PCR reaction.

Other nucleic acid amplification assays have been developed for the rapid detec-
tion of microorganisms in clinical specimens, but their principle is similar to that of PCR. An
amplification assay for detecting any infectious agent can be developed as long as the appro-
priate primer sequence is available to begin the amplification reaction. Because these assays
are so sensitive, great care must be taken in the laboratory to avoid contaminating clinical sam-
ples with extraneous DNA that could be amplified and result in false-positive reactions.

The use of antigen detection, probe, and amplification assays in the clinical mi-
crobiology laboratory are discussed further in Sections VIII, X, and XI.

138

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Figure 19.6 Three cycles of a PCR reaction: after 40 cycles, the DNA sequences are amplified a billionfold. (Modified from l m

Prescott et al. Microbiology, 4th ed., WCB/McGraw Hill).

3' rn5'

5'- -3'

Targeted
sequence

CYCLE 1

Steps
1 and 2

Step 3

CYCLE 2

Steps
1 and 2

Step 3

CYCLE 3

Steps
1 and 2

I |

Step
3

Primers

t
I

D ID ID

Principles of Antigen Detection and Nucleic Acid Assays for Detection and Identification of Microorganisms

139

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

7. Principles of Diagnostic
Biology

Questions

1. What are the two major types of nonculture technology used in many clinical microbiology laboratories?

2. List three advantages of nonculture methods over culture procedures for establishing a laboratory diagnosis of an infectious
disease.

3. Name three types of immunoassays.

4. How does a direct immunoassay assay differ from an indirect assay:

5. What is a "reporter" or "marker" molecule?

6. Name two major types of nucleic acid detection methods.

7. Why are nucleic acid amplification assays more sensitive than nucleic acid probe assays?

8. What are the three steps in a PCR assay? What is the temperature of incubation for each step?

9. What important property of Taq polymerase has allowed its use in the PCR reaction?

10. Briefly define primer, amplicon, and thermal cycler.

140

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Section

Microbiology of the
Respiratory Tract

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Name

Class

Date

Exercise

Staphylococci

Staphylococci are ubiquitous in our environment and in the normal flora of our bodies. They are
particularly numerous on skin and in the upper respiratory tract, including the anterior nares and
pharyngeal surfaces. Some are also associated with human infectious diseases.

Staphylococci are gram-positive cocci, characteristically arranged in irregular clusters
like grapes (see colorplate 1). They are hardy, facultatively anaerobic organisms that grow well on
most nutrient media. There are three principal clinically important species: Staphylococcus epider-
midis, Staphylococcus saprophytics, and Staphylococcus aureus. S. epidermidis, as its name implies, is the
most frequent inhabitant of human surface tissues, including skin and mucous membranes. It is not
usually pathogenic, but it may cause serious infections if it has an unusual opportunity to enter past
surface barriers, for example, in cardiac surgery patients or those with indwelling intravenous
catheters. S. saprophyticus has been implicated in acute urinary tract infections in young women ap-
proximately 16 to 25 years of age. It has not been found among the normal flora and is not yet
known to cause other types of infection. It is included in this exercise for completeness. Like S.
epidermidis, S. aureus is often found among the normal flora of healthy persons, but in contrast, most
staphylococcal disease is caused by strains of this species.

S. aureus strains produce a number of toxins and enzymes that can exert harmful effects
on the cells of the infected host. Their hemolysins can destroy red blood cells. The enzyme coagulase
coagulates plasma, but its exact role in staphylococcal infection is not yet known. Leukocidin is a
staphylococcal toxin that destroys leukocytes. Hyaluronidase is an enzyme that acts on a substrate
that is a structural component of connective tissue. Its activity in a local area of infection breaks
down the tissue and permits the staphylococci to penetrate more deeply; hence, it is called "spread-
ing factor." (Some streptococci also produce hyaluronidase.) Staphylokinase can dissolve fibrin clots,
thus enhancing the invasiveness of organisms that would otherwise be walled off by the body's fib-
rinous reactions. An enterotoxin is elaborated by some strains of S. aureus. If these are multiplying in
contaminated food, the enterotoxin they produce can be responsible for severe gastroenteritis or
staphylococcal food poisoning. Some strains produce toxic shock syndrome (TSS) by elaborating
a toxin referred to asTSST-1. This disease is seen primarily in menstruating women who use highly
absorbent tampons. S. aureus colonizing the vaginal tract multiplies there and releases TSST-1, caus-
ing a variety of symptoms including shock and a rash. TSS has also been documented in children,
men, and nonmenstruating women who have a focus of infection at nongenital sites. Strains of S.
epidermidis and S. saprophyticus do not produce these toxic substances.

Common skin infections caused by S. aureus include pimples, furuncles (boils), carbun-
cles, and impetigo. Serious systemic (deep tissue) infections that result from S. aureus invasion in-
clude pneumonia, pyelonephritis, osteomyelitis, meningitis, and endocarditis. In addition to pneu-
monia, S. aureus may also produce infections of the sinuses (sinusitis) and middle ear (otitis media).

EXPERIMENT 20.1 Isolation and Identification of Staphylococci

The laboratory diagnosis of staphylococcal disease is made by identifying the organism (usually S. aureus) in a clinical specimen
representing the site of infection (pus from a skin lesion, sputum when pneumonia is suspected, urine, spinal fluid, or blood). It
should be remembered that either S. aureus or S. epidermidis may be harmlessly present on superficial tissues. Special care must be
taken not to contaminate the specimen with normal flora, and laboratory results must be interpreted in the light of the patient's

142

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Figure 20.1 A rapid latex agglutination test for identifying Staphylococcus aureus. The top left and center wells are the positive

and negative controls, respectively. The top right well is the positive reaction of the patient's isolate.

clinical symptoms. The principal features by which staphylococci are recognized and distinguished in the laboratory include their
microscopic morphology, colonial appearance on blood agar (especially hemolytic activity), coagulase activity (see colorplate 26),
reaction to the carbohydrate mannitol, and susceptibility to the antimicrobial agent novobiocin (see colorplate 27). Also, a rapid
latex agglutination test is available for identifying S. aureus from characteristic colonies growing on agar media. The antibody-
coated latex beads react with two surface proteins typically found on S. aureus strains. One is a type of coagulase bound to the
staphylococcal surface, and the other is a surface protein known as protein A (see fig. 20.1). The species are indistinguishable mi-
croscopically. On blood agar, S. aureus usually displays a light to golden yellow pigment (hence, its name), whereas S. epidermidis
has a white pigment and S. saprophyticus either a bright yellow or white pigment. However, pigmentation is not always a reliable
characteristic. On blood agar, S. aureus is usually, but not always, beta-hemolytic; S. epidermidis and S. saprophyticus are almost al-
ways nonhemolytic. S. aureus is, by definition, coagulase positive; S. epidermidis and S. saprophyticus are coagulase negative. Other
Staphylococcus species that are found on skin but seldom cause disease are also coagulase negative. As a group, these species, along
with S. epidermidis and S. saprophyticus are referred to as coagulase-negative staphylococci. S. aureus is further distinguished by its abil-
ity to ferment mannitol, and S. saprophyticus by its resistance to low concentrations of novobiocin (see colorplate 27).

Since specimens from the mucous membranes or skin may contain a mixed normal flora as well as the pathogenic
staphylococci being sought, the use of a selective, differential medium in the primary isolation battery can be very helpful (see
table 16.1). Mannitol salt agar is such a medium. It contains a high concentration of salt that inhibits gram-positive cocci other
than staphylococci and many other organisms as well. It also contains mannitol and an indicator to differentiate S. aureus strains
from coagulase-negative staphylococci growing on it. A blood agar plate is also essential for demonstrating hemolytic organisms.
Since some streptococci, as well as many strains of S. aureus, are beta-hemolytic, they can be distinguished promptly. Aside from
microscopic morphology, the simplest, most rapid distinction can be made with the catalase test, for all streptococci are catalase
negative, whereas all staphylococci are catalase positive.

Staphylococcus aureus is carried by a large segment of the population as a member of the normal flora. It causes disease
primarily in individuals with lowered resistance, particularly patients in hospitals. In the hospital, S. aureus is a major cause of noso-
comial infections transmitted from hospital personnel or the environment. The problem is compounded by the fact that many
"hospital" strains of staphylococci are resistant to the useful antimicrobial agents. All personnel involved in patient care should be
knowledgeable of transmission routes and carefully follow strict procedures designed to prevent nosocomial infection. In the ex-
periments that follow, you will be seeing and handling staphylococcal cultures. Use your knowledge of aseptic technique and
make certain that you do not carry staphylococci out of the laboratory as new additions to the flora of your hands or clothes.
Keep your hands scrupulously clean. If you have any minor cuts or scratches or other injury to your hands, they should be pro-
tected. While in the laboratory, keep your hands and implements with which you are working away from your mouth and face.

Staphylococci

143

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Purpose

To isolate and identify staphylococci

Materials

Blood agar plate (BAP)

Mannitol salt agar plate (MSA)

Tubed plasma (0.5-ml aliquots)

Novobiocin disks (5 |xg)

Sterile 1.0-ml pipettes

Pipette bulb or other aspiration device

Latex agglutination kit for Staphylococcus aureus

24-hour broth cultures of Staphylococcus epidermidis, Staphylococcus aureus, Staphylococcus
saprophyticus, and Escherichia coli

Procedures

1. With your marking pencil, divide the bottom of a BAP and an MSA plate into four segments each.

2. Using the grown broth cultures, inoculate one section of each plate with S. aureus, one with S. epidermidis, one with S.
saprophyticus, and one with E. coli. Streak each section carefully, remaining within the assigned space.

3. With heated and cooled forceps, pick up a novobiocin disk, place it in the center of one of the streaked areas of the BAP,
and press it gently onto the agar with the forcep tips.

4. Repeat step 3 for the remaining three organisms on the streaked BAP.

5. Place the plates in the 35°C incubator for 24 hours.

6. Perform a coagulase test on each of the three Staphylococcus broth cultures as follows:

a. Using a sterile pipette, measure 0.1 ml of the S. epidermidis broth culture with the aspiration device. Transfer this
inoculum to a tube of plasma. Discard the pipette in disinfectant. Label the tube.

b. Inoculate a second and third tube of plasma with 0.1 ml of the S. aureus and S. saprophyticus broth cultures, respectively,
as in step 6a.

c. Place all inoculated plasma tubes in the 35°C incubator. After 30 minutes, remove and examine them (close the
incubator door while you read them). Hold the tubes in a semihorizontal position to see whether the plasma in the
tube is beginning to clot into a solid mass. If so, make a record of the tube showing coagulase activity. Return
unclotted tubes to the incubator.

d. Repeat procedure 6c every 30 minutes for 4 hours, if necessary.

7. After 24 hours of incubation of the plate cultures prepared in procedures 1 and 2, examine and record colonial
morphology. Make Gram stains of each culture on the BAP and record microscopic morphology. Measure and record the
diameter of the zone of inhibition around the novobiocin disks. A zone size greater than 12 mm in diameter is considered
susceptible.

8. Following the instructor's directions, place one drop of the latex agglutination reagent onto each of two circles on the card
provided. With the special stick contained in the kit or a sterile inoculating loop, pick up several colonies of S. aureus from
the blood agar plate you inoculated at the previous laboratory session. Emulsify the colonies in the latex reagent, being
careful not to scratch the card. Repeat this procedure with colonies of S. epidermidis. Do not use colonies from the mannitol agar
plate as these are difficult to emulsify.

9. Rotate the card gently for 20 seconds, observing the circles for a clearly visible clumping of the latex particles and a
clearing of the milky background (see fig. 20.1). This reaction signifies a positive test. Record the results in the chart, then
dispose of the reaction card in the disinfectant provided.

144

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Results

1. Table of plate culture results

Name of
Organism

Colonial

Morphology

on BAP

Microscopic

Morphology

(BAP)

Appearance
on MSA

Microscopic

Morphology

(MSA)

Novobiocin

Zone
Diameter

S. epidermidis

S. aureus

S. saprophyticus

E. coli

2. Results of identification tests.

Name of
Organism

Coagulase
(+ or -)

Time

Required

to Clot

Plasma

Appearance of

Plasma After

4hr.

Mannitol*
(+ or -)

Novobiocin *
(S or R)

Latex

Agglutination

(+ or -)

S. epidermidis

S. aureus

S. saprophyticus

Your interpretation of results from MSA and novobiocin plates

EXPERIMENT 20.2 Staphylococci in the Normal Flora

Purpose

To isolate and identify staphylococci in cultures of the nose and hands

Materials

Blood agar plates (BAP)

Mannitol salt agar plates (MSA)

Sterile swabs

Dropping bottle containing hydrogen peroxide

Tubed plasma (0.5-ml aliquots)

Latex agglutination kit for Staphylococcus aureus

Procedures

1. Take a culture of your own nose by swabbing the membrane of one of your anterior nares with a sterile swab.

2. Inoculate the nasal swab across the top quarter of a blood agar and a mannitol salt agar plate. Streak across the remainder of
each plate for isolation of colonies. Discard the swab in disinfectant.

3. Take a culture from the palm of your left hand by swabbing across it. Inoculate a blood agar and a mannitol salt agar plate
and streak for isolation of colonies.

4. Sterilize your inoculating loop and moisten it in sterile saline. Run the moistened loop under one of your fingernails,
picking up some debris if possible. Inoculate a blood agar and a mannitol salt agar plate and streak out.

5. Incubate all plates at 35 °C for 24 hours.

Staphylococci

145

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Examine the plates and make Gram stains of different colony types on both the blood and mannitol plates. Perform a
catalase test on the different colony types on both blood and mannitol plates by smearing a small amount of colony growth
onto a slide and with a capillary pipette, placing one drop of hydrogen peroxide onto each smear. Be careful not to dig into
the blood agar medium or a false-positive result may be obtained. Observe for bubble formation (refer to fig. 18.1). Perform a
coagulase test on a colony of mannitol-positive staphylococci, if present, using your loop to pick it from an MSA plate and
emulsify it directly in 0.5 ml of plasma (continue as in Experiment 20.1, steps 6c and d). Perform a rapid latex
agglutination test on any beta-hemolytic colonies that show gram-positive cocci in clusters on Gram stain.
Record your observations in the following table.

Results

Colony
Morphology
on Blood
Agar Plate

Microscopic

Morphology

(BAP)

Catalase

(+ or -)

(BAP)

Latex
Agglutination

(+ or -)

(Beta -h em o lytic

on BAP)

Appearance

on Mannitol

Salt Agar

Microscopic

Morphology

(MSA)

Catalase

(+ or -)

(MSA)

Coagulase
(+ or -)
(Man +)

Tentative*
Identification

n the last column, indicate the tentative identification you would make of each colony described in the table.

Questions

1. Differentiate the microscopic morphology of staphylococci and streptococci as seen by Gram stain

2. What is coagulase?

3. What is protein A?

146

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

4. What properties of S. aureus distinguish it from S. epidermidis and S. saprophyticus':

5. How is S. saprophyticus distinguished from S. epidermidis':

6. From what specimen type would S. saprophyticus most likely be isolated?

7. What is a nosocomial infection? Who acquires it? Why?

8. Why are staphylococcal infections frequent among hospital patients?

9. Discuss the role played by S. aureus in human infectious diseases.

Staphylococci

147

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Name

Class

Date

Exercise

Streptococci, Pneum
and Enterococci

The mucous membranes of the upper respiratory tract that are exposed to air and food (nose,
throat, mouth) normally display a variety of aerobic and anaerobic bacterial species: gram-positive
cocci (Streptococcus, Staphylococcus, and Pepto streptococcus species); gram-negative cocci (Neisseria,
Moraxella, and Veillonella species); gram-positive bacilli (Corynebacterium, Propionibacterium, and
Lactobacillus species); gram-negative bacilli (Haemophilus, Prevotella, and Bacteroides species); and,
sometimes, yeasts (Candida species).

This flora varies somewhat in various areas of the upper respiratory tract. The nasal
membranes show a predominance of staphylococci. The throat (pharyngeal membranes) has the
richest variety of microbial species, and the sinus membranes have few if any organisms. The deeper
reaches of the respiratory tract (trachea, bronchi, alveoli) are not readily colonized by microorgan-
isms, because the ciliated epithelium of the upper membranes together with mucous secretions trap
and move them upward and outward.

Usually the normal flora present in the upper respiratory tract prevents entry and over-
growth of transient microorganisms at those sites. Some of these intruders might be pathogenic and
capable of invading respiratory lining cells or deeper tissues. If the conditions maintained by com-
mensal organisms are disturbed (by changes in the immune status of the host, by administration of
antimicrobial agents to which the commensals are susceptible, or by unusual exposure to virulent,
transient pathogens in large numbers), other microorganisms may then be able to colonize and in-
vade the membranes.

EXPERIMENT 21 .1 Isolation and Identification of Streptococci

The genus Streptococcus contains gram-positive cocci that characteristically are arranged in chains (see colorplate 2). A number of
species of streptococci are normally found among the normal flora of human skin and mucous membranes, particularly those of
the upper respiratory tract. Certain species are more commonly associated with human infectious diseases than others.

Many streptococci have fastidious growth requirements including a requirement for blood-enriched media. Most grow
well in air but also grow in the absence of oxygen (i.e., they are facultative anaerobes), some prefer reduced oxygen tension and in-
creased C0 2 (micro aerophilic) , and some grow only in the absence of oxygen (anaerobic). The anaerobic streptococci are now placed
in the genus Peptostreptococcus (see Exercise 28). An incubation temperature of 35°C is optimal for growth of most streptococci.

A number of streptococcal species produce substances that destroy red blood cells; that is, they cause lysis of the red cell
wall with subsequent release of hemoglobin. Such substances are referred to as hemolysins. The activity of streptococcal hemolysins
(also known as streptolysins) can be readily observed when the organisms are growing on a blood agar plate (see colorplate 11).

Different streptococci produce different effects on the red blood cells in blood agar. Those that produce incomplete he-
molysis and only partial destruction of the cells around colonies are called alpha-hemoly tic streptococci. Characteristically, this type
of hemolysis is seen as a distinct greening of the agar in the hemolytic zone, and thus this group of streptococci has also been re-
ferred to as the viridans group (from the Latin word for green) .

Species whose hemolysins cause complete destruction of red cells in the agar zones surrounding their colonies are said
to be beta-hemolytic. When growing on blood agar, beta-hemolytic streptococci are small opaque or semitranslucent colonies sur-
rounded by clear zones in an otherwise red opaque medium. One of the two streptococcal hemolysins involved in this reaction
is inhibited by oxygen. Its effect is seen best around subsurface colonies or when culture plates are incubated anaerobically Some
strains of staphylococci, Escherichia coli, and other bacteria also may show beta-hemolysis.

Some species of streptococci do not produce hemolysins. Therefore, when their colonies grow on blood agar, no
change is seen in the red blood cells around them. These species are referred to as nonhemolytic streptococci, although formerly,

Staphylococci, Pneumococci, and Enterococci

149

Morello-Mizer-Granato:

I. Diagnostic 8. Microbiology of the

Laboratory Manual and Microbiology in Action Respiratory Tract Companies, 2003

Workbook in Microbiology,
7/e

they were called gamma streptococci. Colorplate 28 shows the appearance of alpha-, beta-, and nonhemolytic streptococci grow-
ing as subsurface colonies.

In the clinical microbiology laboratory, observation of hemolysis is an important first step in differentiating among
streptococcal species. Alpha-hemolytic streptococci are members of the normal throat flora and do not need to be identified
further when they are isolated from respiratory cultures. In persons with heart valve abnormalities, however, these streptococci
may be deposited on the valves, usually at the time of dental work when they have the opportunity to enter and circulate through
the bloodstream. The inflammatory process that develops on the valve is referred to as endocarditis and, if untreated, is a life-
threatening infection. In patients with endocarditis, isolation of viridans streptococci from multiple blood cultures is considered
diagnostic of endocarditis.

When beta-hemolytic streptococci are found in throat cultures, the laboratory must proceed with further testing to
determine the antigenic group. This is done by extracting the carbohydrate antigen from the streptococcal cell wall and reacting
it with specific antibodies in a latex agglutination test or enzyme immunoassay (see Exercise 19). The most important strepto-
coccal group is group A, which is responsible for streptococcal pharyngitis ("strep throat") and a variety of other serious skin and
deep tissue infections (see table 21.1). The species name given to group A streptococci is pyogenes (pus producing, a characteris-
tic of the infection produced). Certain toxins and extracellular products of S. pyogenes are responsible for scarlet fever, rheumatic
fever, and a toxic shock syndrome similar to that produced by Staphylococcus aureus.

At one time, group B streptococci (Streptococcus agalactiae) were considered primarily animal pathogens. Now, they are
known to colonize the human female vaginal tract. In some colonized pregnant women, the organism causes infection of the en-
dometrium following delivery, and more seriously, may produce sepsis and meningitis in their newborn child. Because of these
severe infections, pregnant women are routinely screened for vaginal carriage of the group B Streptococcus a few weeks before term,
and treated with antimicrobial agents if they are colonized.

Other beta-hemolytic streptococci are placed in groups C through V, but most do not cause disease. Groups C, F, and
G may cause mild pharyngitis but do not have the serious effects that groups A and B do.

Streptococcal-like bacteria with group D antigen were at first classified in the genus Streptococcus, but studies have re-
vealed that they differ in many biological respects. Therefore, they have now been placed in their own genus, Enterococcus.

Identification of Streptococci

In smears from patient material, the microbiologist presumptively identifies gram-positive cocci in chains as streptococci (although
the Gram-stain reaction and morphology only are reported to the physician) . When culture growth is available, the type of he-
molysis produced by colonies on blood agar plates leads to the next step(s) in identification. Alpha-hemolytic colonies from res-
piratory specimens are not identified further because they are considered normal flora. Beta-hemolytic colonies must be identi-
fied to determine whether or not they are group A (any specimen type) or group B (genital specimens from pregnant women).

Although serological testing (most commonly by the latex agglutination method, fig. 19.2) is the definitive method for
grouping beta-hemolytic streptococci, rapid methods for grouping have become available only recently and they are expensive.
Therefore, alternative, presumptive tests are commonly used in the laboratory for identifying groups A and B streptococci. For ex-
ample, group A streptococci, but not other beta-hemolytic streptococci, are susceptible to low concentrations of the drug baci-
tracin. By using a bacitracin disk-diffusion assay such as you performed in Experiment 15.1, the susceptibility of suspected strains
can be tested (see colorplate 29). Group B streptococci produce a substance called the CAMP factor (see Experiment 21.2 and
colorplate 30) that enhances the effect of beta-hemolysins possessed by some strains of Staphylococcus aureus. All other groups of
beta-hemolytic streptococci must be identified serologically, but in practice, determining the absence of group A and B strains is
usually sufficient for clinical purposes.

In addition to using a rapid latex agglutination test for identifying group A streptococci (fig. 21.1), a rapid enzyme im-
munoassay test (see figs. 21.2 and 19.4) is available to detect the group A antigen directly from a throat swab, without first grow-
ing the organism in culture. This type of test is usually performed in clinics and in physicians' offices because it is rapid (10 to 30
minutes) and does not require culture expertise. However, for a positive test, a large number of organisms is needed on the swab.
When negative results are obtained for patients with clinical evidence of pharyngitis, a throat swab for "strep" culture should al-
ways be sent to the clinical microbiology laboratory.

150

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Figure 21.1

A positive latex agglutination reaction for group A streptococci. The left-hand well shows a very fine, granular
precipitate. In this well, the group A carbohydrate antigen has combined with latex beads coated with antibody
against this specific antigen. The well on the right (group B antigen) remains negative, showing only the milky
suspension of nonagglutinated latex particles. This antigen does not react with the anti-group A antibodies on the
latex particles.

Figure 21.2

Diagram of a streptococcal enzyme immunoassay (El A), (a) A throat swab from a patient with streptococcal
pharyngitis is placed in a tube with extraction solution, which extracts the group A antigen, (b) The extraction solution
is then passed through a filter where the group A antigen attaches to its surface, (c) After a wash step, an antibody
against the group A Streptococcus, which is linked to an enzyme, is added to the filter where it attaches to the group
A antigen, (d) After another wash, a colorless substrate specific for the enzyme is added and is split to a colored end
product when it comes in contact with the antibody-bound enzyme, (e) If an antigen other than group A was present,
no antibody would bind. Unbound antibody would be washed away, and no color reaction would be seen.

Th roat
swab

Antibody

Anti-group A

antibody

conjugated

with

enzyme

(a)

Cb)

(c)

O Substrate

Substrate
reacted

with
enzyme

(d)

(e)

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Table 21.1 summarizes the characteristics of streptococci and enterococci. In Experiment 21.1, we shall study some
simple methods for isolating streptococci from clinical specimens and for presumptive and confirmatory identification of Deta-
il emolytic strains as group A. In Experiment 21.2, procedures for differentiating group B strains by the CAMP and serological
tests will be followed.

Purpose

To isolate and identify streptococci in culture

Materials

Sheep blood agar plate

Simulated throat culture from a 2-year-old child with acute tonsillitis

Demonstration blood agar plate showing alpha-hemolytic, beta-hemolytic, and nonhemolytic
strains of streptococci

Demonstration plate showing response of two strains of beta-hemolytic streptococci to bacitracin
disks (A disks)

Solution with extracted antigen of beta-hemolytic Streptococcus (prepared by instructor)

Latex test kit for serological typing

Procedures

1 . Inoculate and streak a blood agar plate with the simulated clinical specimen. Make a few stabs in the agar at the area of
heaviest inoculum. Try not to stab to the bottom of the agar medium layer.

2. Incubate the plate at 35°C for 24 hours.

3. Examine the demonstration plates (but do not open them without supervision).

4. Following the manufacturer's directions, use the typing kit to identify serologically the beta-hemolytic isolate. Mix the
antigen extract with a drop of each of the group A and group B latex reagents.

5. Observe both suspensions for evidence of agglutination.

6. Record your observations under Results (no. 7) (fig. 21.1).

Results

1. Describe the "patient's" throat culture results in the following table, after making Gram stains

Morphology of
Individual Colonies

Type of Hemolysis
Displayed

Gram-Stain
Reaction

Microscopic
Morphology

2. Describe any differences in intensity of hemolysis around colonies growing on the agar surface and those pushed below
the surface where you stabbed into the agar.

3. How would you report the culture results to the physician?

4. Demonstration plate showing different types of hemolysis: describe your observations of

Alpha-hemolytic streptococci

152

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

o
o
o
o
o

■a

■ ^^

o
o

o
u
o
o
o

55
o

Clinical Diseases

Pharyngitis-tonsillitis
Skin infections
Scarlet fever
Postpartum endometritis
Rheumatic fever
Toxic shock
Glomerulonephritis

Neonatal sepsis and meningitis
Postpartum endometritis

Pharyngitis

Endocarditis
Urinary tract infection
Wound infection

Endocarditis

Pneumonia
Bacteremia
Meningitis
Endocarditis

Identification

Susceptible to bacitracin (A disk)
Serological typing

Positive CAMP test
Serological typing

Serological typing

Growth in 6.5% salt broth
Growth and blackening on bile-

esculin medium
Positive PYR reaction
Serological typing

Hemolytic reaction

Bile insoluble

Resistant to optochin (P disk)

Biochemicals if necessary

Susceptible to optochin (P disk)

Bile soluble

Serological (capsular) typing

Cellular Products

Group A carbohydrate

Streptolysins

Scarlet fever (pyrogenic) toxin

Deoxy ri bon uclease

Toxic shock toxin

Group B carbohydrate

Group C carbohydrate

Group D carbohydrate

Capsular carbohydrate

Type of Hemolysis

Beta

Alpha, beta, or nonhemolytic

Alpha

Organism Name

S. pyogenes

S. agalactiae

S. equisimilis

Enterococcus spp.

Viridans streptococci

S. pneumoniae

Serological
Group*

Not grouped

Types 1-80+

Experiment
No.

21.1

21.2

21.4

21.3

CD
O

-•— »

_(D

"O
>^

-Q

05
O

O
O)

o
o
o

CD
Q_

-•— »
CD

O
O
O
O

CD
Q_

CD
O

CD
>^

-Q

05
O

"o
o
o
o
o

-I—'

-•— »
CO

"CD

Q-
O

'(f)

53
o

Staphylococci, Pneumococci, and Enterococci

153

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Beta-hemolytic streptococci

Nonhemolytic streptococci

5. Demonstration plate with A- disks: diagram your observations, indicating the position of the disks, areas of growth, and
type of hemolysis.

6. State your interpretation of the bacitracin disk results.

7. With which latex reagent did you obtain a positive result? Group

EXPERIMENT 21.2 The CAMP Test for Group B Streptococci

Group B streptococci can be distinguished from other beta-hemolytic streptococci by their production of a substance called the
CAMP factor. This term is an acronym for the names of the investigators who first described the factor: Christie, Atkins, and
Munch- Peters en. The substance is a peptide that acts together with the beta-hemolysin produced by some strains of Staphylococcus
aureus, enhancing the effect of the latter on a sheep blood agar plate. This effect is sometimes referred to as synergistic hemolysis
(see colorplate 30).

Purpose

Materials

To differentiate group B from group A streptococci by the effect of the group B CAMP factor and
by a serological method

Demonstration sheep blood agar plate, streaked at separate points with Staphylococcus aureus, group B

streptococci, and group A streptococci
Solution with extracted antigen of beta-hemolytic Streptococcus (prepared by instructor)
Latex test kit for serological typing

154

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Procedures (Steps 1-4 to be followed by instructor)

1. With an inoculating loop, streak a strain of S. aureus down the center of a blood agar plate. (ATCC 25923 or other strain
known to produce beta-hemolysin is used; 5% sheep blood agar is needed.)

2. On one side of the plate, inoculate a strain of group B Streptococcus by making a streak at a 90° angle, starting 5 mm away
from the S. aureus and extending outward to the edge of the agar (see diagram) .

3. On the other side of the plate, inoculate a strain of group A Streptococcus, again at a 90° angle from the S. aureus, as in step
2. This streak should not be directly opposite the group B inoculum (see diagram).

4. Incubate the plate aerobically at 35°C for 18 to 24 hours.

5. The student should confirm the isolates identity by the serological test. Using the extracted antigen solution, follow the
procedures in steps 4 and 5 of Experiment 21.1.

Results

1. Observe the area of hemolysis surrounding the S. aureus streak. At the point adjacent to the streak of group B streptococci,
you should see an arrowhead-shaped area of increased hemolysis indicating production of the CAMP factor (review
colorplate 30). There should be no change in the hemolytic zone adjacent to the streak of group A streptococci, most
strains of which do not produce the CAMP factor.

Group B streptococci,
with arrowhead zone
of increased hemolysis
(CAMP test +)

S, aureus streak

Group A streptococci
(CAMP test -)

Although most group A streptococci give a negative CAMP test, some have been reported to be positive, especially when
the test plate has been incubated anaerobically rather than aerobically. The bacitracin disk test may be useful in
distinguishing the latter from group B streptococci. Conversely, however, occasional strains of group B streptococci may be
bacitracin susceptible. In such cases, a serological grouping method may be required for final identification. The following
scheme may be followed by diagnostic laboratories reporting the results of these tests.

CAMP factor +

Bacitracin —

CAMP factor -

Bacitracin

CAMP factor +

CAMP factor -

Bacitracin

Presumptive group B streptococci

Presumptive group A streptococci

May be either group A or B; differentiate serologically

Not group A or group B streptococci (presumptive)

3. With which latex reagent did you obtain a positive result? Group

Staphylococci, Pneumococci, and Enterococci

155

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

EXPERIMENT 21.3

Identification of Pneumococci

Pneumococci are among the most important agents of bacterial pneumonia. Other microorganisms such as staphylococci
(Exercise 20), Haemophilus influenzae (Experiment 22.1), and Klebsiella pneumoniae (Exercise 24) may also be associated with seri-
ous pulmonary disease. Bacterial agents of pneumonia cause an acute inflammation of the bronchial and/or alveolar membranes.
When the alveoli are involved, their thin membranes may be disrupted by hemorrhage of alveolar capillaries and collections of
inflammatory exudate (pus) containing many white blood cells. Laboratory diagnosis is often made by isolating the causative agent
from sputum sent for culture. However, because sputum specimens pass through the oropharynx as they are expectorated, con-
taminating members of the normal throat flora may interfere with culture results by overgrowing the pathogen. The causative or-
ganism is often found in the bloodstream during early stages of infection, and therefore, patient blood should also be cultured. In
some patients, the organisms spread from the bloodstream to the central nervous system to cause meningitis. Pneumococci can
then be isolated from the patient's cerebrospinal fluid as well.

Pneumococci are classified in the genus Streptococcus as the species pneumoniae. They are gram-positive, lancet-shaped
cocci that characteristically appear in pairs (diplococci) or in short chains (see colorplate 3). Like other streptococci, they are fas-
tidious microorganisms and require blood-enriched media and microaerophilic conditions for primary isolation. They are alpha-
hemolytic and usually produce greening of blood agar around their colonies. Streptococcus pneumoniae can be distinguished from
other alpha-hemolytic streptococci because it is lysed by bile salts and other surface active substances, including one known as
optochin (see colorplate 31).

Another distinctive feature of pneumococci is that they possess a capsule, composed of a viscous polysaccharide. This
slimy capsule protects them from destruction by phagocytes that gather at sites of infection throughout the body to ingest them.
In the laboratory, the pneumococcal capsules are not readily demonstrated by usual staining techniques, but they can be made
visible under the microscope by a serological technique known as the "quellung" reaction. Quellung is the German word for
"swelling" and describes the microscopic appearance of pneumococcal or other bacterial capsules after their polysaccharide anti-
gen has combined with a specific antibody present in a test serum from an immunized animal. As a result of this combination,
and precipitation of the large, complex molecule formed, the capsule appears to swell, because of increased surface tension, and
its outlines become clearly demarcated (see colorplate 10).

The capsular antigen can also be detected with antibody-coated latex reagents. Colonies of suspected pneumococci
growing on blood agar plates may be tested, or, depending on the disease severity, the soluble capsular antigen may be present in
the patient's CSF, blood, and urine (the antigen, but not necessarily the organisms, is excreted from the body by the kidneys).
Regardless of the results of direct antigen detection tests, cultures of sputum, blood, and cerebrospinal fluid (in patients with signs
and symptoms of meningitis) should always be performed. In some instances, the antigen concentration in body fluids is too low
to be detected, but cultures are positive.

Pneumococci are frequently found among the normal flora of the upper respiratory tract of healthy individuals. Their
recovery in sputum cultures is not, of itself, conclusive evidence of pneumococcal disease. This finding must be correlated with
the total picture of the patient's clinical illness.

Purpose

To identify pneumococci in culture

Materials

Dropping bottle containing 10% sodium desoxycholate or sodium taurocholate (bile solution)

Tubes containing 1 ml nutrient broth

Optochin disks

Forceps

Blood agar plate

Candle jar

Blood agar plate cultures of pneumococci and other alpha-hemolytic streptococci

156

Diagnostic Microbiology in Action

Morello-Mizer-Granato:

I. Diagnostic 8. Microbiology of the

Laboratory Manual and Microbiology in Action Respiratory Tract Companies, 2003

Workbook in Microbiology,
7/e

Procedures

1. Examine the blood agar plate cultures of pneumococci and of alpha-hemo lytic streptococci and note any differences in
colonial morphology Make a Gram stain of each organism.

2. Make a light but visibly turbid suspension of pneumococci in each of two tubes of nutrient broth. Repeat, making two
suspensions of the other alpha-hemo lytic streptococci in nutrient broth.

3. To one tube of each suspended organism add a few drops of the 10% bile solution. Over a 15-minute period, observe all
tubes for evidence of clearing of the suspension (lysis of the organisms) and record results for each tube.

4. Mark a blood agar plate with your marking pencil to divide it in half. Streak one side heavily with a loopful of
pneumococci, the other side equally with alpha-hemo lytic streptococci.

5. Flame or heat your forceps lightly and use them to take up an optochin disk. Place the disk in the center of the area on the
blood plate you streaked with pneumococci. Reheat the forceps and place another disk in the middle of the section
streaked with alpha-hemolytic streptococci. Press each disk down lightly on the agar with the tip of the forceps, to make
certain it is in contact and will not fall off when the plate is inverted (do not press it through the agar). Reheat the forceps.

Note: Optochin is the commercial name for ethylhydrocupreine hydrochloride, a surface reactant impregnated in the disk.
Its effect on pneumococcal cell surfaces is similar to that of bile. The disk is often called a "P-disk" because it is used to
distinguish susceptible pneumococci from other streptococci that are not lysed by surface reactants.

6. Invert the plate and place it in a candle jar. Light the candle, replace the lid of the jar (tightly), and wait for the candle
flame to burn out. Place the jar in the 35°C incubator for 24 hours. (Any wide-mouthed, screw-cap jar can serve as a
candle jar. The candle burning in the closed jar uses up some of the oxygen and increases the carbon dioxide level. At a
certain point, the oxygen is not sufficient for the candle to continue burning, and the flame will be extinguished. The
atmosphere remaining within the jar contains the increased carbon dioxide tension and the reduced oxygen tension
preferred by many bacterial species, such as pneumococci, when they are first removed from the body and cultured on
artificial medium (fig. 21.3.) In many clinical laboratories, the plates are incubated in a special C0 2 incubator. Gas flowing
into the incubator from a C0 2 cylinder maintains a constant level of 5 to 7% C0 2 .

Results

1. Record your observations of the colonial and microscopic morphology of pneumococci and other alpha-hemolytic
streptococci in the table following step 3 on page 159.

2. Record results of the bile solubility test in the table. Describe here the appearance of each tube at the end of the 15-
minute test.

Pneumococcus suspension with bile

without bile

Alpha-hemolytic Streptococcus suspension with bile

without bile

Staphylococci, Pneumococci, and Enterococci

157

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Figure 21 .3 A closed candle jar containing petri plate cultures. The candle flame has gone out because the remaining oxygen is

not sufficient to keep the flame lit. The jar now contains increased carbon dioxide and decreased oxygen, an
atmosphere (microaerophilic) preferred by many bacteria.

158

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

3. Record results of the optochin disk test in the table. Diagram the appearance of the growth on the plate with the disks,
indicating your interpretation.

Name of
Organism

Colonial

Morphology

(and Hemolysis)

Microscopic
Morphology

Bile
Solubility
(+ or -)

Optochin

Susceptibility

(+ or -)

Streptococcus pneumoniae

Alpha-hemolytic Streptococcus

EXPERIMENT 21.4

Identification of Enterococci

Enterococci are gram-positive cocci that form chains in culture and that, until recently, were classified in the genus Streptococcus.
Because they differ in several characteristics, including the composition of their genetic material, they are now classified in a sep-
arate genus, Enterococcus. As the name implies, enterococci are found primarily in the intestinal tract, although they may be found
in the upper respiratory tracts of infants and young children. Their primary role in disease is as the agents of urinary tract infec-
tion, infective endocarditis (like the viridans group streptococci), and wound infections, especially those contaminated with in-
testinal contents. In the laboratory, their colonies resemble somewhat those of group B streptococci. They must be differentiated
from this organism because their presence at certain body sites has a different meaning. For example, enterococci isolated from a
genital tract specimen of a pregnant woman near term may simply represent contamination from the intestinal tract, whereas iso-
lation of group B streptococci from the same specimen represents a potential hazard for the fetus. Enterococcus faecalis is the most
common species isolated from persons with enterococcal infections, but another species, Enterococcus faecium, is being isolated more
frequently from hospitalized patients with serious infections. This organism is highly resistant to almost all antimicrobial agents
including vancomycin, which has been the only drug available for treating some strains of this species. Enterococcal strains re-
sistant to this agent are referred to as vancomycin-resistant enterococci, orVRE. Patients colonized or infected withVRE are
treated with special precautions in the hospital to prevent transmission of the organism to others. Treatment of infections caused
by VRE is a significant clinical challenge. Although pharmaceutical companies are working to develop new, effective drugs, mi-
crobial resistance to them evolves rapidly. Some strains of other enterococcal species, including E. faecalis, are also resistant to van-
comycin but not yet to the same extent as E. faecium strains are.

Enterococci previously were known as group D streptococci because they possess a characteristic antigen on their cell
wall that reacts in serological tests with group D antibody. Unlike the streptococci, enterococci can grow in a high concentration
salt broth (containing 6.5% sodium chloride), are resistant to bile, and hydrolyze a complex carbohydrate, esculin. The last two
characteristics are used in a selective and differential medium for enterococci, called bile-esculin agar. The bile inhibits strepto-
coccal but not enterococcal growth. When enterococci hydrolyze the esculin, a black pigment forms in the medium. The pig-
ment results from the reaction of the esculin breakdown products with an iron salt that is also included in the medium (see col-
orplate 32). This test often becomes positive within 4 hours so that a rapid identification can be made. An even more rapid test
that is performed with colonies of enterococci growing on a culture plate is the PYR test. This test detects an enzyme, pyrroli-

Staphylococci, Pneumococci, and Enterococci

159

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

donylarylamidase, which is produced by enterococci but not most other gram-positive cocci (an important exception is the group
A beta-hemolytic Streptococcus, which also produces pyrrolidonylarylamidase and is positive in the PYR test). The substrate for
this enzyme is impregnated on disks and its hydrolysis is detected by a simple disk method (see colorplate 33) .

Purpose

To identify enterococci in culture

Materials

6.5% sodium chloride broths

Plate of bile-esculin agar

PYR disks and developer reagent

Blood agar plate cultures of Enterococcus faecalis and a group B Streptococcus

Procedures

1. Examine the blood agar plate culture of the Enterococcus. Do the colonies resemble those of the group B Streptococcus? Make
a Gram stain of the organisms.

2. Inoculate two sodium chloride broths lightly, one each with a portion of a colony from each plate. After you inoculate
them, the broths should not be turbid; otherwise, you will not be able to determine whether the organism grew during
incubation.

3. Incubate the broths for 24 hours at 35°C.

4. Mark the bottom of the bile-esculin plate to divide it in half.

5. Streak the Enterococcus across one-half of the bile-esculin agar plate and the group B Streptococcus across the other half.
Incubate the plate at 35°C and examine it just before you leave the laboratory (don't forget to reincubate) and again after
24 hours.

6. With forceps, remove a filter paper disk impregnated with PYR substrate (L-pyrrolidonyl-beta-naphthylamide) from the
vial of disks. Place the disk on the surface of a glass microscope slide or in an empty petri dish. Moisten the disk with a
small drop of tap or distilled water, taking care not to flood the disk.

7. With your sterilized inoculating loop, pick up several colonies of enterococci and rub them onto the surface of the disk.
Be careful not to dig up any blood agar with your inoculum. Resterilize your inoculating loop.

8. After two minutes, add a drop of the developer reagent to the surface of the disk. A red color develops within one minute
if the test is positive.

9. Repeat steps 6 through 8 with the culture of group B Streptococcus.

10. After 24 hours examine the salt broths for the presence or absence of growth (turbidity). Compare the inoculated,
incubated broths with an uninoculated broth tube.

1 1 . Examine the bile-esculin plate and note the color of the medium in each half.

Results

1. For each organism, record results (+ or — ) of the esculin hydrolysis reaction (black pigment formation) at the end of the
lab session (less than or equal to [^] 4 hours) and at 24 hours.

Enterococcus faecalis :

^4 hours

24 hours

;roup B Streptococcus:

<4 hours

24 hours

160

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

2. Record your observations in the following table.

Colonial
Morphology

Microscopic
Morphology

Bile-Esculin

PYR

Salt Broth

Name of
Organism

Growth
(+ or -)

Black Pigment
(+ or -)

Red color
(+ or -)

Growth
(+ or -)

Enterococcus faecalis

Group B Streptococcus

EXPERIMENT 21.5 Streptococci in the Normal Flora

Purpose

To study the normal flora of the throat

Materials

Sheep blood agar plate

Sterile swab

Sterile tongue depressor

Optional:

Simulated swab from suspected "strep" throat patient

Kit for detection and confirmation of group A streptococcal antigen from a throat swab

Procedures

1. Figure 21.4 diagrams the correct method for collecting a throat culture. Note that the tongue is held down out of the way
and the throat swab is lightly touching the posterior wall of the pharynx.

2. The instructor will demonstrate the method. Observe carefully.

Figure 21.4 Taking a throat culture. The swab should touch only the pharyngeal membranes.

Staphylococci, Pneumococci, and Enterococci

161

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

3. Now take a throat culture from your laboratory partner. The "patient" should be positioned in good light so that you can
see the back of the throat and the position of the swab as you insert it. Gently and quickly swab the posterior membranes of
the throat, being careful not to touch the swab to any other tissues as you insert or remove it.

4. Inoculate a blood agar plate by rolling the swab over a small area near one edge. Streak the plate with the inoculating loop
in a manner to obtain isolated colonies (review fig. 9.1).

5. Discard the swab and tongue depressor in a container of disinfectant.

6. With your sterilized loop, make a few stabs in the agar at the area where the swab was rolled. Do not stab through to the
bottom of the agar layer. Incubate the plate at 35°C for 24 hours.

7. If the group A streptococcal antigen test kit is available, take a second swab from your "patient" (step 3). Test both your
"patient" swab and the simulated swab from the "strep" throat patient following the manufacturer's instructions carefully.

Results

1. If the streptococcal antigen detection test was performed, record the results

Your "patient" (+ or — )

Strep" throat patient (+ or — )

Complete the following if the test you used was an EIA test

Color of the positive test:

Color of the negative test:

2. Examine the incubated culture plate carefully. How many colonies of different types can you distinguish? Describe each
colony type in the following table.

3. Hold the plate against a good light. Do you see any hemolytic colonies? Indicate type of hemolysis shown by each colony
recorded in the table.

4. Make a Gram stain of one colony of each type and record results in the table.

5. Enter your tentative identification of each colony in the table and the additional tests needed to complete the
identification.

6. Did the culture of your "patient's" throat confirm the results of the swab antigen detection test?

Colony
Morphology

Type of Hemolysis

Gram-Stain
Reaction

Tentative
Identification

Further
Tests Needed

Questions

1. Differentiate the microscopic morphology of streptococci and pneumococci as seen by Gram stain

162

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

2. What type of hemolysis is produced by S. pneumoniae}

3. How is S. pneumoniae distinguished from other streptococci with the same hemolytic properties:

4. What is the quellung reaction?

5. What role does a bacterial capsule play in infection?

6. What kind of culture media and atmospheric and incubation conditions are best for cultivating streptococci?

7. Why is blood agar considered a differential medium?

8. What is the function of a candle jar?

9. Describe the hemolysis produced by alpha-hemolytic, beta-hemo lytic, and nonhemolytic streptococci

10. What type of hemolysis is displayed by streptococci that are most pathogenic for human beings:

To what serological group do these usually belong:

How can they be identified as belonging to this group without doing a serological test? Explain

Staphylococci, Pneumococci, and Enterococci

163

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

11. Describe the principle of the latex agglutination test.

12. Name at least three bacterial species found among the normal flora of the throat.

13. Is the normal flora of the upper respiratory tract harmful to the human host? Explain

14. Is the normal flora beneficial to the host? Explain.

15. In collecting a throat culture, why is it important not to touch the swab to other surfaces in the mouth?

16. What specimens are of value in making a laboratory diagnosis of bacterial pneumonia? Why? Explain the difference
between saliva and sputum.

17. Would a direct Gram stain of a sputum specimen be of any immediate value to the physician in choosing treatment for a
patient with pneumonia? Explain.

18. Does antimicrobial therapy have any effect on the body's normal flora? Explain

19. What is the significance of VRE?

164

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Name

Class

Date

Exercise

Haemophilus, Corynebacteria,
and Bordetella

EXPERIMENT 22.1

Haemophilus

The genus Haemophilus contains a number of species of fastidious, gram-negative bacilli. Most of these are found as normal flora
of the upper respiratory tract. Haemophilus species can cause infections in a variety of sites in the upper respiratory tract and else-
where in the body. Laboratory diagnosis is made by identifying these organisms in clinical specimens appropriately representing
the area of infection (throat swab, sinus drainage, sputum, conjunctival swab, spinal fluid, blood, or other). A direct smear of the
specimen may be useful, particularly for spinal fluid or an exudate from the eye, in providing rapid, presumptive information.
(Smears of material from the upper respiratory tract, with its mixed flora, may have little value unless the organisms are present
in large numbers.) Latex antibody tests can also be performed directly with certain patient body fluids to detect Haemophilus anti-
gen (see Exercise 19). Until an effective vaccine came into widespread use in the early 1990s, most serious Haemophilus disease
was caused by H. influenzae serogroup b (H. influenzae strains are divided into serogroups a— f on the basis of their antigenic poly-
saccharide capsule). This organism is seldom isolated in the clinical laboratory today, but other Haemophilus species and H. in-
fluenzae serogroups other than serogroup b are occasionally encountered.

The fastidious Haemophilus organisms require specially enriched culture media and microaerophilic incubation condi-
tions. "Chocolate" agar is commonly used for primary isolation of Haemophilus from clinical specimens. This medium contains
hemoglobin derived from bovine red blood cells as well as other enrichment growth factors. Because the hemoglobin is dark
brown, the agar in the plate has the appearance of chocolate.

Two special growth factors, called X andV, are required by some Haemophilus species. Some require one but not the
other. The X factor is hemin, a heat-stable derivative of hemoglobin (supplied in chocolate agar). The V factor is a heat-labile coen-
zyme (nicotinamide adenine dinucleotide, or NAD), essential in the metabolism of some species that lack it. Yeast extracts con-
tain V factor and are one of the most convenient supplements of chocolate agar or other media used for Haemophilus. Organisms
other than yeasts elaborateV factor. Staphylococci, for example, when growing on an agar plate secrete NAD into the surrounding
medium. Haemophilus species that needV factor may grow in the zone immediately around the staphylococci but not elsewhere
on the plate. This growth of the dependent organism is described as "satellitism" (see colorplate 34). X andV factors can also be
incorporated directly into agar media that do not contain these factors, or alternatively, they can be impregnated in filter-paper
disks that are pressed on the surface of X andV factor— deficient media. In the latter case, the growth factors diffuse into the agar
in a manner similar to diffusion from disks impregnated with antimicrobial agents (see Experiment 15.1).

Purpose

To identify Haemophilus species in culture

Materials

Sheep blood agar plate

Chocolate agar plate

Nutrient agar plate

X andV disks

Forceps

Haemophilus ID Quad Plate

Chocolate agar plate cultures of Haemophilus influenzae and Haemophilus parainfluenzae

Demonstration blood agar and nutrient agar plates showing satellitism

Haemophilus, Corynebacteria, and Bordetella

165

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Procedures

1. Make a Gram stain of each species of Haemophilus.

2. Divide a sheep blood plate and a chocolate agar plate in half with your marking pen or pencil. Label one half H. influenzae
and the other half H. parainfluenzae. Inoculate H. influenzae on the appropriate side of each plate and streak for isolation
within this half. Repeat with H. parainfluenzae on the other half of each plate. Incubate these plates in a candle jar or C0 2
incubator at 35°C for 24 hours.

3. Repeat step 2 using the nutrient agar plate, but inoculate each strain heavily and streak for confluent growth within its half
of the plate. Now, using heated, cooled forceps, place an X and aV disk on the agar surface streaked with H. influenzae and
repeat on the H. parainfluenzae side. The two disks on each side should be placed not more than 1 inch apart, and centered
in the area streaked (see diagram under Results, step 3). Incubate this plate in a candle jar or a C0 2 incubator at 35°C for
24 hours.

4. Lightly streak all four quadrants of one Haemophilus ID Quad Plate with H. influenzae and label the plate with the name of
the organism. Repeat with a second plate using the H. parainfluenzae culture. Incubate these plates in a candle jar or C0 2
incubator at 35°C for 24 hours.

5. Examine the demonstration plates. H. influenzae has been streaked heavily on one-half of each plate, H. parainfluenzae on
the other half. An inoculum of a Staphylococcus culture was made in one area in the center of each streaked portion.
Describe your observations and indicate your interpretation of the appearance of the blood and nutrient agar plates under
Results, step 5.

Results

1. Describe the microscopic morphology of the two Haemophilus species you Gram stained, indicating any distinctions you
observed between them.

2. Complete the following chart, describing the Gram-stain appearance of the two Haemophilus species and indicating any
morphological distinctions you observed between them. Describe the colonial morphology of each Haemophilus species

Colonial Morphology on

Organism

Gram-Stain Appearance

Chocolate Agar

Blood Agar

H. influenzae

H. parainfluenzae

3. Diagram the appearance of the growth of each Haemophilus species on the nutrient agar plate with X andV disks and

interpret.

H. influenzae

Interpretation:

H. parainfluenzae

Interpretation:

166

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

4. Diagram the appearance of the growth of each Haemophilus species on the Quad Plate and interpret (see colorplate 35)

H. influenzae

nterpretation:

H. parainfluenzae
nterpretation:

Key: Quadrant

Haemophilus ID Quad Plates

Supplement

X
V

XandV
5% blood and V

5. Diagram the appearance of the demonstration plates and interpret

H. influenzae

Interpretation:

Blood agar plate

H. influenzae
Interpretation:

Nutrient agar plate

H. parainfluenzae

Interpretation:

H. parainfluenzae

Interpretation:

Haemophilus, Corynebacteria, and Bordetella

167

Morello-Mizer-Granato:

I. Diagnostic 8. Microbiology of the

Laboratory Manual and Microbiology in Action Respiratory Tract Companies, 2003

Workbook in Microbiology,
7/e

EXPERIMENT 22.2 Corynebacteria

The genus Corynebacterium is comprised of many species, but Corynebacterium diphtheriae has the most important pathogenic prop-
erties. C. diphtheriae is the agent of diphtheria, a serious throat infection and a systemic, toxic disease. If they have an opportunity
to colonize in the throat, virulent strains of this organism not only damage the local tissue (causing formation of a pseudomem-
brane), but they produce a powerful exotoxin that disseminates through the body from the site of its production in the upper res-
piratory tract. When this toxin reaches the cells of the myocardium, adrenal cortex, or other vital organs, it has very damaging
effects. The systemic effect of toxin is the primary cause of death in those patients with diphtheria who are not promptly recog-
nized and treated. In rare cases, the skin rather than throat is affected, but all toxic disease manifestations are the same. The dis-
ease is controlled by maintaining active immunization with diphtheria toxoid (purified toxin treated so that it is no longer toxic
but remains immunogenic).

Early clinical and laboratory recognition of diphtheria infection developing in the throat is critical because prompt
treatment with antitoxin (antibody that neutralizes the toxin) and an appropriate antimicrobial agent are required for patient re-
covery. In the laboratory, the microbiologist must distinguish C. diphtheriae from other corynebacteria that are harmless members
of the normal flora but usually present in throat specimens. Identification must be made as rapidly as possible, for the laboratory
report is essential for clinical decisions. In patients with decreased immune function (referred to as immunocompromised patients),
corynebacteria other than C. diphtheriae may cause disease by invading the weakened host to produce bacteremia and pneumo-
nia. In spite of widespread immunization in the United States, occasional sporadic outbreaks of both pharyngeal and skin diph-
theria occur. In the 1990s, more than 150,000 cases and 5,200 deaths were reported in the former Soviet Union, primarily among
adults who were not vaccinated as children.

Corynebacteria are gram-positive, nonmotile, nonsporing bacilli that, like staphylococci, are widely distributed
on our bodies. Nonpathogenic species are often called diphtheroids because their microscopic morphology resembles that of
C. diphtheriae. These rods often contain granules that stain irregularly (they are said to be metachromatic) and give the organisms a
beaded or clubbed appearance. Pairs or small groups characteristically fall into patterns that look like Chinese letters, or likeVs
andYs. Usually, C. diphtheriae is longer, thinner, and more beaded in appearance than diphtheroids, which are generally short and
thick by comparison. This differentiation can be very difficult to make in examining a stained throat smear and cannot be relied
on for accurate diagnosis.

In culture, corynebacteria are not highly fastidious. They grow well aerobically on nutrient media. When diphtheria
is suspected, the primary isolation media used for throat swabs include those that are selective and differential for C. diphtheriae
and also blood agar. Loeffler's serum medium is commonly used for direct inoculation and transport of the swab to the labora-
tory. This is a firm coagulated serum medium containing nutrient broth, prepared as a tubed slant. Many of the normal throat
flora organisms do not grow on Loeffler's medium, so it is somewhat selective. In addition, when C. diphtheriae grows on this
medium its microscopic morphology is characteristic. A methylene-blue-stained smear reveals thin, club-shaped bacilli and
reddish-purple metachromatic granules. This appearance can lead to a rapid presumptive diagnosis of diphtheria. Blood agar to
which potassium tellurite has been added constitutes a good selective and differential medium for primary isolation of C. diph-
theriae. The tellurite not only suppresses many other throat flora, but it is metabolized by C. diphtheriae with resulting blackening
of its colonial growth. Thus the organism is differentiated from others that can grow on the agar medium. The use of blood agar
in the initial battery assures the recovery of corynebacteria, as well as other pathogenic bacterial species that might be present,
and differentiates those that are hemolytic.

The biochemical differentiation of C. diphtheriae from other corynebacteria is based on carbohydrate fermentations.
Demonstration of toxin production is essential in reporting identification of a strain of C. diphtheriae, for not all strains are toxi-
genic. Tests for virulence, that is, toxigenicity are made either in experimental animals (rabbits or guinea pigs) or by an in vitro
method (Elek test). In the Elek test, antitoxin strips are placed on agar plates to detect toxin produced by strains of C. diphtheriae
growing on the medium. Although virulence tests are not included in this exercise, you should familiarize yourself with these
procedures and their purpose by reading the reference material cited for the exercise.

168

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Purpose

To identify corynebacteria in smears and cultures

Materials

Blood agar plate

Blood tellurite plate

Tubed phenol red glucose broth

Tubed phenol red maltose broth

Tubed phenol red sucrose broth

Prepared Gram- and methylene-blue-stained smears of C diphtheriae

Loeffler's slant cultures of Cory 'neb acterium xerosis and Cory neb acterium pseudodiphtheriticum

Nutrient agar slant culture of Escherichia coli

Procedures

1. Prepare a Gram stain and a methylene blue stain (see Exercise 4) from either one of the Cory neb acterium cultures. Read and
compare these with the Gram- and methylene-blue-stained smear of C diphtheriae, recording your observations under
Results.

2. Inoculate a blood agar plate with either one of the Cory neb acterium cultures. Streak for isolation.

3. Divide the blood tellurite plate into two parts with your marker. Inoculate one side of the plate with a Cory neb acterium
species, the other side with E. coli.

4. Inoculate the C. xerosis culture into each of the three carbohydrate broths. Repeat with the culture of C.
pseudodiphtheriticum .

5. Incubate all plate and tube cultures at 35°C for 24 hours.

6. Examine your cultures and record your observations.

Haemophilus, Corynebacteria, and Bordetella

169

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Results

1. Illustrate the microscopic morphology of corynebacteria:

Gram stain

Methylene blue stain

Gram stain

Methylene blue stain

C. diphtheriae

2. Describe the appearance of a Cory neb acterium species on blood agar.

3. Describe the appearance of E. coli and of a Cory neb acterium species on blood tellurite agar.

4. Complete the following table

Name of Organism

Glucose

Maltose

Sucrose

C. xerosis

C. pseudodiphtheriticum

C. diphtheriae

170

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

EXPERIMENT 22.3 Bordetella

Bordetella pertussis is the etiologic agent of whooping cough. This very fastidious organism grows best on special media. The two
most common are Bordet-Gengou (BG) agar, which is enriched with glycerin, potato, and 30% defibrinated sheep blood, and
Regan-Lowe (RL) agar, which consists of charcoal agar, defibrinated horse blood, and an antimicrobial agent to inhibit growth
of normal respiratory flora. The charcoal is present to adsorb toxic substances that might be present in the agar. Visible colonies
are produced only after three to five days incubation in a microaerophilic atmosphere. On BG medium, the colonies are raised,
rounded, and glistening (resembling mercury droplets or a bisected pearl), and usually have a hazy zone of hemolysis. On RL
medium, the colonies are round, domed, shiny, and may run together slightly.

B. pertussis is a gram-negative bacillus resembling Haemophilus species, with which it was once classified. When
whooping cough is suspected, the best specimen for laboratory diagnosis is a nasopharyngeal swab, but throat swabs may be used
in addition.

Purpose

Materials

To observe Bordetella pertussis in demonstration and to examine a throat culture on Bordet-Gengou
(BG) and Regan-Lowe (RL) media

Prepared Gram stains of B. pertussis
Projection slides, if available
Bordet-Gengou and Regan-Lowe agar plates

Procedures

1. Examine the prepared Gram stains and record your observations.

2. Observe colonial morphology as demonstrated.

3. Collect a throat specimen as in Experiment 21.5 and inoculate the Bordet-Gengou and Regan-Lowe plates. Incubate the
plates at 35°C in a candle jar or C0 2 incubator for 24 hours.

Results

1. Describe the microscopic morphology of B. pertussis.

2. Describe your observations of demonstration material.

3. Describe the appearance of your Bordet-Gengou and Regan-Lowe throat culture plates

Haemophilus, Corynebacteria, and Bordetella

171

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

What is the total number of colonies? BG

How many colony types can be distinguished? BG

How does the flora compare with that of your throat culture in Experiment 21.5?

Questions

1 . What is chocolate agar?

2. Define X andV factors.

3. Name three species of Haemophilus and indicate the types of infection with which each may be associated

4. What is the satellite phenomenon?

5. What is the incidence of Haemophilus influenzae as an agent of meningitis in infants and children under 3 years of age? In
adults?

6. Why is a direct smear of spinal fluid essential when bacterial meningitis is suspected?

7. Name the etiologic agent of diphtheria and describe the media used to isolate it from a clinical specimen

172

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

8. How can a diphtheroid be distinguished from the agent of diphtheria?

9. What is a virulence test and how is it performed?

10. Can diphtheria be transmitted directly via the respiratory route? If so, how?

1 1 . How is diphtheria prevented?

12. Why is early laboratory diagnosis of diphtheria important?

13. What is the etiologic agent of whooping cough and what media are used to isolate it?

14. What is the preferred specimen for diagnosing whooping cough?

15. How can transmission of respiratory infections be prevented?

Haemophilus, Corynebacteria, and Bordetella

173

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

16. Complete the following chart

Normal Habitat

Key Tests for
Lab Identification

Hemolysis
(Type)

Microscopic

Morphology and

Gram-Stain

Reaction

Tract and with Disea

Specimens for
Lab Diagnosis

he Respiratory

Disease

Bacteria Associated with t

Etiologic Agent

Beta-hemolytic

streptococci group A

Alpha-hemolytic
streptococci

S. pneumoniae

E. faecalis

S. epidermidis

S. aureus

C. diphtheriae

Diphtheroids

H. influenzae

H. haemolyticus

B. pertussis

174

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Name

Class

Date

Exercise

Clinical Specimens

from the Respiratory Tract

Now that you have had some experience with the normal flora and the most common bacterial
pathogens of the respiratory tract, you will have an opportunity to apply what you have learned to
the laboratory diagnosis of respiratory infections. In Experiments 23.1 and 23.2 you will prepare
cultures of a throat swab and a sputum specimen, each simulating material that might be obtained
from a sick patient. These cultures should be examined with particular attention to the "physician s"
stated tentative diagnosis. Significant organisms that may be isolated must be identified and re-
ported. If organisms that you consider to be part of the normal flora are isolated, report as "nor-
mal flora."

In Experiment 23.3, you will set up an antimicrobial susceptibility test on an organism
isolated from one of the clinical specimens previously cultured, and prepare a report of the results
for the "physician."

EXPERIMENT 23.1 Laboratory Diagnosis of a Sore Throat

Purpose

To identify bacterial species in a simulated clinical throat culture as quickly as possible

Materials

Swab in a tube of broth, accompanied by a laboratory request for culture

Patient's name: Mary Peters

Age: 6 years

Physician: Dr. M. Selby

Tentative clinical diagnosis: "Strep throat"
Blood agar plate (BAP)
Forceps

Bacitracin disks (A disks)

Tubes containing 0.4 ml streptococcal extraction enzyme or prepared extract
Capillary pipettes
Latex test kit for serological typing

Procedures

1. Using the swab in the "specimen" tube, inoculate a small area of the blood agar plate. Discard the swab in disinfectant
solution. With a sterilized inoculating loop, streak the remainder of the plate to obtain isolated colonies. After you have
completed the streaking step, make a few shallow cuts with your loop in the area of the original inoculum.

2. Incubate the plate at 35°C for 24 hours.

3. After the plate has incubated, examine it carefully for the presence of hemolysis and record the type of hemolysis you see
on the laboratory work card (page 176). Record the colonial morphology and make Gram stains of different colony types

4. On the basis of your findings, record on the Microbiology Laboratory Report (page 176) the preliminary result that you
will give to the "physician" when he or she calls for a report.

5. With your sterilized inoculating loop, pick up a few colonies that appear to produce beta-hemolysis. Streak the inoculum
heavily on a portion of a blood agar plate. Using heated and cooled forceps, place a bacitracin disk on the area of heavy
inoculum.

Clinical Specimens from the Respiratory Tract

175

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

6. Incubate the plate for 24 hours at 35°C and record the result on the laboratory work card.

7. If the instructor has not prepared an extract of beta-hemo lytic colonies grown from the patient's throat specimen, follow
steps 8 and 9.

8. With your sterile loop, make a light suspension of "suspicious" beta-hemolytic colonies in 0.4 ml of extraction enzyme.
Five or six colonies should be sufficient.

9. Place the suspension in a 37°C water bath or in a beaker of water warmed to 37°C in an incubator. After 5 minutes, shake
the tube and continue incubating for no less than 10 minutes and up to one hour.

10. Following the manufacturer's directions, mix one drop of group A latex reagent and one drop of group B latex reagent
each with a drop of your extract on a glass slide or special reaction card provided. Rock the slide back and forth for at least
one minute looking for the formation of agglutinated latex particles and a clearing of the background (see fig. 21.1).

11. If agglutination is present, record the group (A or B) on your work card along with the final organism identification(s).

12. Complete the Microbiology Laboratory Report for the "physician."

Results

1. Laboratory work card (record of your work to be kept on file for at least two years)

Culture No.:

Patient's Name:

Physician:

Specimen Type:

Date Received:

Date Reported:

Colony
Morphology

Gram-stain
Appearance

Type of
Hemolysis

Bacitracin
Disk (+ or -)

Group (by
Latex)

Name of
Organism

Final Report:

Signature:

2. Final laboratory report to "physician."

MICROBIOLOGY LABORATORY REPORT

Patient's Name:

Sex:

Age:

Date

Tentative Diagnosis:

Laboratory Findings

Preliminary Culture Result:

Final Culture Result:

SIGNATURE:

Date Received

LABORATORY NAME

PHYSICIAN'S NAME

Date Reported:

176

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

EXPERIMENT 23.2 Laboratory Diagnosis of Bacterial Pneumonia

Purpose

To identify bacterial species in a simulated sputum as quickly as possible

Materials

Simulated sputum in a screw-cap container, accompanied by a laboratory request for culture

Patient's name: Richard Wilson

Age: 72 years

Physician's name: Dr. E Smythe

Tentative diagnosis: lobar pneumonia
Blood agar plate (BAP)
Mannitol salt agar plate (MSA)
Dropping bottle containing 3% hydrogen peroxide
Tubed plasma (0.5-ml aliquots)
Sterile 1.0-ml pipettes
Pipette bulb or other aspiration device

Procedures

1. Make a Gram stain of the simulated sputum specimen. Record the results and place the information on your work card
(page 178).

2. With your sterilized inoculating loop, inoculate a blood agar and a mannitol salt agar plate. Streak each for isolation of
colonies. Incubate both plates at 35°C for 24 hours.

3. When the "physician" calls, refer to your work card and give him or her specific information about your microscopic
interpretation of the Gram-stained smear.

4. After the plates have incubated, examine each carefully. Record colonial morphology on the work card, and make Gram
stains of different colony types on each medium.

5. Perform the catalase test on different colony types on each medium. Be careful not to scrape the surface of the blood agar
plate or a false-positive reaction will occur.

6. Perform the coagulase test with any colony on either plate that appears to be a Staphylococcus. With a sterilized inoculating
loop, pick up a colony and emulsify it directly in 0.5 ml of plasma. Incubate the plasma tube and read at intervals from 30
minutes to 4 hours. If necessary, incubate the tube overnight and read the result the next day. Record the result on your
work card.

7. Prepare a final report for the "physician."

Clinical Specimens from the Respiratory Tract

177

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Results

1. Laboratory work card (record of your work to be kept on file at least two years)

Culture No.:

Patient's Name:

Physician:

Specimen Type:

Date Received:

Date Reported:

Colony
Morphology

Gram-Stain
Appearance

Hemolysis

Mannitol

Catalase

Coagulase

Name of
Organism

2. Final laboratory report to "physician."

Patient's Name:

Sex:

Tentative Diagnosis:

Direct Smear Report:

Final Culture Result:

SIGNATURE:

LABORATORY NAME

PHYSICIAN'S NAME

Date Reported:

MICROBIOLOGY LABORATORY REPORT

Age:

Date

Laboratory Findings

Date Received

EXPERIMENT 23.3 Antimicrobial Susceptibility Test of an Isolate from a Clinical Specimen

Purpose

Materials

To determine the antimicrobial susceptibility pattern of an organism isolated from a clinical
specimen (in Experiment 23.2)

Nutrient agar plates (Mueller-Hinton if available)

Antimicrobial disks

Sterile swabs

Forceps

Blood agar plate with pure culture of isolate

Tube of nutrient broth (5.0 ml)

McFarland No. 0.5 turbidity standard

178

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Procedures

1. Using a sterile swab, take some of the growth of a pure culture you isolated from the clinical specimen in Experiment
23.2, and emulsify it in 5.0 ml of nutrient broth until the turbidity is equivalent to the McFarland 0.5 standard. Discard
the swab.

2. Take another sterile swab, dip it in the broth suspension, drain off excess fluid against the inner wall of the tube.

3. Inoculate an agar plate as described in Experiment 15.1.

4. Follow procedures 4 through 7 of Experiment 15.1.

5. Incubate the agar plate at 35 °C for 24 hours.

6. Examine plates and record results for each antimicrobial disk as S (susceptible), I (intermediate), or R (resistant).

7. Prepare a report for the "physician."

Results

Record results:

MICROBIOLOGY LABORATORY REPORT

Patient's Name:

Sex:

Age:

Date

Tentative Diagnosis:

Antimicrobial Susceptibility Report

Name of Organism:

Source:

Antimicrobial Agent

SIGNATURE:

Date Rec'd.:

Reported

LABORATORY NAME:

PHYSICIAN'S NAME:

Clinical Specimens from the Respiratory Tract

179

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

Questions

1 . Is a Gram stain of a throat swab useful for making a rapid, presumptive diagnosis of
a. Strep sore throat?

b. Diphtheria:

2. Is a Gram stain of a sputum specimen useful in making a rapid, presumptive diagnosis of pneumonia?

3. Why should sputum specimens be submitted to the laboratory in screw-cap containers?

4. What is the clinical significance of staphylococci isolated from throat specimens:

5. What is the clinical significance of staphylococci isolated from sputum specimens?

180

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

8. Microbiology of the
Respiratory Tract

6. What is the clinical significance of beta-hemolytic streptococci isolated from throat specimens:

7. In a Gram stain of a sputum specimen, which type of body cell provides an indication that the specimen represents
material from an active infection? Why?

8. Should an antimicrobial susceptibility test be performed on every bacterium isolated from a clinical specimen?

9. Why are certain antimicrobial agents tested with either gram-positive or gram-negative bacteria whereas others are tested
with both?

Clinical Specimens from the Respiratory Tract

181

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Section

Microbiology of the
Intestinal Tract

Morello-Mizer-Granato:

I. Diagnostic 9. Microbiology of the

Laboratory Manual and Microbiology in Action Intestinal Tract Companies, 2003

Workbook in Microbiology,
7/e

Name

Class Date

Exercise 7 ZL The Enterobacteriaceae (Enteric Bacilli)

The human intestinal tract is inhabited from birth by a variety of microorganisms acquired, at first,
from the mother. Later, organisms are carried in with food and water or introduced by hands and
other objects placed in the mouth. Once inside, many cannot survive the acid conditions en-
countered in the stomach or the activity of digestive enzymes in the upper part of the intestinal
tract. The small intestine and lower bowel, however, offer appropriate conditions for survival and
multiplication of many microorganisms, primarily anaerobic species, that live there without harm-
ing their host.

When feces are cultured on bacteriologic media, it becomes apparent that most faculta-
tively anaerobic bacterial species normally inhabiting the intestinal tract are gram-negative, non-
sporing bacilli with some culture characteristics in common. This group of organisms is known as
"enteric bacilli," or, in taxonomic terms, the family Enterobacteriaceae. However, some of the bac-
terial species that are classified within this group are important agents of intestinal disease. These
usually are acquired through ingestion and are referred to as "enteric pathogens ."The anaerobic or-
ganisms play little role in enteric disease and are not recovered in routine fecal cultures because they
require special techniques for isolation (see Exercise 28).

One enteric organism that normally inhabits the intestinal tract, Klebsiella pneumoniae, is
also sometimes associated with pneumonia. It is a gram-negative, nonmotile bacillus (see color-
plate 5) that can cause infection when it finds an opportunity to invade the lungs or other soft tis-
sue and the bloodstream. Like the pneumococcus, pathogenic strains of K. pneumoniae possess a
slimy, protective capsule that is larger and more pronounced than most bacterial capsules (see color-
plate 12).

In the experiments of this exercise we shall first study some of the cultural characteris-
tics of those enteric bacilli that normally inhabit the bowel, and then apply this knowledge to un-
derstanding the methods used for isolating and identifying the important enteric pathogens.

The gram-negative enteric bacilli are not fastidious organisms. They grow rapidly and
well under aerobic conditions on most nutrient media. The use of selective and differential culture
media plays a large role in their isolation and identification. Their response to suppressive agents
incorporated in culture media and their specific use of carbohydrate or protein components in the
media provide the key to sorting and identifying them (review the exercises in Section VII). A fi-
nal identification by serological means can also be made as performed in Experiment 24.4.

184

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

EXPERIMENT 24.1

Identification of Pure Cultures of Enterobacteriaceae from the Normal
Intestinal Flora

Purpose

To learn how enteric bacilli are identified biochemically

Materials

Slants of triple-sugar iron agar (TSI)

SIM tubes

MR-VP broths

Slants of Simmons citrate agar

Urea broths

Slants of phenylalanine agar

Lysine and ornithine decarboxylase broths

Mineral oil in dropper bottle

Sterile 1.0-ml pipettes

Pipette bulb or other aspiration device

Sterile empty test tubes

Xylene

Ko vac's reagent

Methyl red indicator

5% alphanaphthol

40% sodium or potassium hydroxide

10% ferric chloride

Nutrient agar slant cultures of Escherichia coli, Citrobacter koseri, Klebsiella pneumoniae, pigmented
and nonpigmented Serratia marcescens, Enterobacter aerogenes, Proteus vulgaris, and Providencia stuartii

;ht)

Procedures

1. Each student will be assigned two of the nutrient agar slant cultures. Inoculate each culture into the following media.
TSI (using a straight wire inoculating needle, stab the butt of the tube and streak the slant; the closure should not be ti;
SIM tubed agar (stab 1/4 of the depth of the medium)

MR-VP broth

Simmons citrate agar slant

Urea broth

Phenylalanine agar slant

Lysine decarboxylase broth

Ornithine decarboxylase broth

2. Carefully overlay the surfaces of the lysine and ornithine broths with 1/2 inch of mineral oil.

3. Incubate all subcultures at 35°C for 24 hours.

4. Before returning to class, read the following descriptions of the biochemical reactions to be observed and instructions for
performing them.

Biochemical Reactions and Principles

A. TSI. TSI contains glucose, lactose, and sucrose as well as a pH-sensitive color indicator. It also contains an iron ingredient
for detecting hydrogen sulfide production, which blackens the medium if it occurs (compare with H 2 S detection in SIM
medium). Kligler's Iron Agar is similar but sucrose has been omitted (see colorplate 19).

Fermentation of the sugars by the test organism is interpreted by the color changes in the butt and the slant of the
medium.

The Enterobacteriaceae (Enteric Bacilli)

185

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Butt

Slant

Color*

Interpretation

Yellow

Glucose and lactose, and/or sucrose fermented

Yellow

Orange-red or pink

Glucose only fermented

Orange-red

No fermentation

Bubbles

Gas production

*Yellow signifies acid production, orange-red a neutral or negative reaction, and pink an alkaline reaction (breakdown of protein rather than carbohydrate).

B. IMViC Reactions. The term IMViC is a mnemonic for four reactions: the letter I stands for the indole test, M for the methyl
red test, V for the Voges-Proskauer reaction (with a small i added to make a pronounceable word), and C for citrate.

The indole test for tryptophan utilization was described in Experiment 17.3. Perform it in the same way here, using xy-
lene and Ko vac's reagent added to SIM cultures.

Methyl red is an acid-sensitive dye that is yellow at a pH above 4.5 and red at a pH below 4.5. When the dye is added
to a culture of organisms growing in glucose broth, its color indicates whether the glucose has been broken down completely to
highly acidic end products with a pH below 4.5 (methyl red positive, red), or only partially to less acidic end products with a pH
above 4.5 (methyl red negative, yellow).

The Voges-Proskauer test can be performed on the same glucose broth culture used for the methyl red test (MR-VP
broth). One of the glucose fermentation end products produced by some organisms is acetylmethylcarbinol. The VP reagents (al-
phanaphthol and potassium hydroxide solutions) oxidize this compound to diacetyl, which in turn reacts with a substance in the
broth to form a new compound having a pink to red color. W-positive organisms are those reacting in the test to give this pink
color change.

To perform the MR andVP tests, first withdraw 1.0 ml of the MR-VP broth culture, place this in an empty sterile
tube, and set the tube aside for theVP test. Discard the pipette in disinfectant.

Do a methyl red test by adding 5 drops of methyl red indicator to 5.0 ml of MR-VP broth culture. Observe and record
the color of the dye.

Perform aVP test by adding 0.6 ml of alphanaphthol and 0.2 ml of KOH solutions to 1.0 ml of MR-VP broth cul-
ture. Shake the tube well and allow it to stand for 10 to 20 minutes. Observe and record the color.

Citrate can serve some organisms as a sole source of carbon for their metabolic processes, but others require organic
carbon sources. The citrate agar used in this test contains bromthymol blue, a dye indicator that turns from green to deep blue in
color when bacterial growth occurs. If no growth occurs, the medium remains green in color and the test is negative.

C. Motility and H 2 S Production. These properties are observed in SIM cultures, as described in Experiment 17.3.

D. Urease Production. The test for urease was described in Experiment 18.1. Read and record the results of your cultures
tested in urea broth.

E. Phenylalanine Deaminase (PD). The test for production of this enzyme was described in Experiment 18.5. Perform it
in the same way, adding ferric chloride solution to your cultures on phenylalanine agar medium.

F. Lysine (LD) and Ornithine (OD) Decarboxylases. Lysine and ornithine are amino acids that can be broken down by
decarboxylase enzymes possessed by some bacteria. During this process, the carboxyl (COOH) group on the amino acid mole-
cule is removed, leaving alkaline end products that change the color of the pH indicator. In the broth test you use, a positive test
is a deep purple color; a negative test is yellow. The reactions work best when air is excluded from the medium; therefore, the
broths are layered with mineral oil after inoculation and before incubation.

186

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Results

Record results for your cultures in the following table. Obtain results for other cultures by observing those assigned to fellow
students.

TSI

H 2 S

Motility

Urease f

Genus of
Organism

Slant*

Butt*

Escherichia

Citrobacter

Klebsiella

Enterobacter

Serratia*

Proteus

Providencia

*A = acid; K = neutral or alkaline; G = gas.

"•"If positive, specify time.

*1 = pigmented strain; 2 = nonpigmented strain

EXPERIMENT 24.2 Isolation Techniques for Enteric Pathogens

Bacterial diseases of the intestinal tract can be highly communicable and may spread in epidemic fashion. Their agents enter the
body through the mouth in contaminated food or water, or as a result of direct contacts with infected persons. Among the
Enterobacteriaceae, the organisms of pathogenic significance belong to the genera Salmonella, Shigella, and Yersinia. Also certain
Escherichia coli strains can produce disease by several mechanisms including invading tissue or producing toxins. Such strains are
referred to as enteroinvasive or enterotoxigenic, respectively

The many species of Salmonella can be distinguished on the basis of their serological properties as well as their bio-
chemical activities. These organisms characteristically cause acute gastroenteritis when ingested, but some also can find their way
into other body tissues and cause systemic disease. Among these, the most important is Salmonella typhi, the agent of typhoid fever,
a serious systemic infection. The salmonellae are gram-negative bacilli that are usually motile. They usually do not ferment lac-
tose but display a variety of other fermentative and enzymatic activities.

Shigella species are the agents of bacillary dysentery. These organisms are gram negative and nonmotile. They usually
do not ferment lactose. In fermenting other carbohydrates they produce acid but not gas (with one exception) . They can also be
identified to species by serological methods.

Yersinia enter ocolitica is the cause of acute enterocolitis, primarily in children. Its symptoms may mimic those produced
by Salmonella, Shigella, or enteroinvasive E. coli. Occasionally, the symptoms are more suggestive of acute appendicitis. The or-
ganism grows better at room temperature (25°C) than at 35°C; therefore, it may not be isolated unless the physician notifies the
laboratory that yersiniosis is suspected. In this case the isolation plates are incubated at both temperatures. Yersinia are gram-
negative bacilli that are motile at 25 °C but not at 35°C. They ferment sucrose, but not lactose. Y. enter ocolitica is urease positive.

Disease-producing E. coli were once thought to be associated only with epidemic diarrhea in babies, but they are now
known to be a common cause of "traveler's diarrhea" ("turista") and a variety of other gastrointestinal diseases. Some of these
strains may be distinguished from others by immunological typing of cell wall (O) and flagellar (H) antigens. In addition, an en-
zyme immunoassay is available to detect E. coli toxin directly in stool specimens.

The Enterobacteriaceae (Enteric Bacilli)

187

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Figure 24.1 Flowchart showing procedures for isolation and initial identification of Enterobacteriaceae by culture

Feces or rectal swab

Enrichment broth Direct plating on differentia! and selective media

Subculture on differential and selective media

Isolated
colonies
Lactose*
Lactose

Isolated
colonies
Lactose +
Lactose

Triple sugar iron agar

Acid slant
Acid butt

i^^"^

Alkaline slant

Acid butt

Gas

Alkaline slant

Acid butt

No gas

E. cofi

Klebsiella

Enterobacter

Citrobacter

Yersinia *

Salmonella f

Providencia

Proteus t

Salmonella typhi f

Sh igelta

Providencia

Proteus f

Select key tests: IMViG, Urease, PD, OD, LD, Motility, Sugars, Enzymes

•Although Yersinia is lactose negative, It is sucrose positive,
tH a S produced

The pathogenic Enterobacteriaceae are first isolated from clinical specimens by using highly selective media to suppress
the normal flora in feces and to allow the pathogens to grow. Many of these media contain lactose, with a pH indicator, to dif-
ferentiate the lactose-nonfermenting Salmonella, Shigella, and Yersinia (colorless on these agars) from any lactose-fermenting nor-
mal flora that may survive (pink or red colonies, see colorplates 16 and 17). EMB or MacConkey agar is commonly used, to-
gether with two more highly selective media such as Hektoen enteric (HE) and bismuth sulfite (BiS) agars. In addition, an
"enrichment" broth containing suppressants for normal enteric flora may be inoculated. After an incubation period to allow en-
teric pathogens to multiply, the enrichment broth is subcultured onto selective and differential agar plates to permit isolation of
the pathogen from among the suppressed normal flora. Subsequent identification procedures are based on the same types of bio-
chemical tests that you have studied, but may be more extensive to differentiate the enzymatic activities of enteric species that are
closely related to Salmonella or Shigella.

Other bacterial pathogens are associated with intestinal disease. Campylobacter jejuni, a curved, gram-negative bacillus,
may be the most common bacterial agent of diarrhea in children and young adults (see colorplate 6). It has relatively strict growth
requirements and special procedures must be used to isolate it in the laboratory. Some vibrios, notably Vibrio cholerae (the agent
of cholera) and Vibrio parahaemolyticus (of the family Vibrionaceae) , represent other examples of significant intestinal tract pathogens.
These organisms can also be isolated from cultures of fecal material and identified by their characteristic morphological and meta-

188

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Table 24.2-1

En terobacteriaceae

Important
Genera

Pathogenicity

Lactose

Motility

H 2 S

Urea

Salmonella

Typhoid fever
Gastroenteritis

—

——

+ +

Shigella

Bacillary dysentery

- or late

±*

—

Escherichia

Normal flora in Gl tract
Urinary tract infection

Infant and traveler's diarrhea

Citrobacter

Normal flora
Urinary tract infection

—

^—

—

Klebsiella

Respiratory infection
Urinary tract infection

—

+ late

—

Enterobacter

Normal flora
Urinary tract infection

—

- or late

——

Serratia

Normal flora
Urinary tract infection

Nosocomial infection

- or late

Proteus

Normal flora
Urinary tract infection

—

+ rapid

—

Providencia

Normal flora
Urinary tract infection

—

Yersinia

Gastroenteritis
Mesenteric adenitis

—

+ (25°C)
-(35°C)

—

*± = Some species or strains +, some -
"•"S. typhi is OD negative

bolic properties. Although the choice of isolation media and identification procedures must be varied according to the nature of
the organism being sought in a specimen, the principles are the same as those we are following here. You should read further about
infectious diseases acquired through the alimentary tract, including bacterial food poisonings, and be prepared to discuss the es-
sential features of their laboratory diagnosis, beginning with the collection of appropriate specimens.

In this experiment and Experiment 24.3 we shall review the basic methods for isolation and identification of enteric
pathogens belonging to the genera Salmonella and Shigella. The general procedures are summarized in the flowchart shown in fig-
ure 24.1, and the biochemical reactions that you have studied in identifying Enterobacteriaceae are reviewed in table 24.2-1.

Purpose

Materials

To observe the morphology of Salmonella and Shigella species on selective and differential
isolation plates

EMB or MacConkey plates

Hektoen enteric (HE) plates

Bismuth sulfite (BiS) agar plates

Agar slant cultures of a Salmonella species and a Shigella species

The Enterobacteriaceae (Enteric Bacilli)

189

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Procedures

1. Inoculate a Salmonella culture on each of the selective media provided. Streak for isolation. Do the same with a Shigella
culture.

2. Incubate your six plates at 35°C for 24 hours. Continue the incubation of BiS plates for 48 hours.

3. Examine all plates and record your observations under Results.

Results

Colonial Morphology on

Name of Organism

EMB

MacConkey

BiS

Salmonella

Shigella

Look up the composition of HE agar. List the major ingredients and state why you think they should affect the appearance of
Salmonella in the way you have reported.

EXPERIMENT 24.3 Identification Techniques for Enteric Pathogens

Purpose

To study some biochemical reactions of Salmonella and Shigella

Materials

TSI slants

SIM tubes

MR-VP broths

Simmons citrate slants

Urea broth tubes

Phenylalanine agar slants

Lysine and ornithine decarboxylase broths

Mineral oil in dropper bottle

Sterile 1.0-ml pipettes

Pipette bulb or other aspiration device

Sterile empty tubes

Xylene

Ko vac's reagent

Methyl red indicator

5% alphanaphthol

40% sodium or potassium hydroxide

10% ferric chloride

Agar slant cultures of Salmonella and Shigella species

Procedures

1. You will be assigned a culture of either Salmonella or Shigella. Inoculate one tube of each medium provided (i.e.:TSI; SIM;
MR-VP broth; citrate slant; urea, lysine, and ornithine broths; and phenylalanine agar).

2. Incubate all tubes at 35°C for 24 hours.

3. Complete the IMViC and PD tests (see Experiment 24.1). Read and record all biochemical reactions under Results.
Observe your neighbors' results and record all information for both organisms.

190

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Results

TSI

H 2 S

Motility

Urease

Name of
Organism

Slant

Butt

Salmonella

Shigella

EXPERIMENT 24.4 Serological Identification of Enteric Organisms

In addition to culture identification techniques, antibody reagents are available to detect O and H antigens of gram-negative en-
teric bacilli (usually Salmonella and Shigella species and Escherichia coli). The antibodies are used in a simple bacterial agglutination
test in which an unknown organism isolated in culture is mixed with the antibody reagent (antiserum). If the antibodies are spe-
cific for the organism's antigenic makeup, agglutination (clumping) of the bacteria occurs. If the antiserum does not contain spe-
cific antibodies, no clumping is seen. A control test in which saline is substituted for the antiserum must always be included to be
certain that the organism does not clump in the absence of the antibodies.

In this exercise, you will see how a microorganism can be identified by an interaction of its surface antigens with a
known antibody that produces a visible agglutination of the bacterial cells.

Purpose

To illustrate identification of a microorganism by the slide agglutination technique

Materials

Glass slides

70% alcohol

Saline (0.85%)

Capillary pipettes

Heat-killed suspension of E. coli or Salmonella

E. coli or Salmonella antiserum

Procedures

1 . Carefully wash a slide in 70% alcohol and let it air dry

2. Using a glass-marking pen or pencil, draw two circles at opposite ends of the slide.

3. Using a capillary pipette, place a drop of saline in one circle. Mark this circle "C," for control.

4. With a fresh capillary pipette, place a drop of antiserum in the other circle.

5. Use another pipette to add a drop of heat-killed bacterial suspension (this is the antigen) to the material in each circle.

6. Pick up the slide by its edges, with your thumb and forefinger, and rock it gently back and forth for a few seconds.

7. Hold the slide over a good light and observe closely for any change in the appearance of the suspension in the two circles

The Enterobacteriaceae (Enteric Bacilli)

191

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Results

1. In the following diagram indicate any visible difference you observed in the suspensions at each end of the slide

Antiserum

Saline control

2. State your interpretation of the result.

EXPERIMENT 24.5

Techniques to Distinguish Nonfermentative Gram-Negative Bacilli
from Enterobacteriaceae

A variety of gram-negative bacilli that normally inhabit soil and water or live as commensals on human mucous membranes may
contaminate specimens sent to the microbiology laboratory for culture or, more importantly, may produce opportunistic human
infections. Although the Gram-stain appearance and cultural characteristics of the organisms may resemble those of
Enterobacteriaceae, they are relatively inactive in the common biochemical tests. In particular, they either fail to metabolize glucose
or they degrade it by oxidative rather than fermentative pathways. For this reason these organisms are often referred to as "glu-
cose nonfermenters" (as opposed to the glucose-fermenting enteric bacilli). A number of bacterial genera and species are included
in this group of nonfermenters. The most important from a medical aspect is Pseudomonas aeruginosa, which is most often involved
in human infection. Because of the different clinical implications and the varying antimicrobial susceptibility patterns (nonfer-
menters are more highly resistant to common antimicrobial agents) it is important to distinguish nonfermenters from enteric
bacilli. The characteristics of a few nonfermenting bacteria are listed in table 24.5-1 and compared with those of the
En terobacteriaceae.

Table 24.5-1 Characteristics of Nonfermenting Gram-Negative Bacilli

O-F glucose*

Complete

Butt of TSI

Open

Closed

Oxidase

Hemolysis

Diffusible Green Pigment

Pseudomonas

No change

—

aeruginosa

Acinetobacter

No change

—

baumannii

Acinetobacter Iwoffi

No change

—

Alcaligenes faecalis

No change

—

Enterobacteriaceae

Yellow

—

- or +

—

*A positive test is a yellow color. Yellow in the open tube only indicates glucose degradation or oxidation. A yellow color in the closed tube (with mineral oil)
indicates the organism is fermentative rather than oxidative. Glucose fermenters produce acid (yellow color) in the open as well as the closed tube.

192

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Purpose

To study some biochemical reactions of glucose no nfer meriting bacteria

Materials

Blood agar plates

Nutrient agar plates

TSI slant

O-F glucose deeps

Oxidase reagent (di- or tetramethyl-p-phenylenediamine)

Dropper bottle with sterile mineral oil

Slant cultures of Pseudomonas aeruginosa, Acinetobacter baumannii, and Escherichia coli

Procedures

1. Prepare and examine a Gram-stained smear of each organism.

2. Inoculate a blood and nutrient agar plate with each organism. Streak the plate to obtain isolated colonies.

3. Inoculate each organism onto a TSI slant by stabbing the butt and streaking the slant.

4. Inoculate two tubes of O-F glucose with each organism by stabbing your inoculating loop to the bottom of the column of
medium. Overlay one of each set of two tubes with a one-half inch layer of sterile mineral oil.

5. Label all plates and tubes. Incubate them at 35°C for 24 hours.

6. Test each organism for the presence of the enzyme oxidase. The procedure is as follows.

a. Take a sterile petri dish containing a piece of filter paper.

b. Wet the paper with oxidase reagent.

c. With your inoculating loop, scrape up some growth from the tube labeled P. aeruginosa and rub it on a small area of the
wet filter paper. You should see an immediate positive oxidase reaction as the color of the area changes from light pink
to black-purple.

d. Repeat procedure 6c using growth from the tubes labeled A. baumannii and E. coli. Record the results in the table.

Results

1 . Examine the blood agar plate for hemolysis and the nutrient agar for pigment production

2. Read and record all biochemical reactions in the following table.

Gram -Stain Appearance

Butt
ofTSI

O-F Glucose

Oxidase

Complete
Hemolysis

Name of
Organism

Blood
Agar

Nutrient
Agar

Open

Closed

Diffusible
Green Pigment

P. aeruginosa

A. baumannii

E coli

EXPERIMENT 24.6 Rapid Methods for Bacterial Identification

The biochemical tests performed in the preceding sections are representative of standard methods for bacterial identification. In
some instances, it is possible to identify a bacterium correctly by using only a few tests, but more often an extensive biochemical
"profile" is needed. Because it is expensive and time consuming to make and keep a wide variety of culture media on hand, many
microbiology laboratories now use multimedia identification kits. These are commercially available and are especially useful for
identifying the common enteric bacteria. The use of such kits is customarily referred to as an application of "rapid methods," even
though they must be incubated overnight, as usual, before results can be read. Some of them, indeed, are rapid to inoculate, while
others permit complete identification within 24 hours.

The Enterobacteriaceae (Enteric Bacilli)

193

Morello-Mizer-Granato:

I. Diagnostic 9. Microbiology of the

Laboratory Manual and Microbiology in Action Intestinal Tract Companies, 2003

Workbook in Microbiology,
7/e

One type of kit, the Enterotube II (BD Diagnostic Systems), is a tube of 12 compartmentalized, conventional agar me-
dia that can be inoculated rapidly from a single isolated colony on an agar plate (see colorplate 36). The media provided indicate
whether the organism ferments the carbohydrates glucose, lactose, adonitol, arabinose, sorbitol, and dulcitol; produces H 2 S and/or
indole; produces acetylmethylcarbinol; deaminates phenylalanine; splits urea; decarboxylates lysine and/or ornithine; and can use
citrate when it is the sole source of carbon in the medium. The mechanism of the other tests provided by the Enterotube II has
been described in previous exercises or experiments (17, 18, 24.1).

The API System (bioMerieux Inc.) represents another type of kit for rapid identification of bacteria. This system pro-
vides, in a single strip, a series of 20 microtubules (miniature test tubes) of dehydrated media that are rehydrated with a saline sus-
pension of the bacterium to be identified (see colorplate 36). The tests included in the strip determine whether the organism fer-
ments glucose, mannitol, inositol, sorbitol, rhamnose, saccharose, melibiose, and amygdalin; produces indole and H 2 S; splits urea;
breaks down the amino acids tryptophan (same mechanism as phenylalanine), lysine, ornithine, and arginine; produces gelatinase;
forms acetylmethylcarbinol from glucose (VP test); and splits the compound o-nitrophenyl-p-D-galactopyranoside (ONPG). The
enzyme that acts on ONPG, called p-galactosidase, also is responsible for lactose fermentation. Some bacteria, however, are unable
to transport lactose into their cells for breakdown, although they possess p-galactosidase. In lactose broth, therefore, such bacteria
fail to display acid production, or do so only after a delay of days or weeks. By contrast, in ONPG medium their p-galactosidase
splits the substrate in a matter of hours, producing a bright yellow end product. Thus, ONPG can be used for the rapid demon-
stration of an organism's ability to ferment lactose.

A third type of kit, MicroScan (Dade Behring), consists of a multiwell panel containing dried antimicrobial agents for
susceptibility testing and biochemical reagents for identification of enteric and glucose nonfermenting gram-negative bacilli. The
wells of the panel are inoculated with a standardized suspension of an organism, incubated for 16 to 24 hours at 35°C, and then
read visually or in an automated instrument. In this way, antimicrobial susceptibility testing and organism identification are
achieved simultaneously. For enteric organisms, the biochemicals present in the wells test for fermentation of carbohydrates (glu-
cose, sucrose, sorbitol, raffinose, rhamnose, arabinose, inositol, adonitol, melibiose); production of urease, H 2 S, and indole; break-
down of lysine, arginine, ornithine, tryptophan, and esculin; andVP and ONPG reactions. In addition, tests for glucose nonfer-
menters include O-F glucose; ability to grow on minimal media containing citrate, malonate, tartrate, and acetamide; and ability
to reduce nitrate.

In order to permit more accurate bacterial identification, a computerized recognition system has been devised for each
of these three kits that assigns a number to each positive biochemical reaction. These figures are grouped together to give a nu-
merical code to each organism. Unknown bacteria can be identified by looking up the code number provided by their positive
reactions in an index book. Different strains of the same bacterium may vary in certain biochemical test results and thus have dif-
ferent code numbers. These variations can sometimes be used as epidemiological markers, in much the same way as phage typ-
ing is used to recognize different strains of Staphylococcus aureus.

A further advance is the use of automated instruments to read and interpret the results of both identification and an-
timicrobial susceptibility tests. The tests are set up in special, clear plastic multiwelled chambers containing a battery of biochem-
icals and different concentrations of several antimicrobial agents. The plastic chambers are then incubated in the instrument, which
periodically scans each biochemical well for changes in the color of pH indicators and scans the antimicrobial agent wells for the
presence of turbidity (signifying resistance). At the end of a specific time period, the computer in the instrument interprets all re-
actions and then the organism identification and its antimicrobial susceptibility results are printed out. Depending on the system
used, results can be obtained in as little as 2 to 6 hours.

In this experiment some rapid nonautomated methods for identification of bacteria will be demonstrated.

Purpose To observe the biochemical properties of bacteria grown in a multimedia system for rapid

identification

Materials Two Enterotubes, API strips, or MicroScan panels (as available) inoculated, respectively, with

Escherichia coli and Proteus vulgaris, and incubated for 24 hours. The instructor will demonstrate
methods for completing each test in the system.

194

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Results

1. If Entero tubes were inoculated, record the results observed for each organism in the blocks provided under the following
diagram.

Dextrose

Lysine

Ornithine

H 2 S/ indole

Adoo
itol

Lactose

Arabi-
nose

Sorbitol

Vooes-
Prosfcauer

Dulcitol
PAD

Urea

Citrate

Un inoculated
colors

Red/
orange

Yellow

Red/
orange

Red/

orange

Colorless

Green

Yellow

Green

Reacted
colors

Yellow

Purple

H 2 S - black
Indole-redf

Yellow

Bedt

Dulcitol-
yellow

PAD-brown

Pink

Blue

B. coll
(+or-)

H 2 S:

Ind.:

Dufc:
PAD:

P. vulgaris
1+ or -)

H 2 S:

Ind.:

Dulc:
PAD:

BD Diagnostic Systems.

If this wax overlay is separated from the dextrose agar surface, gas has been produced by the organism.
fRequires addition of indole or Voges-Proskauer reagents.

2. If API strips were inoculated, record the results observed for each organism in the blocks provided under the following
diagram.

Apr

/"\

20 E

/ ™\ s~\ *~\ r\ s~\

\^> \^s V^/ V
2 3 4 5 6

l v_>

r^ r\r\i

\^j \_j vy \y \~j

7 8 9 10 n

w w kj

17 18 19

E. coli

( t or — )

P. vulgaris

,_ -1 J^IU

"Code

Test

Negative Reaction

Positive Reaction

1 -ON PG

ONPG

Colorless

Yellow

2-ADH

Argimne dill

;ydrolase

Yellow

Red or orange

3-LDC

Lysine deccir

boxylase

Yellow

Red or orange

4-ODC

Ornishme decorbo*ylase

Yellow

Red or orange

5-CIT

Cirrore

Light green or yellow

Blue

6-H 7 S

Hydrogen si.

ilfide

No black deposit

Black deposit

7-URE

Urea

Yellow

Red or orange

8-TDA

Tryptophan ■

deaminase

Yellow

Brown-red

9-IND

Indole

Yellow

Red-ring

10- VP

Voges-Prosfc

auer

Colorless

Red wilhin 1 min.

H-GEL

Gelatin

No black pigment diffusion

Block pigment diffusion

12-GLU

Glucose

Blue Or blue-green

Yellow or gray

13- MAN

MannFrol

Blue or blue -green

Yellow

14— INO

Inositol

Blue or blue-green

Yellow

15-SOR

Sorbitol

Blue or blue-green

Yellow

16-RHA

Rhamnose

Blue or blue-green

Yellow

J7-SAC

Saccharose

Blue or blue green

Yellow

18-MEL

Melibiose

Blue or bfue-green

Yellow

19- AMY

Amygdolin

Blue or blue-green

Yellow

20— ARA

Arabinose

Blue or blue- green

Yellow

* 20 E - 20- test strip for enteric bacteria.

The Enterobacteriaceae (Enteric Bacilli)

195

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

3. If the MicroScan panel was used, complete the following table (note that tests included are for enterics only).

Well

Reagent Added

Positive Reaction

Negative
Reaction

E. coli
(+ or -)

P. vulgaris
(+ or -)

GLU

None

Strong yellow only

Orange to red

sue

None

Yellow to yellow/orange

Orange to red

SOR

RAF

RHA

ARA

INO

ADO

MEL

URE

None

Magenta to pink

Yellow, orange or light pink

H 2 S

None

Black precipitate or button

No blackening

IND

1 drop Kovac's reagent

Pink to red

Pale yellow to orange

LYS

None

Purple to gray

Yellow

ARG

ORN

TDA

1 drop 1 0% ferric chloride

Brown (any shade)

Yellow to orange

ESC

None

Light brown to black

Beige to colorless

1 drop 40% KOH, then 1 drop
alphanaphthol; wait 20 min

Red

Colorless

ONPG

None

Yellow

Colorless

Questions

1. What does the term IMViC mean?

2. Why is the IMViC useful in identifying Enterobacteriaceae? Are further biochemical tests necessary for complete
identification?

196

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

3. What diagnostic test differentiates Proteus and Providencia species from other Enterobacteriaceae'i

4. How is E. coli distinguished from P. vulgaris on MacConkey agar? On aTSI slant?

5. Instead ofTSI, why would a slant medium containing only dextrose and lactose (not sucrose) be preferable for detecting
Y. enterocolitica?

6. What procedures, other than biochemical, are used to identify microorganisms:

7. What is the purpose of the control test run in parallel with bacterial agglutination?

8. What is the value of serological identification of a microorganism as compared with culture identification?

The Enterobacteriaceae (Enteric Bacilli)

197

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

9. How does a streptococcal latex agglutination test (see Exercise 21.1) differ from the bacterial agglutination test that you
just performed? What information is derived from each?

10. Describe two mechanisms by which E. coli can produce disease

1 1 . What is meant by the term "enteric pathogen"?

12. Name a bacterial pathogen, other than one of the Enterobacteriaceae, that causes intestinal disease. Provide a flowchart
indicating how you would make the laboratory diagnosis.

13. Name a rapid method for the identification of Enterobacteriaceae, and discuss its value in comparison with the standard
methods you have used in Exercise 24.

14. Why is it important to differentiate glucose nonfermenters from Enterobacteriaceae':

198

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Name

Class

Date

Exercise

Clinical Specimens
from the Intestinal Tract

This exercise provides you with an opportunity to apply your knowledge of the Enterobacteriaceae
to making a laboratory diagnosis of an intestinal infection. In Experiment 25.1 you will prepare a
culture of your own feces and observe the normal intestinal flora on primary isolation plates. In
Experiment 25.2 you will be given a pure culture of one of the Enterobacteriaceae as an "unknown"
to be identified. Experiment 25.3 is an antimicrobial susceptibility test of your pure unknown cul-
ture. Here you should observe the differences in response of gram-negative enteric bacilli, as com-
pared with streptococci and staphylococci studied earlier, to the most clinically useful antimicro-
bial agents.

EXPERIMENT 25.1 Culturing a Fecal Sample

Purpose

To study some enteric bacilli normally found in the bowel

Materials

A stool specimen

Swab

Tubed sterile saline (0.5 ml)

EMB or MacConkey agar plate

Hektoen enteric (HE) agar plate

Blood agar plate

Procedures

1. Bring afresh sample of your feces to the laboratory session. Collect it in a clean container fitted with a tight lid (a screw-
cap jar; waxed, cardboard cup; or plastic vessel).

2. Using a swab, take up about 1 gm of feces (a piece the size of a large pea) and emulsify this in the tube of saline.

3. Inoculate the fecal suspension, with the swab, on a blood agar, EMB or MacConkey agar plate, and a Hektoen enteric
(HE) plate. Discard the swab in disinfectant solution. Streak for isolation, using a loop.

4. Incubate the plates at 35°C for 24 hours.

Results

1. Describe the appearance of growth on your plate cultures

Plate

Relative Number
of Colonies

Number of
Colony Types

Color of
Colonies

Hemolysis

Blood agar

EMB or MacConkey

Clinical Specimens from the Intestinal Tract

199

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

2. Interpret any difference in numbers of colonies on these plates

3. Interpret the color of colonies on EMB or MacConkey agar.

4. Interpret the appearance of colonies on the HE plate.

5. Were any lactose-negative colonies present? If so, name the genera to which they might belong and indicate the key
procedures that would identify each.

EXPERIMENT 25.2 Identification of an Unknown Enteric Organism

Purpose

To use the techniques you have learned to identify an unknown pure culture

Materials

Same as in Experiments 24.2 and 24.3 except that your assigned culture is numbered, not labeled

Procedures

1. Prepare a Gram stain of your culture.

2. Inoculate the culture on EMB or MacConkey, HE, and BiS plates, and streak for isolation

3. Inoculate all tubed media provided.

4. Incubate plates and tubes at 35°C for 24 hours.

Results

Read and record your results across one line of the following table. Also record all results obtained by your neighbors with dif-
ferent isolates. Using table 24.3-1, identify the unknown organisms.

200

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

Identification

Q
O

Urea

Motility

TSI

Bismuth
Sulfite

MacConkey

EMB

Gram-Stain

Reaction

and Morphology

Speciman
Number

Clinical Specimens from the Intestinal Tract

201

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

EXPERIMENT 25.3 Antimicrobial Susceptibility Test of an Enteric Organism

Purpose

To determine the antimicrobial susceptibility pattern of a gram-negative enteric bacillus

Materials

Nutrient agar plates (Mueller-Hinton if available)

Antimicrobial disks

Sterile swabs

Forceps

Beaker containing 70% alcohol

Pure plate or slant culture of unknown from Experiment 25.2

Tube of nutrient broth (5.0 ml)

Procedures

1. Using a sterile swab or inoculating loop, take some of the growth of the pure culture of your unknown organism and
emulsify it in 5.0 ml of nutrient broth to equal the turbidity of a McFarland 0.5 standard. (Discard the swab.)

2. Take another sterile swab, dip it in the broth suspension, drain off excess fluid against the inner wall of the tube.

3. Inoculate an agar plate as described in Experiment 15.1.

4. Follow steps 4 through 7 of Experiment 15.1.

5. Incubate the agar plate at 35 °C for 24 hours.

6. Examine plates and record results for each antimicrobial disk as S (susceptible), I (intermediate), or R (resistant).

7. Compare results with those obtained for the organism you tested in Experiment 15.1 and Experiment 23.3.

Results

Record your findings

Organism in

Exp. 15.1

Name:

Organism in

Exp. 23.3

Name:

Organism in

Exp. 25.3

Name:

Antimicrobial
Agent

202

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

1. Judging by the results of your tests, what group of antimicrobial agents appear to be indicated for the treatment of patients
with gram-negative infections? Gram-positive infections?

2. What conclusions can you draw as to the importance of testing each suspected bacterial pathogen for its antimicrobial
susceptibility?

Questions

1. What diseases are caused by Salmonella:

2. How do salmonellae enter the body? From what sources?

3. Name two selective media for the isolation of Salmonella and Shigella

4. Name some of the normal flora of the intestinal tract.

Clinical Specimens from the Intestinal Tract

203

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

9. Microbiology of the
Intestinal Tract

5. Why is it not necessary to collect a stool for culture in a sterile container?

6. How did you dispose of the fecal specimen after inoculating cultures? How should the cultures be disposed of? Why :

7. Were the organisms in your fecal culture predominantly lactose fermenters or nonfermenters? Does this have significance?

8. How do intestinal flora gain entry to the body?

9. Are the gram-negative enteric bacilli fastidious organisms? Would they survive well outside of the body? If so, what
significance would this have in their transmission?

204

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

Section

Microbiology of the Urinary
and Genital Tracts

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

Name

Class

Date

Exercise

Urine Culture Techniques

Normally, urine is sterile when excreted by the kidneys and stored in the urinary bladder. When
it is voided, however, urine becomes contaminated by the normal flora of the urethra and other
superficial urogenital membranes. The presence of bacteria in voided urine (bacteriuria), therefore,
does not always indicate urinary tract infection. To confirm infection, either the numbers of or-
ganisms present or the species isolated must be shown to be significant.

Active infection of the urinary tract arises in one of three ways: (1) microorganisms cir-
culating in the bloodstream from another site of infection are deposited and multiply in the kid-
neys to produce pyelonephritis by the hematogenous (originating from the blood) route; (2) bacteria
colonizing the external urogenital surfaces ascend the urethra to the bladder, causing cystitis (infec-
tion of the bladder only) or pyelonephritis by the ascending route; or (3) microorganisms, usually
from the urethra, find their way into the bladder on catheters or cystoscopes.

Cystitis is much more common than pyelonephritis. In the former case, most of the of-
fending organisms are opportunistic members of the fecal flora, including many you have studied
in Exercises 24 and 25, for example, E. coli (by far the most frequent cause of urinary tract infec-
tion), Klebsiella, Enterobacter, Serratia, and Proteus. Pseudomonas and enterococci are also often in-
criminated, especially in hospitalized patients with indwelling urinary catheters or those receiving
multiple antimicrobial agents. When these nonfastidious organisms reach the bladder, where active
host defense mechanisms (blood phagocytes and antibodies) are not readily available, they may
grow in the urine, producing acute bladder and urethral symptoms (urgency; frequent, painful uri-
nation) .

The blood that flows through the kidneys normally carries no microorganisms because
phagocytic white blood cells and serum antibodies are constantly at work eliminating any micro-
bial intruders that reach deep tissues. If these defense mechanisms are not working well or become
overwhelmed by extensive infectious processes in systemic tissues (uncontrolled tuberculosis or
yeast infections, staphylococcal or streptococcal abscesses), then the kidneys may become infected
by organisms carried to them via the bloodstream. More commonly, however, microorganisms ini-
tially colonizing the bladder ascend the ureters to infect the kidneys.

Laboratory diagnosis of urinary tract infections is made by culturing urine, usually ob-
tained either by catheterization or by voided collection. To obtain a catheterized urine specimen,
a sterile, polyurethane catheter tube is inserted into the urethra and passed up into the bladder. The
urine drains through the catheter tube and is collected in a sterile specimen cup. If it is obtained
properly, this sample represents urine obtained directly from the bladder. Catheterized urine is not
contaminated by normal urogenital flora, but the technique itself may introduce organisms into the
bladder. For this reason, catheters are seldom used to collect routinely ordered urine cultures. In
culturing voided specimens, however, the laboratory is faced with several problems. One is the
normal contamination of voided urine; another is the need for speed in initiating culture before
contaminants can multiply and distort results; and a third is the obligation to obtain and report re-
sults that reflect the clinical significances of the isolates adequately and accurately. Contamination
by hardy, nonfastidious organisms can mask the presence of other pathogens that are difficult to
cultivate on artificial media. Overgrowths in standing urine give a false picture of numbers. Either
situation can lead to laboratory results that fail to reveal the clinical problem, and possibly to the
mismanagement of the patient's case.

206

Diagnostic Microbiology in Action

Morello-Mizer-Granato:

I. Diagnostic 10. Microbiology of the

Laboratory Manual and Microbiology in Action Urinary and Genital Tracts Companies, 2003

Workbook in Microbiology,
7/e

To address these problems, the laboratory must insist on proper techniques for urine col-
lection and on prompt delivery of specimens for culture. When delay is unavoidable, urine speci-
mens should be refrigerated to prevent multiplication of any microorganisms they may contain.
Alternatively, a novel urine transport system that inhibits the growth of bacteria in urine without
refrigeration has been developed. The system consists of a sterile evacuated tube that contains boric
acid. Once the urine sample is collected, it is aspirated immediately into the evacuated tube. The
boric acid, which is nontoxic to bacteria, disperses throughout the urine and inhibits bacterial
growth in the sample for up to 12 hours at room temperature. Upon receipt in the laboratory, the
urine is examined for certain physical properties that can indicate infection, for example, color,
odor, turbidity, pH, mucus, blood, or pus. Uncontaminated urine is usually clear, but sometimes
may be clouded with precipitating salts. Urine containing actively multiplying bacteria is turbid. If
the patient has a urinary tract infection, the urine usually also contains many white blood cells. In
some instances, the mere recovery of a pathogenic bacterial species in urine (e.g., Salmonella,
Mycobacterium tuberculosis, or beta-hemolytic streptococci) is significant, regardless of numbers, and
the search for such organisms does not require quantitative culture technique. It is generally advis-
able, however, to culture urine quantitatively, and to report a "colony count" — that is, the num-
bers of colonies that grow in culture from a measured quantity of urine. If microorganisms are ac-
tively infecting the kidneys or bladder, they can usually be demonstrated in large numbers in urine
(in excess of 100,000 organisms per milliliter of urine). The recovery of greater than 100,000 bac-
teria per milliliter of urine in a properly collected and transported urine specimen is referred to as
significant bacteriuria because the presence of such large numbers of bacteria in urine correlates with
active infection of the bladder or kidney. On the other hand, normal urine that is merely contam-
inated in passage down the urethra contains very few organisms (100 to 1,000 per milliliter, not
more than 10,000), provided it is cultured soon after collection, before multiplication of contami-
nants can occur in the voided specimen awaiting culture. Some patients with symptoms of cystitis
have low counts of the causative agent in their urine and close collaboration between the labora-
tory and the physician is needed to accurately diagnose these infections.

Collection of voided urine for culture ("clean-catch" techniques)

Aseptic urine collection requires careful cleansing of the external urogenital surfaces, using gauze sponges
moistened with tap water and liquid soap.

For males, the procedure simply entails thorough sponging of the penis, discard of the first stream of
urine, and collection of a "midstream" portion in a sterile container fitted with a leak-proof closure. If the
outside of the container has been soiled with urine in the process, it must be wiped clean with disinfec-
tant before being handled further.

For females, extra care is necessary. All labial surfaces must be thoroughly cleansed, and the sterile con-
tainer must be held in such a way that it does not come in contact with the skin or clothing. Again, the
first stream of urine is discarded, and a midstream sample is collected. When the container has been tightly
closed, it is wiped clean with disinfectant.

Urine containers should never be filled to the brim. Closures should be double-checked to make cer-
tain they will not permit leakage during transport to the laboratory. If there is any delay (before or after de-
livery to the lab) in initiating culture, urine specimens must be refrigerated.

Urine Culture Techniques

207

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

EXPERIMENT 26.1

Examination and Qualitative Culture of Voided Urine

Purpose

To learn simple urine culture technique and to appreciate the value of aseptic urine collection

Materials

Sterile urine collection vessels

Liquid soap

Sterile gauze sponges

Sterile empty test tubes

Sterile 5.0-ml pipettes

Pipette bulb or other aspiration device

Litmus or pH papers

Blood agar plates

EMB or MacConkey plates

Two samples of your own urine

Procedures

1. Without special preparation of the urogenital surfaces, collect a specimen of your urine in a sterile container. Wipe the
outside of the container with disinfectant and close it tightly

2. Aseptically collect a second sample of your urine, following appropriate "clean-catch" techniques described in this exercise.

3. If possible, these specimens should be collected within one hour of the start of the laboratory session. If they are collected
earlier, refrigerate them.

4. Place about 1.0 ml of each urine sample in a small sterile test tube. Hold the tubes to the light and examine urine for
color and turbidity. Test the pH of each sample with litmus or pH paper. Note the odor of each. Record your observations
under Results.

5. Going back to the original urine container (the test tube sample is now contaminated by the pH test), pipette a large drop
of the "clean-catch" specimen onto a blood agar plate near the edge, and another drop onto an EMB or MacConkey plate.
Spread the drop a little with your loop and then streak for isolation.

6. Repeat step 5 with the casual urine collection.

7. Incubate all plates at 35°C for 24 hours.

8. Examine the incubated plates for amount of growth, types of colonies, and microscopic morphology of colony types.
Record observations under Results.

Results

1. Macroscopic appearance of urine.

Specimen

Color

Turbidity

Odor

Clots

Clean catch

Casual

208

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

2. Culture results.

Blood Agar

EMB or MacConkey

Speciman

Amount of
Growth

Types of
Colonies

Gram Stain and
Morphology

Amount of
Growth

Types of
Colonies

Gram Stain and
Morphology

Clean catch

Casual

Interpret any differences you observed in the amount of growth recovered from the two specimens.

Interpret differences in the amount of growth on blood agar and MacConkey plates for each specimen.

Interpret differences in the nature of growth obtained on blood agar and MacConkey plates for each specimen

Interpret any finding of "no growth."

EXPERIMENT 26.2

Quantitative Urine Culture

To distinguish contamination of urine by normal urogenital flora from urinary tract infection by the same organisms, it is usually
necessary to determine the numbers of organisms present per milliliter of specimen. In general, counts in excess of 100,000 or-
ganisms per milliliter are considered to indicate significant bacteriuria, if the collection technique was adequate and there was no de-
lay in culturing the specimen.

A quantitative culture is prepared by placing a measured volume of urine on an agar plate and counting the number of
colonies that develop after incubation. A calibrated loop that delivers 0.01 ml of sample is used to inoculate the plate. The num-
ber of colonies that appear from this l/100th-ml sample is multiplied by 100 to give the number per milliliter. For example, if
15 colonies are obtained from 0.01 ml, there are 15 X 100, or 1,500, organisms present in 1 ml (assuming each colony represents
one organism).

In this experiment, you will have a simulated urine specimen from a suspected case of urinary tract infection submit-
ted with a request for quantitative culture.

Urine Culture Techniques

209

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

Purpose

Materials

To learn quantitative culture technique and to see the effects of delay in culturing a voided urine
specimen

Nutrient agar plates

Calibrated loop (0.01 -ml delivery)

Sterile 5 -ml pipettes

Pipette bulb or other aspiration device

Sterile empty tubes

Simulated "clean-catch" urine from a clinical case of urinary tract infection

Procedures

1. With the calibrated loop, transfer 0.01 ml of the urine specimen to the center of a nutrient agar plate and streak across the
drop in several planes so that the specimen is distributed evenly across the plate.

2. Incubate the plate at 35°C for 24 hours.

3. Go back to the original urine specimen and measure about 2.0 ml into each of two sterile, empty test tubes. Place one of
these in the refrigerator, leave one at room temperature at your station, and place the original specimen in the incubator
for 24 hours.

4. Read your plates, count the colonies on each, and report the numbers of organisms per milliliter present in the urine
specimen.

5. Inspect the tubes of urine left in the refrigerator, in the incubator, and on your bench. Examine for turbidity and record
results.

Results

1. Record the number of colonies on the streaked nutrient agar plate

2. Calculate and record the number of organisms per milliliter of specimen and indicate whether this result is significant of
urinary tract infection.

210

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

3. Diagram your observations of turbidity in each tube of stored urine.

Refrigerated tube

Tube at room temperature

Incubated tube

What is your interpretation of the appearance of these tubes?

Questions

1 . What is bacteriuria? When is it significant?

2. How do microorganisms enter the urinary tract?

3. Why is aseptic urine collection important when cultures are ordered?

Urine Culture Techniques

211

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

4. List five bacteria that can cause urinary tract infection.

5. If you counted 20 colonies from a 0.01-ml inoculum of a 1:10 dilution of urine, how many organisms per milliliter of
specimen would you report? Is this number significant?

6. Is the urine colony count an appropriate indicator of the need for an antimicrobial susceptibility test of an organism
isolated from a urine culture? Why?

7. If you took a urine specimen for culture to the laboratory but found it temporarily closed, what would you do?

8. How would you instruct a female patient to collect her own urine specimen by the "clean-catch" technique? A male
patient?

9. What can you learn from visual inspection of a urine specimen?

10. Describe a urine transport system that allows the specimen to remain at room temperature for short time periods without
refrigeration.

212

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

Name

Class

Date

Exercise

Neisseria and Spirochetes

The sexually transmitted diseases are perhaps the most important infections acquired through the
urogenital tract, from the social as well as medical points of view. Three frequent infectious diseases
of this type are gonorrhea, syphilis, and chlamydial urethritis/cervicitis. All three infections are
caused by bacteria. Gonorrhea is caused by Neisseria gonorrhoeae; syphilis by Treponema pallidum, a
spirochete; and chlamydial infection by Chlamydia trachomatis. Neisseria gonorrhoeae can be grown on
special laboratory culture media, but chlamydiae are obligate intracellular parasites (once consid-
ered viruses, in part for this reason) and require special laboratory techniques for isolation (see
Exercise 30). Treponema pallidum, on the other hand, has not yet been grown in any laboratory cul-
ture system and is cultivated only in certain animals, such as the rabbit.

The bacterial groups to which these sexually transmitted agents belong contain other
pathogenic species associated with nonsexually transmitted disease, that is, infections acquired
through other entry portals. Still other species of Neisseria and Treponema are nonpathogenic, in-
cluding some that are frequent members of the normal flora of various mucous membrane surfaces,
particularly of the respiratory tract.

EXPERIMENT 27.1

Neisseria

The genus Neisseria contains two pathogenic species and a number of others that are commonly found in the normal flora of the
upper respiratory tract. The two medically important species are N gonorrhoeae, the agent of gonorrhea, and N meningitidis, an
agent of bacterial meningitis. All Neisseria are gram-negative diplococci, indistinguishable from each other in microscopic mor-
phology. The pathogenic species are obligate human parasites and quite fastidious in their growth requirements on artificial me-
dia. On primary isolation, they require an increased level of C0 2 during incubation at 35° C. The nonpathogenic commensals
of the upper respiratory tract are not fastidious and grow readily on simple nutrient media. Some of the respiratory flora, for ex-
ample, N subfiava and N.flavescens, have a yellow pigment, but most Neisseria produce colorless colonies. All Neisseria are oxidase
positive (see colorplate 13), which helps to distinguish them from other genera, but not from each other. Biochemically, the
Neisseria species are most readily identified on the basis of their differing patterns of carbohydrate degradation. The cultural dif-
ferentiation of a few Neisseria species, including the two pathogenic species, is shown in table 27.1-1. Recently, nucleic acid probe
tests and gene amplification assays for detecting N gonorrhoeae directly in patient specimens have become available (see Exercise
19). These tests can be completed within 2 to 4 hours and thus diagnostic results are available the day the specimen is taken.

Table 27.1-1 Differentiation of Some Neisseria species

Growth on

Name of

Enriched
Media

Simple
Nutrients

Yellow

Acid Production from *

Organism

Pathogenicity

(in CO2)

(in Air)

Pigment

Oxidase

N. gonorrhoeae

Gonorrhea

—

N. meningitidis

Meningitis

—

N. sicca

Normal flora

respiratory tract

N. flavescens

Normal flora

respiratory tract

—

G = glucose; M = maltose; S = sucrose

Neisseria and Spirochetes

213

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

Figure 27.1 Diagram of a microscopic field showing intracellular diplococci within polymorphonuclear cells. In cervical smears,

organisms of the normal flora may be numerous, but these are extracellular.

Extracellular
normal flora

Polymorphonuclear
leukocyte

Intracellular
diplococci

Isolation of the organism in culture is still considered the standard test, however, and is always used for potential medical-legal
cases such as suspected sexual abuse of children.

Gonorrhea usually begins as an acute, local infection of the genital tract. In the male, the urethra is initially involved and
exudes a purulent discharge. When the exudate is smeared on a microscope slide and Gram stained, it is seen to contain many
polymorphonuclear cells (phagocytic white blood cells), some of which contain intracellular, gram-negative diplococci (see color-
plate 4). In the female, acute infection usually begins in the cervix. Smears of the exudate show the same intracellular diplococci
as seen in males, except that there are often many more extraneous organisms present in specimens collected from females (see
fig. 27.1). Indeed, the abundant normal flora of the vagina may mask the presence of gonococci (N. gonorrhoeae) in smears or cul-
tures from females. For many women, initial infection may be asymptomatic. In them, gonococci cannot be demonstrated in
smears, and, therefore, culture or other detection techniques, such as nucleic acid probes, or gene amplification assays must be
used for laboratory diagnosis. Asymptomatic infection also occurs in a smaller percentage of infected males. Demonstration of N.
gonorrhoeae in culture or by a probe or gene amplification test provides definitive proof of infection. For culture, specimens may
be taken from the cervix, urethra, anal canal, or throat and one or more of these sites should be swabbed for culture when dis-
ease is suspected in women. For male patients, with a urethral discharge, Gram-stained smears of the exudate revealing typical
gram-negative intracellular diplococci are considered presumptively diagnostic, and cultures are generally not taken. Figure 27.2
outlines the recommendations of the Centers for Disease Control and Prevention, U.S. Public Health Service, regarding smears
and cultures from males and females, indicating all necessary steps to confirm the diagnosis of gonorrhea by these methods.

When swab cultures are taken, a suitable agar medium should be inoculated directly with the swab, the culture placed
in a candle jar or C0 2 incubator, and incubated at 35°C pending laboratory examination. Media enriched with hemoglobin and
other growth factors are in common use (modified Thayer-Martin and NYC medium are examples) . Antimicrobial agents are
added to suppress the normal flora of mucous membranes and to make these media more selective for gonococci. Following suit-
able incubation, laboratory identification of N. gonorrhoeae is made by the criteria shown in table 27.1-1 (see colorplate 37).

Meningitis, an inflammation of the meninges of the brain, may be caused by a variety of microbial agents. Chief among
them is Neisseria meningitidis, a gram-negative diplococcus. The usual portal of entry for these organisms is the upper respiratory
tract. They may colonize harmlessly there in the immune individual. When they enter susceptible hosts who cannot keep them
localized, they may cause invasive disease, either by finding their way into the bloodstream and then to deep tissues, or by direct
extension through the membranous bony structures posterior to the pharynx and sinuses. When they localize on the meninges
(the thin membranes that cover the brain), meningococci (N. meningitidis) induce an acute, purulent local infection that may have
far-reaching effects in the central nervous system. The laboratory diagnosis of N. meningitidis infections is made by recovering the

214

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

Figure 27.2 Recommended procedures for laboratory diagnosis of gonorrhea by smear and culture. Source: Centers for Disease

Control and Prevention, U.S. Public Health Service, Atlanta, Georgia, modified.

DIAGNOSTIC STEPS IN ACUTE GONORRHEA
C7 Gonococcal Infection

Frequency, dysuria, urethral discharge

Smear of exudate

Gram stain

Negative

Evidence of gram negative
intracellular diplococc!

Obtain culture specimens

from anterior urethra

(a[so anal canal if indicated)

Asymptomatic, or may have mild discharge

Gram stain not
recommended
for diagnosis

Obtain culture specimens
frornendocervical canal

and anal canal

Presumptive

positive

diagnosis

TREATMENT'

Inoculation on
M od if ied Thayer-Martin medium or transport system

Typical colonial morphology
Ox idc$e- positive colonies
Gmm-negafi ve di p locoed

'Obtain serological test for iyphilis..
Test For presence of concurrent
Chlamydia infection,

Presumptive positive culture diagnosis

Carbohydrote degradation reaction
m Fluorescent antibody technique

Definitive cultural diagnosis

organism in cultures of spinal fluid, blood, or the nasopharynx and identifying it by the criteria indicated in table 27.1-1. A latex
agglutination test is available for detecting meningococcal antigen in cerebrospinal fluid. This test is not preferred over a Gram-
stained smear of the fluid unless the patient has received antimicrobial therapy before the spinal tap is done.

In practical situations, it is important to remember that pathogenic Neisseria (gonococci and meningococci) are very
sensitive to environmental conditions outside the human body, especially temperature and atmosphere. They are easily destroyed
in specimens that are (1) delayed in transit to the laboratory, (2) kept at temperatures too far below or above 35°C, (3) heavily
contaminated by normal flora, or (4) not promptly provided with an increased C0 2 atmosphere (as in a candle jar). All specimens
to be cultured for pathogenic Neisseria should be brought promptly and directly to the microbiologist. In situations when delays in
specimen transport cannot be prevented, the JEMBEC system is recommended for use (see colorplate 38). This system consists
of a rectangular culture plate containing modified Thayer-Martin or NYC agar medium. After the clinical sample has been inoc-
ulated onto the medium surface, a C0 2 -generating tablet is placed in a well located on the plate, and the plate is placed in a zip-
lock plastic bag. Moisture in the culture medium activates the tablet, producing a C0 2 atmosphere in the bag. On arrival in the
laboratory, the JEMBEC culture plate is placed in a C0 2 incubator at 35°C and observed for growth as usual. As before, labora-
tory identification of suspected N gonorrhoeae is made according to the criteria in table 27.1-1. Use of this system improves re-
covery of N gonorrhoeae from clinical samples that are delayed in transport. For nonculture tests, transport is less critical because
nucleic acid (probe or gene amplification test) is more stable than are live organisms.

In the following experiment, you will have an opportunity to see the cultural and microscopic properties of some
Neisseria species.

Neisseria and Spirochetes

215

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

Purpose

To study the microscopic and cultural characteristics of Neisseria species

Materials

Sterile petri dish with filter paper

Oxidase reagent (dimethyl-p-phenylenediamine)

Phenol red broths (glucose, maltose, sucrose)

Candle jar, containing preincubated chocolate agar plate cultures of:

Neisseria sicca (pure culture)

Neisseria Jlavescens (pure culture)

A cervical exudate (simulated clinical specimen from a female giving a history of contact with a
positive male patient with gonorrhea)

Procedures

1. Examine the morphology of colonies on each plate and record their appearance, including pigmentation.

2. Test representative colonies on each pure culture plate for the enzyme oxidase following the procedure in Experiment 24.5,
step 6 (a-c).

3. Test representative colonies from the plated clinical specimen for their oxidase reactions. Using a marking pen or pencil,
mark the bottom of the plate under colonies that are oxidase positive. Record oxidase reactions in the table under Results.

4. Make a Gram stain of an oxidase-positive colony from each of the chocolate plates. Record the microscopic morphology
of each in the table under Results.

5. Inoculate one oxidase-positive colony from each chocolate agar plate into a glucose, maltose, and sucrose broth tube,
respectively.

6. From the plated clinical specimen, select one oxidase-negative colony type (if any) and inoculate it into a glucose, maltose,
and sucrose broth tube, respectively

7. Incubate all carbohydrate subcultures in a candle jar or C0 2 incubator at 35°C for 24 hours. Examine for evidence of acid
production. Record results.

Results

1 . Record your observations in the table that follows

Colonial
Morphology

Oxidase
(+ or -)

Gram-Stain
Morphology

Acid production*

Culture

N. sicca

N. flavescens

Cervical specimen

N. gonorrhoeae 1

N. meningitidis^

*G = glucose; M = maltose; S = sucrose
"•"To be completed from your reading.

2. Laboratory report of clinical specimen

216

Diagnostic Microbiology in Action

Morello-Mizer-Granato:

I. Diagnostic 10. Microbiology of the

Laboratory Manual and Microbiology in Action Urinary and Genital Tracts Companies, 2003

Workbook in Microbiology,
7/e

EXPERIMENT 27.2 Spirochetes

The spirochetes are slender, coiled organisms with a longitudinal axial filament that gives them motility. Seen in action, they are
long, flexible, and always actively spinning or undulating. Their cell walls are extremely thin and not readily stainable. In unstained
wet mounts they are too transparent to be seen by direct condenser light, but become quite visible by "dark-field" condenser il-
lumination. A special condenser lens is used to block the passage of direct light through the mount and to permit only the most
oblique rays to enter, at an angle that is nearly parallel to the slide. When viewed in such minimal light, the background of the
mount is very dark, almost black, but any particles in suspension are brightly illuminated because they catch and reflect light up-
ward through the objective lens. To stain spirochetes in fixed smears, stains containing metallic precipitates are used. Silver, for
example, can be precipitated out of solution and will coat spirochetes on the slide, giving them a black color when viewed by or-
dinary light microscopy (see colorplate 7) .

There are three major genera of spirochetes: Treponema, Borrelia, and Leptospira, each containing species associated with
human disease. Many of these organisms are obligate parasites that grow only in human or animal hosts, and others are difficult
to cultivate on artificial culture media. The leptospires are an exception, for they will grow in a special serum-enriched medium
or in embryonated eggs. The laboratory diagnosis of spirochetal diseases is made by microscopic demonstration of the organisms
in appropriate clinical specimens, when possible; in special cultures in the case of leptospirosis; or, most frequently, by serological
methods for detecting antibodies in the patient's serum (see Exercise 33).

Treponema. The most important member of this genus is Treponema pallidum, the agent of syphilis. The organism can be
demonstrated by dark-field examination of material from the primary lesion of the disease, called a chancre. Diagnostic serologi-
cal tests for syphilis are numerous. They are particularly valuable because syphilis can be a latent, silent infection, with few or no
obvious symptoms in its early stages. It is a chronic, progressive disease, however, and if unrecognized and untreated it can have
very serious consequences. Also, it is a sexually transmitted disease, highly communicable in its primary stage. Laboratory diag-
nosis of syphilis is, therefore, essential in its recognition, treatment, and control.

Nonpathogenic species of Treponema are frequent members of the normal flora of the mouth and gums, and sometimes
of the genital mucous membranes.

Borrelia. Borrelia species are pathogenic for humans and a wide variety of animals including rodents, birds, and cattle. They are
transmitted by the bites of arthropods. Two important species for humans are Borrelia recurrentis, the agent of relapsing fever, and
Borrelia burgdorferi, the agent of Lyme disease.

Relapsing fever is now primarily a tropical disease, and is transmitted by lice. As the name implies, the infection is char-
acterized by repeated episodes of fever with afebrile intervals in between. Diagnosis is made primarily by seeing the organisms in
the patient's blood either in an unstained preparation viewed by dark-field microscopy or in a smear stained with routine dyes
used in the hematology laboratory (e.g., Giemsa stain).

Lyme disease, transmitted by ticks, occurs in a number of countries. In the United States, it was first recognized in chil-
dren living in Lyme, Connecticut. Although once thought to be confined to the eastern part of the United States, this disease is
a growing problem in many parts of the country and throughout the world. The first sign of infection is a circular, rashlike lesion
(called erythema migrans) that begins at the site of the tick bite. This lesion may remain localized or spread to other body areas.
The rash may be accompanied by flulike or meningitis-like symptoms and, if untreated, many patients develop arthritis, chronic
skin lesions, and nervous system abnormalities after many weeks or even years. Because the signs and symptoms mimic those of
other infections, the correct diagnosis is often not suspected. Currently, diagnosis is best made by detecting antibodies against the
spirochete in the patient's serum but a history of tick bite provides an important clue.

Leptospira. This genus has been classified as having only one species, Leptospira interrogans, but molecular studies show several
species are included in this group. Several different serological strains are pathogenic for animals (dogs, rodents) and one is asso-
ciated with a human disease called icterohemorrhagia, or, more simply, leptospirosis. (It is also sometimes called Weil's disease.) The
spirochetes infect the liver and kidney, producing local hemorrhage and jaundice, hence the clinical term icterohemorrhagia. It
can also cause meningitis.

Neisseria and Spirochetes

217

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

The laboratory diagnosis of leptospirosis can sometimes be made by demonstrating the organism in dark-field prepa-
rations of blood or urine specimens (this spirochete is very tightly coiled, its ends are characteristically hooked, and it has a rapid,
lashing motility). Culture of such specimens in serum medium (Fletcher's) or animal inoculation can also lead to recovery of the
spirochete. Serological diagnosis can be made by testing the patient's serum for leptospiral antibodies.

In this experiment you will see the morphology of some spirochetes in prepared slides and demonstration material.

Purpose

Demonstration of important spirochetes

Materials

Prepared stained slides
Projection slides, if available

Procedures

Examine the prepared material. From your observations and/or reading, illustrate the microscopic morphology of each spiro
chetal senus:

Treponema

Borreiia

Leptospira

Questions

1. Can you distinguish between N. gonorrhoeae and N. meningitidis by Gram stain? Explain

2. What are intracellular gram-negative diplococci?

3. Why are selective media used for primary culture of specimens from the female urogenital tract?

218

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

4. Why is culture the standard method for diagnosing gonorrhea in possible medical-legal cases:

5. How are pathogenic Neisseria identified?

6. Name two common causes of bacterial meningitis.

7. When spinal fluid is collected for laboratory diagnosis of meningitis, how should it be transported?

8. Where are Neisseria found as normal flora? Treponema':

9. Name the etiologic agents of syphilis, leptospirosis, and Lyme disease.

10. Can T. pallidum be demonstrated by Gram stain? If not, what technique would you use to view this organism
microscopically?

11. What is the importance of the laboratory diagnosis of syphilis and gonorrhea?

Neisseria and Spirochetes

219

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

10. Microbiology of the
Urinary and Genital Tracts

12. Complete the following table.

Disease

Gram-Stain Reaction

Microscopic Morphology

Laboratory Diagnosis

Organism

Specimens

Method

N. gonorrhoeae

N. meningitidis

T. pallidum

B. burgdorferi

L interrogans

220

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Section

Microbial Pathogens
Requiring Special
Laboratory Techniques;
Serological Identification
of Patients' Antibodies

In Sections VIII through X, we have studied microbiological techniques for isolating
and identifying aerobic or facultatively anaerobic bacteria. In this section we shall see
how anaerobic bacteria are cultivated. The general techniques for identifying my-
cobacteria and microbial pathogens of other types (fungi, viruses, animal parasites)
are also described in these exercises. In some infections, evidence of the causative
microorganism is obtained by examining the patient's serum for specific antibodies
against the suspected pathogen. This is usually done when the microorganisms are
difficult to cultivate by routine methods or sufficient time has elapsed such that the or-
ganism is no longer recoverable in culture from patient specimens.

You should note that these techniques are quite varied. It is therefore im-
portant to remember that when specimens are ordered for laboratory diagnosis of mi-
crobial disease, the suspected clinical diagnosis should be stated on the request slip
or in the computer so that appropriate laboratory procedures can be instituted
promptly.

221

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Name

Class

Date

Exercise

Anaerobic Bacteria

Obligate (strict) anaerobic bacteria cannot grow in the presence of oxygen; therefore, in the labo-
ratory, media containing reducing agents are used to cultivate anaerobes. Agents such as sodium
thioglycollate and cystine remove much of the free oxygen present in liquid media. Cooked meat
broth is an excellent medium because it contains many reducing agents as well as nutrients. To en-
sure complete removal of oxygen from the culture environment, cultures are incubated in an
"anaerobic jar."

There are two types of anaerobic jars. One type has a lid fitted with an outlet through
which air can be evacuated by a vacuum pump and replaced by an oxygen-free gas. A catalyst in
the lid catalyzes the reduction and chemical removal of any traces of oxygen that may remain. The
other type also requires use of a catalyst in the jar. A foil envelope containing substances that gen-
erate hydrogen and C0 2 is placed in the jar with the cultures. The envelope is opened, and 10 ml
of tap water is pipetted into it. When the jar is closed (the lid is clamped down tightly), the hy-
drogen given off combines with oxygen, through the mediation of the catalyst, to form water. The
C0 2 helps to support growth of fastidious anaerobes. A second envelope placed in the jar with the
first contains a pad soaked with an oxidation-reduction indicator, for example, methylene blue.
When the pad is exposed, the color of the dye indicates whether or not oxygen is present in the
jar atmosphere; methylene blue is colorless in the absence of oxygen, blue in its presence. Figure
28.1 illustrates one brand of anaerobic jar (GasPak, B-D Diagnostic Systems) in use. Yet another
type of anaerobic system consists of a plastic pouch into which up to 4 petri plates can be placed
(fig. 28.2). An anaerobic gas-generating sachet is placed in the bag with the plates. The sachet ab-
sorbs oxygen from the pouch and generates C0 2 without the need for water. This type of system
is convenient when only small numbers of plates are to be incubated anaerobically. In addition, the
plates can be viewed for growth through the transparent plastic pouch without exposing the or-
ganisms to oxygen. Once sufficient growth is observed, the plates can be opened and the organ-
isms identified.

In recent years, improved techniques for anaerobic culture have been developed in re-
sponse to an increasing interest in the role of anaerobic bacteria as agents of human infections.
Anaerobes have been implicated in a wide variety of infections (see table 28.1) from which multi-
ple species of bacteria are recovered in culture, that is, mixed infections.

The ability of anaerobic organisms to grow in and damage body tissues depends on how
well the tissues are oxygenated. Any condition that reduces their oxygen supply, making them
anoxic (without oxygen), provides an excellent environment for the growth of anaerobes.
Impairment of local circulation because of a crushing wound, hematoma, or other compression
leads to tissue anoxia and sets the stage for contaminating anaerobes, if they are present, to cause
human infection.

Numerous genera of anaerobic bacteria have been recognized as pathogens, or poten-
tial pathogens, and almost all of them are members of the body's normal flora. The significance of
their isolation from a clinical specimen may be difficult to determine, and their pathogenicity is
not yet fully understood. Generally, they appear to be "pathogens of opportunity" — that is, given
the opportunity to gain access to tissue with impaired blood supply, they may grow and cause
enough tissue destruction to establish a local infection. The extent of local or systemic damage may

222

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Figure 28.1

A GasPak jar (BD Bioscience) for cultures to be incubated anaerobically. In this model, the tight-fitting lid contains a
catalyst. The large foil envelope has been opened to receive 10 ml of water delivered by a pipette. With the lid
clamped in place, hydrogen generated from substances in the large envelope combines with oxygen in the jar's
atmosphere. This combination is mediated by the catalyst and forms water, which condenses on the sides of the
jar. Carbon dioxide is also given off by the substances within the large envelope, contributing to the support of
growth of fastidious organisms. The smaller envelope has also been opened to expose a pad (arrow) soaked in
methylene blue, an indicator used to detect the presence or absence of oxygen. When first exposed, the pad was
blue in color. Now it is colorless, indicating that there is no free oxygen left in the jar, for the indicator dye loses its
color in the absence of oxygen. The jar now contains an anaerobic atmosphere and can be placed in the incubator.

Anaerobic Bacteria

223

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Figure 28.2 The anaerobe pouch is a convenient system to use when only small numbers of plates are to be incubated

anaerobically. The plates are put into the pouch with a gas-generating sachet and an oxygen-reduction indicator.

Table 28.1 Infections in which Anaerobic Bacteria Have Been Implicated

Body Area Involved

Type of Infection

Infections of the female genital tract

Endomyometritis
Salpingitis
Peritonitis
Pelvic abscess
Vaginal abscess
Vaginitis

Bartholin's abscess
Surgical wound infection

Intraabdominal infections

Peritonitis

Visceral abscess

Intraperitoneal abscess

Retroperitoneal abscess

Traumatic or surgical wound infection

Pleuropulmonary infections

Pneumonia
Lung abscess
Empyema

Miscellaneous infections

Osteomyelitis

Cellulitis

Arthritis

Abscesses

Brain abscess

Endocarditis

Meningitis

224

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Table 28.2 Some Important Genera of Anaerobic Bacteria

Basic Morphology

Genera

Pathogenicity

Bacilli

Gram-positive,
endosporeforming

Clostridium

C. perfringens — gas gangrene

C. tetani — tetanus

C. botulinum — botulism

Gram-positive, nonsporing

Actinomyces
Eubacterium
Propionibacterium

Bifidobacterium

Actinomycosis

Infections of female genital tract, intraabdominal infections, endocarditis

Difficult to assess; has had clinical significance in cultures of blood, bone
marrow, and spinal fluid

Occasionally isolated from blood; significance not established

Gram-negative, nonsporing

Bacteroides

Fusobacterium and Prevotella
Leptotrichia

Infections of female genital tract, intraabdominal and pleuropulmonary
infections; well-established as a pathogen

Same as Bacteroides but less frequent

Found in mixed infections in oral cavity or urogenital areas; significance not
established

Cocci

Gram-positive

Gram-negative

Peptostreptococcus
(anaerobic streptococci)

Veillonella

Infections of female genital tract, intraabdominal and pleuropulmonary
infections; often found with Bacteroides; established pathogen

Found in mixed anaerobic oral and pleuropulmonary infections; significance
not established

be related to a number of factors, including the properties of microorganism(s) involved, the ini-
tial site of infection, and the defense mechanisms of the infected individual. Because anaerobes are
part of the normal flora of the body, physicians may have difficulty assessing their importance in a
culture taken from an infected area. They must consider whether or not a given isolate may be
merely a contaminant from the local normal flora as they evaluate a patient's clinical condition. The
microbiologist can assist by offering directions for the proper collection and transport of specimens,
reporting on the predominance of microorganisms present in a culture, and assuring adequate iden-
tification of any significant anaerobes that may be isolated.

Some of the important genera of anaerobic bacteria are listed in table 28.2, most of
which are either gram-positive or gram-negative, nonsporing bacilli. With regard to pathogenic-
ity, however, that of certain Clostridium species, which are gram-positive endosporeforming bacilli, has
long been recognized and is best understood. Many species in the genus Clostridium are commonly
found in the intestinal tract of humans and animals, as well as in the soil, but three are of particu-
lar importance in human disease: C. perfringens, C. tetani, and C. botulinum. Each of these is associ-
ated with a different and characteristic type of clinical disease.

Clostridium perfringens is an agent of gas gangrene (sometimes in association with other
Clostridia). If they gain entry into wounded, anaerobic deep tissues, they can multiply rapidly, us-
ing tissue carbohydrates, liberating gas, and producing enzymes that cause additional destruction
that makes more nutrient available to the bacteria. This can quickly develop into a life- threatening
situation if not promptly treated by surgical debridement (removal of dead tissue) and aeration of
the injured tissue, and by antimicrobial agents. C. perfringens grows well on blood agar plates in an
anaerobic jar, showing characteristic double zones of hemolysis. Its enzymes attack the proteins and
carbohydrates of milk, producing "stormy fermentation" of a milk medium, with clotting and gas
formation. It ferments a number of carbohydrates with the production of acid and gas. Usually it
does not form endospores in ordinary culture media, nor does it do so when growing in tissues.

Anaerobic Bacteria

225

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Clostridium tetani is the agent of tetanus, or"lockjaw."When introduced into deep tissues,
this organism produces little or no local tissue damage, but secretes an exotoxin known as a neu-
rotoxin, which adversely affects nerve function. The neurotoxin is absorbed from the infected area
and travels along peripheral motor nerves to the spinal cord. Severe muscle spasm and convulsive
contraction of the involved muscles result. It is often difficult to make a laboratory diagnosis of this
disease because the site of injury may be closed and healed, with no apparent signs of infection, by
the time the symptoms of neurotoxicity begin. The organism is difficult to cultivate, but if isolated,
is identified by microscopic morphology and patterns of carbohydrate fermentation. The en-
dospore of C tetani is usually at one end of the bacillus (terminal). It is wider in diameter than the
vegetative bacillus, giving the cell the appearance of a "drumstick" or tennis racquet. The diagno-
sis is usually based on clinical signs and symptoms.

Clostridium botulinum produces an exotoxin that causes the deadly form of food poison-
ing called botulism. This is not an infectious disease, but a toxic disease. If the endospores of this soil
organism survive in processed foods that have been canned or vacuum packed, they may multiply
in the anaerobic conditions of the container, elaborating their potent exotoxin in the process of
growth. If the food is eaten without further cooking (which would destroy the toxin), the toxin is
absorbed and botulism results. The disease is difficult to diagnose bacteriologically, but the incrim-
inated food or the patient's blood can be tested to demonstrate the toxin's effect in mice, which
confirms the diagnosis.

In infant botulism, when endospores of the bacillus (endospores in honey have been im-
plicated in a few cases) are ingested by children under one year of age, the endospores germinate
in the child's intestinal tract in some instances, and the resulting vegetative cells produce toxin. This
type of botulism has been implicated in certain cases of sudden infant death syndrome (SIDS).

In this exercise we shall use species of Clostridium to illustrate the general principles of
anaerobic culture methods.

Purpose

To learn basic principles of anaerobic bacteriology

Materials

Anaerobe jar

Blood agar plates

Thioglycollate broth

Tubed skim milk

Phenol red broths (glucose, lactose)

Blood agar plate cultures of Clostridium perfringens and Clostridium histolyticum

Nutrient slant cultures of Pseudomonas aeruginosa and Staphylococcus epidermidis

Procedures

1 . Make a Gram stain of each Clostridium culture.

2. Select one of the Clostridium cultures and inoculate it on each of two blood agar plates. Label one plate "aerobic," the other

anaerobic.

3. Inoculate a tube of thioglycollate broth with C perfringens. Inoculate a second tube of this medium with P. aeruginosa, and a
third with S. epidermidis.

4. Inoculate a tube of milk with C perfringens, and a second milk tube with C histolyticum.

5. Inoculate each Clostridium culture into phenol red glucose and lactose, respectively.

6. Incubate the blood agar plate labeled "aerobic" in air at 35°C for 24 hours.

7. Place all other tubes and plates in the anaerobe jar. (The instructor will demonstrate the method for obtaining an
anaerobic atmosphere within the jar.) When it has been set up, the jar is incubated at 35°C for 24 hours. When working
with actual clinical specimens, the jar is often not opened until 48 hours, except when Clostridium is highly suspected.

226

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Results

1 . Indicate the Gram reaction of the Clostridium cultures and illustrate their microscopic morphology.

C. perfringens

C. histofyticum

What stain would you use to determine whether these organisms had produced endospores?

Would you expect to find endospores in the blood agar plate culture of a Clostridium':

Why:

2. Examine the thioglycollate broth cultures (do not shake them). On the following figures make a diagram of the
distribution of growth in each tube.

C. perfringens

S. epidermidis

P. aeruginosa

What is your interpretation of the appearance of these tubes:

Anaerobic Bacteria

227

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

3. Examine the blood agar plate cultures, milk tubes, and carbohydrate broths. Record your observations

Name of
Organism

Morphology on
Aerobic Plate

Morphology on
Anaerobic Plate

Hemolysis

Milk

Glucose

Lactose

C. perfringens

C. histolyticum

State your interpretation of the appearance of the milk cultures.

Questions

1. Define anaerobe, aerobe, and facultative anaerobe

2. Describe two methods for obtaining an anaerobic atmosphere for cultures.

3. Can a strict aerobe be distinguished from an anaerobe in thioglycollate broth? If so, how?

4. If you wanted to culture a wound specimen but couldn't find an anaerobe jar, would a candle jar serve as a suitable
substitute? Why?

5. What is a bacterial endospore? Why should it have medical importance:

228

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

6. What is an exotoxin? What is a neurotoxin?

7. Describe two important properties of C. petfringens in culture.

8. Name three diseases caused by anaerobic bacteria.

9. When a specimen from a wound of a patient suspected of having gas gangrene is sent to the laboratory, would an
immediate Gram-stain report be of clinical value? Why?

10. If a patient on a surgical unit develops gas gangrene, what hospital precautions, if any, should be taken? Why?

11. What is an opportunistic pathogen (pathogen of opportunity):

12. Is botulism considered to be an infectious disease? Why?

13. Why should a cook follow home-canning instructions carefully:

Anaerobic Bacteria

229

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Name

Class

Date

Exercise

Mycobacteria

The genus Mycobacterium contains many species, a number of which can cause human disease. A
few are saprophytic organisms, found in soil and water, and also on human skin and mucous mem-
branes. The two important pathogens in this group are Mycobacterium tuberculosis, the agent of tu-
berculosis, and Mycobacterium leprae, the cause of Hansen disease (leprosy). However, Mycobacterium
kansasii and the Mycobacterium avium complex (see table 29.1) cause disease in persons with chronic
lung disease and are being seen more frequently as opportunistic pathogens in patients with
leukemia and acquired immunodeficiency syndrome (AIDS). Table 29.1 summarizes some of the
mycobacteria that are human pathogens according to the type of disease that they may cause.
Species of mycobacteria that are commensals and not normally associated with human disease are
listed as well.

Laboratory diagnosis of tuberculosis and other mycobacterial infection is made by iden-
tifying the organisms in acid-fast smears and in cultures of clinical specimens from any area of the
body where infection may be localized. In pulmonary disease, sputum specimens and gastric wash-
ings are appropriate, but if the disease is disseminated, the organisms may be found in a variety of
areas. Urine, blood, spinal fluid, lymph nodes, or bone marrow may be of diagnostic value, espe-
cially in immunocompromised patients. Any specimen collected for identification of mycobacte-

Table 29.1 Mycobacteria in Infectious Disease

Disease

Species

Host(s)

Route of Entry

Tuberculosis

Mycobacterium tuberculosis
M. bovis

Human

Cattle and human

Respiratory
Alimentary (milk)

Pulmonary disease resembling
tuberculosis (mycobacterioses)

M. avium*
M. intracellulare*
M. kansasii
M. szulgai
M. xenopi

Fowl and human
Human "X
Human I

Human |

Human J

Respiratory

Environmental contacts? (water and soil)

Lymphadenitis (usually cervical)

M. tuberculosis
M. scrofulaceum
M. avium complex

Human
Human "\
Fowl >
Human )

Respiratory

Environmental contacts? (water and soil)

Skin ulcerations

M. ulcerans
M. marinum

Human

Fish and human

Environmental contacts?
Aquatic contacts

Soft tissue

M. fortuitum
M. chelonae

Human 1
Human J

Environmental contacts?

Hansen disease (leprosy)

M. leprae

Human

Respiratory

Saprophytes: water, soil; human skin
and mucosae

M. smegmatis
M. phlei
M. gordonae

Mycobacterium avium and M. intracellulare are so closely related that they are often identified as the Mycobacterium avium complex.

Mycobacteria

231

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

ria must be handled with particular caution and strict asepsis. These organisms, with their thick
waxy coats, can survive for long periods even under adverse environmental conditions. They can
remain viable for long periods in dried sputum or other infectious discharges and they are also re-
sistant to many disinfectants. Choosing a suitable disinfectant for chemical destruction of tubercle
bacilli requires careful consideration.

Clinical samples such as sputum must be digested and concentrated before they are cul-
tured for mycobacteria. During the digestion process, the thick, viscous sputum is liquefied so that
any mycobacteria present, particularly if present in low number, are distributed evenly throughout
the specimen. After digestion, the sample is centrifuged at high speed to concentrate the my-
cobacteria at the bottom of the centrifuge tube. The supernatant fluid is discarded into an appro-
priate disinfectant, and an acid-fast-stained smear of a portion of the centrifuged pellet is prepared
and examined microscopically. Another portion is cultured on special mycobacterial culture me-
dia. The digestion and concentration steps greatly improve the microscopic detection of mycobac-
teria in clinical specimens and their recovery in culture.

The Kinyoun stain (see Exercise 6) is commonly used to stain acid-fast bacilli. The or-
ganisms stain red against a blue background, whereas non-acid-fast organisms are blue (see color-
plate 9). Tubercle bacilli are slender rods, often beaded in appearance. Another stain, using the flu-
orescent dyes auramine and rhodamine, permits rapid detection of the organisms as bright objects
against a dark background (see colorplate 9). This technique is used in many laboratories today be-
cause the fluorescing organisms are easier to detect than bacilli stained with the acid-fast method.
Thus, the preparation can be scanned at X400 magnification rather than X 1,000.

Most mycobacteria do not grow on conventional laboratory media such as chocolate or
blood agar plates. Therefore, special solid media containing complex nutrients, such as eggs, po-
tato, and serum, are used for culture. Lowenstein-Jensen medium is a solid egg medium prepared
as a slant and is one of several in common use (see colorplate 39). Broth media are also available.

Tubercle bacilli and most other mycobacteria grow very slowly. At least several days, and
up to 4 to 8 weeks for M. tuberculosis, are required for visible growth to appear. They are aerobic
organisms, but their growth can be accelerated to some extent with increased atmospheric C0 2 .
Automated instruments that detect the C0 2 released by mycobacteria are used in many laborato-
ries and permit detection before visible growth is apparent. The C0 2 is released when mycobac-
teria metabolize special substrates present in broth culture media.

M. leprae (also known as Hansen bacillus) cannot be cultivated on laboratory media.
Laboratory diagnosis of Hansen disease is based only on direct microscopic examination of acid-
fast smears of material from the lesions.

EXPERIMENT 29.1 Microscopic Morphology of Mycobacterium tuberculosis

Purpose

To study M. tuberculosis in smears

Materials

Prepared acid-fast stains

232

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Procedures

Examine the prepared slides under oil immersion. Make a colored drawing of tubercle bacilli as you see them

State your interpretation of the term "acid-fast."

EXPERIMENT 29.2 Culturing a Sputum Specimen for Mycobacteria

Purpose

To study mycobacteria in culture

Materials

Lowenstein-Jensen slants

Simulated sputum culture (predigested and concentrated)

Procedures

1. Prepare an acid-fast stain directly from the sputum specimen (review Exercise 6). Read and record observations

2. Inoculate the specimen on Lowenstein-Jensen medium and incubate at 35°C until growth appears.

3. Examine for visible growth and record appearance.

Results

1 . Diagram observations of the stained smear.

Mycobacteria

233

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

2. Describe the growth on Lowenstein-Jensen medium. How many days before growth appeared?

Questions

1. Name two saprophytic, commensal species of Mycobacterium

2. What is Hansen bacillus?

3. Explain why sputum is "digested" and concentrated before culture

4. Why are tubercle bacilli acid- fast?

5. Why are tubercle bacilli difficult to destroy by chemical disinfection?

234

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

6. What special precautions are necessary for collecting and handling specimens from tuberculosis patients:

7. Is the presence of acid-fast bacilli in a sputum sufficient evidence of tuberculosis? Why:

8. Why do some culture reports for pathogenic mycobacteria require 6 or more weeks?

9. If you were caring for a patient with tuberculosis, what type of isolation precautions would you use?

10. In the United States, an acid- fast isolate from a patient with AIDS is most likely to be which mycobacterial species?

Mycobacteria

235

Morello-Mizer-Granato:

I. Diagnostic 11. Microbial Pathogens

Laboratory Manual and Microbiology in Action Requiring Special Companies, 2003

Workbook in Microbiology, Laboratory Techniques
7/e

Name

Class Date

Exercise Si ) Mycoplasmas, Rickettsiae, Chlamydiae,

Viruses, and Prions

Mycoplasmas, rickettsiae, and chlamydiae are classified as true bacteria, but they are extremely
small, and for various reasons cannot be cultured by ordinary bacteriologic methods. The viruses
are the smallest of all microorganisms and are classified separately The techniques that have devel-
oped over many years for propagating and studying viruses have provided an understanding of their
nature and pathogenicity. The electron microscope, together with elegantly precise biochemical,
physical, molecular, and immunologic procedures, has revealed the structure of viruses and their
role in disease at the cellular level. Prions are proteinaceous infectious particles that cause so-called
slow viral infections because they take many years to develop. Prions are smaller in size than viruses
and are believed to contain no nucleic acids. The means by which such agents can cause disease re-
mains unknown, but ongoing molecular studies may unravel the answer.

In this exercise we shall review the nature and pathogenicity of these microorganisms.

Purpose To learn the role of mycoplasmas, rickettsiae, chlamydiae, viruses, and prions in disease and to

review some laboratory procedures for recognizing them

Materials Audiovisual or reading materials illustrating each group

Diagram of the electron microscope

Procedures

Students will not perform laboratory procedures, but should come to class prepared by as
signed reading to discuss the laboratory diagnosis of diseases caused by these agents.

Following is a brief summary of each group.

Mycoplasmas

The mycoplasmas, previously called "pleuropneumonia-like organisms" (PPLO), were first
known as etiologic agents of bovine pleuropneumonia. Several species are now recognized,
including three that are agents of human infectious disease.

Mycoplasma pneumoniae is the causative organism of "primary atypical pneumonia."
The term implies that the disease is unlike bacterial pneumonias and does not represent a
secondary infection by an opportunistic invader, but has a single primary agent. Clinically,
mycoplasmal pneumonia resembles an influenza-like illness.

Mycoplasma hominis may be found on healthy mucous membranes, but is also asso-
ciated with some cases of postpartum fever, pyelonephritis, wound infection, and arthritis.

Ureaplasmas are strains of mycoplasma that produce very tiny colonies and were,
for this reason, once called "T-mycoplasmas ."They have been renamed in recognition of their
unique possession of the enzyme urease. These mycoplasmas, like M. hominis, are normally
found on mucosal surfaces, but have sometimes been associated with urogenital and neona-
tal infections and female infertility.

Mycoplasmas are extremely pleomorphic (varied in size and shape). They are very
thin and plastic because they lack cell walls. For this reason, unlike other bacteria, they can

236

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

pass through bacterial filters, they do not stain with ordinary dyes, and they are resistant to
antimicrobial agents (such as penicillin) that act by interfering with cell wall synthesis.

Laboratory Diagnosis

These organisms can be cultivated on enriched culture media, but on agar media their
colonies can be clearly seen only with magnifying lenses. They do not heap on the surface,
but extend into and through the agar from the point of inoculation.

Specimens for laboratory diagnosis include sputum, urethral or cervical discharge,
synovial fluid, or any material from the site of suspected infection. Cultures require 3 to 10
days of incubation at 35°C. Serological methods are also available for detecting mycoplasmal
antibodies in the patient's serum.

Rickettsiae

The rickettsiae are very small bacteria that survive only when growing and multiplying in-
tracellularly in living cells. In this respect they are like viruses; that is, they are obligate par-
asites. They have a cell wall similar to that of other bacteria, which can be stained with spe-
cial stains so that their morphology can be studied with the light microscope.

Certain arthropods, such as ticks, mites, or lice, are the natural reservoirs of rick-
ettsiae. They are transmitted to humans by the bite of such insects, by rubbing infected in-
sect feces into skin (for example, after a bite), or by inhaling aerosols contaminated by in-
fected insects. The most important rickettsial pathogens are Rickettsia prowazekii (epidemic
typhus), Rickettsia rickettsii (Rocky Mountain spotted fever), Rickettsia akari (rickettsialpox),
and Coxiella burnetii (Q fever).

Ehrlichia species are classified in the same family as rickettsiae. They are recently
recognized agents of several diseases, especially in Japan and the United States. Some
ehrlichiae are transmitted by ticks. Ehrlichiae sennetsu, common in Japan, produces a dis-
ease resembling infectious mononucleosis. Ehrlichia chaffeensis, a tick-borne disease in the
United States, produces symptoms similar to Rocky Mountain spotted fever, but without
the rash.

Following is a list of the major groups of the rickettsial family and the diseases they cause.

I. Typhus group

A. Epidemic typhus

B. Murine typhus

C. Scrub typhus (tsutsugamushi fever)

II. Spotted fever group

A. Rocky Mountain spotted fever

B. Rickettsialpox

C. Boutonneuse fever

III. Coxiella (The genus Coxiella is undergoing reclassification and may be removed from the rickettsial family.)
A. Q fever

IV. Ehrlichiae

A. Ehrlichiosis

B. Sennetsu fever (Japan)

Laboratory Diagnosis

In the laboratory, rickettsiae can be propagated only in cell culture or in intact animals, such
as chick embryos, mice, and guinea pigs. They are identified by their growth characteristics,

Mycoplasmas, Rickettsiae, Chlamydiae, Viruses, and Prions

237

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

by the type of injury they create in cells or animals, and by serological means. Serological di-
agnosis of rickettsial diseases can also be made by identifying patients' serum antibodies.

Chlamydiae

The chlamydiae are intermediate in size between rickettsiae and the largest viruses, which
they were once thought to be. They are now recognized as true bacteria because of the struc-
ture and composition of their cell walls (the term chlamydia means "thick- walled") and be-
cause their basic reproductive mechanism is of the bacterial type. They are nonmotile, coc-
coid organisms that, like the rickettsiae, are obligate parasites. Their intracellular life is
characterized by a unique developmental cycle. When first taken up by a parasitized cell, the
chlamydial organism becomes enveloped within a membranous vacuole. This "elementary
body" then reorganizes and enlarges, becoming what is called a "reticulate body." The latter,
still within its vacuole, then begins to divide repeatedly by binary fission, producing a mass
of small particles termed an "inclusion body" (see colorplate 40). Eventually the particles are
freed from the cell, and each of the new small particles (again called elementary bodies) may
then infect another cell, beginning the cycle again.

Three chlamydial species are responsible for human disease. Chlamydia psittaci
causes ornithosis, or psittacosis ("parrot" fever), a pneumonia transmitted to humans usually
by certain pet birds. Chlamydia trachomatis currently is the most common bacterial agent of
sexually transmitted disease; the infection often is referred to as nongonococcal urethritis. In
addition, this species causes a less common sexually transmitted disease, lymphogranuloma
venereum; infant pneumonitis; and trachoma, a severe eye disease that can lead to blindness.
Chlamydia pneumoniae produces a variety of respiratory diseases, especially in young adults.
Because of difficulties growing it, the organism was identified only during the 1980s.
Undoubtedly it has been causing disease for many years, if not for centuries.

Laboratory Diagnosis

Chlamydia psittaci and Chlamydia pneumoniae are almost always diagnosed by serological
means. Cell culture methods are available for growing Chlamydia psittaci, but isolating this or-
ganism in culture is hazardous and performed only in laboratories with specialized contain-
ment facilities.

Cell culture methods are also available for isolating Chlamydia trachomatis, but they
are cumbersome, performed only in specialized laboratories, and generally reserved for cases
of suspected child abuse. The development of nucleic acid probe and amplification assays has
greatly aided diagnosis of this common sexually transmitted disease pathogen. In addition to
genital specimens, eye, urine, and infant respiratory specimens may be tested, depending on
the system used.

Viruses

Viruses are infectious agents that reproduce only within intact living cells. They are so small
and simple in structure, and so limited in almost all activity, that they challenge our defini-
tions of life and of living organisms. The smallest are comparable in size to a large molecule.
Structurally, they are not true cells but subunits, containing only an essential nucleic acid
wrapped in a protein coat, or capsid. The electron microscope reveals that they have various
shapes, some being merely globular, others rodlike, and some with a head and tailpiece re-
sembling a tadpole. When viruses are purified, their crystalline forms may have distinctive
patterns. An intact, noncrystallized virus particle is called a virion.

238

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Table 30.1 Clinical and Epidemiological Classification of Some Clinically Important Viruses

Respiratory Viruses

Herpesviruses

Arboviruses (Arthropod-borne)

Influenza virus

(Dermotropic and viscerotropic)

(Viscerotropic)

Parainfluenza viruses

Varicella-zoster virus (chicken pox, shingles)

Yellow fever virus

Adenoviruses

Herpes simplex virus, types 1 and 2

Dengue fever virus

Rhinoviruses

Epstein-Barr virus (infectious mononucleosis)

Colorado tick fever virus

Respiratory syncytial (RS) virus

Cytomegalovirus

Sandfly fever virus

Mumps virus

Exanthem Viruses

(Neurotropic)

Hantaviruses

(Dermotropic and viscerotropic)

Eastern equine encephalitis virus
Western equine encephalitis virus

Enteric Viruses

Rubeola virus (measles)

St. Louis encephalitis virus

Polio virus

Rubella virus (german measles)

Japanese B encephalitis virus

Coxsackie viruses

CNS Virus

ECHO viruses

(Neurotropic)

Other

Hepatitis A virus (infectious)

\ i /

Rabies virus

(Transmitted by blood)

Rotavirus

Hepatitis B virus (serum)
Human immunodeficiency viruses

Poxviruses

Ebola virus

(Dermotropic)

Variola virus (smallpox)

Cowpox virus

Vaccinia virus

There are many ways to classify viruses: on the basis of their chemical composi-
tion, morphology, and similar measurable properties. From the clinical point of view, it seems
practical to classify them on the basis of the type of disease they produce. This, in turn, is
based on their differing affinities for particular types of host cells or tissues. Thus, we speak
of neurotropic viruses as those that have a specific affinity for cells of the nervous system.
Dermotropic viruses affect the epithelial cells of the skin, and viscerotropic viruses parasitize in-
ternal organs, notably the liver. Enteric viruses are so-called because they enter the body
through the gastrointestinal tract. Their primary disease effects are exerted elsewhere, how-
ever, when they disseminate from this site of initial entry. The term arbovirus is used for those
viruses that exist in arthropod reservoirs and are transmitted to humans by their biting insect
hosts (i.e., they are arthropodbome) . Still other viruses, such as the human immunodeficiency
virus, have effects on multiple body systems. In table 30.1, some important viruses are
grouped in a clinical and epidemiological classification that reflects either their route of trans-
mission or the type of disease they cause in humans.

Laboratory Diagnosis

A variety of methods may be used for the laboratory diagnosis of viral infections. These in-
clude isolation of the virus in cell culture; direct examination of clinical material to detect
viral particles, antigens, or nucleic acids; cytohistological (cellular) evidence of infection; and
serological assays to assess an individual's antibody response to infection. No single labora-
tory approach is completely reliable in diagnosing all viral infections. Therefore, the use of
any one or a combination of these methods may be needed to establish a specific viral etiol-
ogy of disease. The choice of method may be determined by several factors, including knowl-

Mycoplasmas, Rickettsiae, Chlamydiae, Viruses, and Prions

239

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Figure 30.1 Cell culture of adenovirus. The uninoculated cells on the left form an even monolayer (one cell thick) in the culture

tube. Once the cells are infected with virus (right), they undergo a characteristic cytopathic effect, becoming
enlarged, granular in appearance, and aggregated into irregular clusters.

edge of the pathogenesis of the suspected viral agent, the stage of the illness, and the avail-
ability of various laboratory methods for the particular viral infection suspected.

Cell Culture

Viruses are obligate, intracellular parasites that require metabolically active cells for their
replication. Most can be cultivated in mammalian cell cultures, embryonated chicken eggs,
or laboratory animals, such as mice. In many clinical laboratories, cell culture has supplanted
the other systems for isolating most viruses. Unfortunately, a single, universal cell culture
suitable for the recovery of all viruses is not available. Because of this, several different cell
culture lines are used to optimize recovery of the viral agents most common in human dis-
ease. These include Rhesus monkey kidney cells, rabbit kidney cells, human embryonic lung
cells (called WI-3 8 cells), and human epidermoid carcinoma cells of the larynx or lung, called
HEp-2 or A549 cells, respectively. These cell lines are cultivated in glass or plastic tubes or
flasks using specially formulated cell culture media. The cells adhere to the glass surface and
produce a confluent, single layer of growth known as a cell monolayer (see fig. 30.1).

The ability of a virus to infect a particular cell line depends on the presence of
specific receptor sites on the cell membrane to which the virus can attach. Attachment is fol-
lowed by virus entry into the cell. The presence or absence of certain receptor sites on the
cell membrane surface determines the susceptibility or sensitivity of that particular cell line
to viral infection.

Once a virus infects a mammalian cell, it may induce certain morphologic
changes in the typical appearance of the cells, known as a cytopathic effect or CPE (see fig.
30.1). Some types of CPE caused by different viruses include generalized cell rounding, syn-
cytia formation (fusion of cells), and plaque formation (lysis of cells). Importantly, the type
of cell line infected and resultant CPE produced are extremely useful in providing the iden-
tity of the particular virus isolated. The CPE may take from 1 to 25 days to develop, de-
pending on the virus isolated.

Certain groups of viruses, such as the influenza and parainfluenza viruses, may not
produce CPE when they infect cell cultures, and thus, cell monolayers infected with them ap-
pear normal morphologically. A unique property of these viruses, however, is their ability to

240

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

produce hemagglutinins, which are proteins projecting from the envelopes of the viruses and
present in the membranes of infected cells. Hemagglutinins have the ability to adhere to ery-
throcytes in a process known as hemadsorption, which is used to screen certain cell cultures
for the presence of influenza and parainfluenza viruses. This test is performed by overlaying
the cell monolayer with a suspension of guinea pig erythrocytes, then examining for the pres-
ence of hemadsorption after 30 minutes. Adherence of the guinea pig erythrocytes to the cell
monolayer is regarded as a positive test. Influenza and parainfluenza viruses are the most com-
monly isolated hemadsorbing viruses, but mumps virus also gives a positive reaction.

Despite the availability of a large number of different cell culture lines, a number
of clinically important viruses cannot be grown using these conventional methods. The
Epstein-Barr virus (the cause of infectious mononucleosis) and human immunodeficiency
virus (the cause of AIDS) require human white blood cells for growth. Other viruses, such
as some coxsackie A viruses, rabies virus, and arboviruses are best isolated in mice. Because
of the highly specialized nature of these procedures, such methods are generally performed
only in reference laboratories. In addition, some viruses (e.g., hepatitis viruses and rotavirus)
cannot be cultivated at all. Alternative procedures such as electron microscopy, antigen de-
tection assays, or serology are used for the diagnosis of these viral infections.

Direct Specimen Assays

Immunologic assays, such as immunofluorescence and enzyme immunoassay, are used to de-
tect viral antigens, and nucleic acid amplification techniques are used to detect viral nucleic
acids directly in patient specimens (see Exercise 19). Antigen detection assays are available for
a number of different viruses including respiratory syncytial virus, herpes simplex virus, in-
fluenza A and B viruses, rotavirus, and adenovirus. Currently, nucleic acid amplification as-
says are limited to the detection of human papillomavirus although assays for quantifying
blood levels of viruses such as HIV are available. If viral products are detected, the laboratory
diagnosis of infection is established and the need to perform viral culture is eliminated.
Results are often available within 10 to 60 minutes.

Cytohistologica I Examina tion

The earliest nonculture laboratory method used for viral diagnosis was screening for charac-
teristic changes in infected human cells and tissues. Examination of cell smears or tissue sec-
tions stained with special tissue stains may reveal characteristic viral inclusion bodies that rep-
resent "footprints" of viral replication and are suggestive of certain viral infections. However,
the diagnostic value of such an approach is limited because sensitivity is low (50 to 70%)
compared with other available methods. The major application of this method is for the di-
agnosis of infections caused by viruses such as molluscum contagiosum (the cause of genital
warts), which are not culturable. However, a gene amplification method is now commer-
cially available for detecting these viruses in clinical samples.

Electron Microscopy

Electron microscopy is a powerful tool for the study of viral morphology and size but is of
limited availability in most diagnostic laboratories. Direct electron microscopy also requires
specimens containing high titers (^10 per ml) of viral particles. The major diagnostic ap-
plication of electron microscopy is for the detection of certain nonculturable viruses, partic-
ularly those that cause gastroenteritis (e.g., caliciviruses, astroviruses, and rotavirus).

Serology

Serological tests to identify patient's antibodies are described in more detail in Exercise 33.
A variety of serological tests, however, are available for the diagnosis of many viral infections.

Mycoplasmas, Rickettsiae, Chlamydiae, Viruses, and Prions

241

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

These involve the examination of two serum specimens (acute and convalescent sera spaced
at least 2—4 weeks apart) to detect a significant change in antibody titer. Serology is extremely
useful for the diagnosis of infections caused by the various hepatitis viruses.

Prions

Prion is a shorthand term for proteinaceous infectious particles. They are smaller in size than
viruses and are believed to contain neither DNA nor RNA. Prions cause slow neurodegen-
erative diseases known as spongiform encephalopathies. They are classified as slow viral in-
fections because 20 to 30 years following exposure to the agent may elapse before symptoms
of infection develop in the patient. Creutzfeldt-Jakob disease and kuru are examples of hu-
man prion disease.

In recent years, prions have attracted international scientific and public attention
due to the outbreak of bovine spongiform encephalopathy, also known as "mad cow disease,"
in Great Britain and some other European countries. Mad cow disease causes infection pri-
marily in cattle and sheep, but human infections can result from eating infected animal meat.
Prions are highly resistant to destruction and are not inactivated by thorough cooking of in-
fected animal products. No treatments are available for diseases caused by prions and the dis-
eases are universally fatal, with death usually occurring within one year of the onset of symp-
tomatic disease.

The diagnosis of prion infection is problematic. Currently, there is no clinical lab-
oratory method available to establish the diagnosis. Instead, diagnosis is based on clinical sus-
picion confirmed by demonstrating characteristic spongiform changes (spongelike holes) in
histological sections of brain tissue, usually postmortem. Recent evidence indicates that these
spongiform changes may be seen also in more readily accessible tonsillar tissue.

EXPERIMENT 30.1 Determining the Titer of A Bacterial Virus (Bacteriophage)

As we have learned, viruses are unable to multiply except inside of living cells, human or bacterial. Like other viruses, those that
prey on bacteria (bacteriophages) attach to the host cell wall and insert themselves into the cell. There, one of two events may
take place. In the first, the viral nucleic acid takes over the metabolic machinery of the cell, directing it to produce new viral par-
ticles. The result is eventual death and lysis (rupture) of the bacterium, with the release of many new virions that search for in-
tact bacterial cells to infect. This process is known as the lytic cycle. In the second event, known as lysogeny, the viral nucleic acid
becomes integrated into the host cell chromosome, replicating with it each time. Lysogenic bacteriophage do not harm the host
cell until some process causes it to be awakened and initiate the lytic cycle. Several human pathogens, such as the diphtheria bacil-
lus, are lysogenized by viruses whose DNA directs the synthesis of toxins that are harmful to the human host.

In this experiment we will study the coliphage T2, which is a bacteriophage lytic for the bacterium Escherichia coli.

Purpose

To determine the titer of a coliphage by the plaque assay method

Materials

Overnight broth culture of Escherichia coli strain B

Coliphage T2 (1:100 suspension in broth)

Test tubes containing 4.5 ml tryptic soy broth

Test tubes containing 2.5 ml soft tryptic soy agar (0.7%)

Plates of tryptic soy agar at room temperature

Sterile 1.0- and 5.0-ml pipettes

Pipette bulb or other pipetting device

242

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

-3

-4

Procedures

1. Melt the tubes of soft agar and place them in a 50°C water bath.

2. Set up a rack with 8 tubes containing 4.5 ml of tryptic soy broth. Label one each of the tubes as follows: 10 J , 10
10~ 5 , 10" 6 , 10" 7 , 10" 8 , 10" 9 , and "Control."

3. Label 8 soft agar tubes and 8 tryptic soy agar plates in sequence as above beginning with 10 and ending with 10 and
a control (refer to fig. 30.2).

4. With a 1.0-ml pipette, remove 0.5 ml of the 1:100 coliphage suspension and place it in the tube of tryptic soy broth
labeled 10 . Discard the pipette.

5. With a new pipette, mix the suspension in the tube labeled 10 by pipetting up and down several times (use a bulb or
other pipetting device). Remove 0.5 ml from this tube and transfer it to the tube of broth labeled 10 . Discard the
pipette.

6. Repeat step 5, transferring coliphage from the tube labeled 10 to the tube labeled 10 and so on until 0.5 ml of phage

O Q

has been transferred from the tube labeled 10 to the tube labeled 10

7. With a new pipette, mix the contents of the tube labeled 10 and then discard 0.5 ml from this tube into a container of
disinfectant. Do not add any coliphage to the tube labeled control.

8. Using a 5.0-ml pipette, transfer 0.5 ml of the E. coli overnight culture to each of the melted tubes of soft agar including the
control tube. After you add the bacterial inoculum, return each tube to the 50°C water bath but move on quickly to the
next steps.

9. The next procedure will be easier to perform if you work with a partner. Transfer 0.1 ml of the tryptic soy broth from the
tube labeled "Control" (in the series of coliphage dilutions) to the tube of soft agar labeled "Control." Without setting
down the pipette or touching it to any surface, hand the tube to your partner. Your partner should mix the contents by

Figure 30.2 Flow diagram for Experiment 30.1 .

Experiment step(s)

0.5 m

4-7

Dilute this

direction

9-11

Coliphage
1100

0.5 ml 0.5 ml 0.5 ml 0.5 ml 0.5 ml 0.5 ml

0.5 ml

Control

0.1 ml 0.1 ml 0.1 ml 0.1 ml 0.1 m

0.1 m

0.1 ml

Add 0.5 ml E. coil culture

0.1 m

~ v ) ~~kJ^J

-6

-8

-9

-10

Control

-10

Control

Incubate and examine for plaque formation

Tryptic soy broth

*■ Discard

Steps 9-11

this direction

Soft agar

Mycoplasmas, Rickettsiae, Chlamydiae, Viruses, and Prions

243

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

rolling the tube between his/her palms and then layering the soft agar over the surface of the tryptic soy agar plate labeled
"Control." The plate should then be rotated and tilted so that the soft agar is spread evenly across the surface of the firmer
agar plate. Set the plate aside until the soft agar hardens.

10. Using the same 1.0-ml pipette as in step 9, remove 0.1 ml of the coliphage suspension from the tryptic soy broth tube
labeled 10 and transfer it to the tube of soft agar labeled 10 . Note that the labels on the broth and soft agar tubes are
not the same (but both are correct). Hand the tube to your partner who will layer the contents carefully over the agar plate
labeled 10" 10 .

11. Continue to repeat step 10, transferring 0.1 ml from each coliphage dilution to the soft agar tube labeled with the next
higher dilution, until you end with the 10 dilution in the soft agar tube labeled 10 .You can use the same pipette
throughout unless you think you have contaminated it by touching it to a surface. In each instance, your partner should
layer the contents of the tube of soft agar over the corresponding plate of tryptic soy agar.

12. After all plates have hardened, incubate them at 37°C until the next session.

13. Examine the plates for evidence of the lytic activity of the coliphage on the strain of E. coli. A clear area or "plaque" will
appear at each spot where one viral particle attached to and entered one bacterial cell, lysed the cell, and invaded adjacent
bacteria.

14. Compare the plates that show plaques with the control plate, which should show an even "lawn" of bacterial growth.

15. Choose a plate on which the number of plaques is between 30 and 300 and count them. Calculate the original
concentration (plaque-forming units, or PFU) of the coliphage by using the following formula.

PFU/ml of original suspention = number of plaques X 1 /plate dilution

16. Record your results and compare them with those of other groups.

PFU/ml =

Questions

1. What are mycoplasmas? How are they identified?

2. Can mycoplasmas be studied with the light microscope? If so, what kind of preparations are made?

3. What are the functions of the bacterial cell wall? How does its absence affect the behavior of bacteria?

4. How do mycoplasmas differ from other bacteria?

244

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

5. How do viruses differ from other microorganisms?

6. How are rickettsiae transmitted?

7. Name the important chlamydial diseases.

8. How are viruses identified in the laboratory?

9. What is an arbovirus?

10. What is a lysogenic bacteriophage? Why is it important in some diseases?

11. Define cell culture.

12. How does the electron microscope differ from the light microscope? Describe its principles

13. Provide a brief definition of a prion.

Mycoplasmas, Rickettsiae, Chlamydiae, Viruses, and Prions

245

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

14. Name three human diseases caused by prions.

15. Why are prion diseases called slow viral infections?

16. Complete the following table.

Disease

Type of Virus

Major Symptoms

Transmission

Immunization

Rabies

Poliomyelitis

Influenza

Rubella

Chickenpox (varicella)

Shingles (zoster)

Mumps

Hepatitis A

Hepatitis B

Dengue

AIDS

17. Complete the following table.

Disease

Name of Organism

Transmission to Humans

Rocky Mountain spotted fever

Epidemic typhus

Rickettsialpox

Q fever

Trachoma

Psittacosis

Ehrlichiosis

246

Diagnostic Microbiology in Action

Morello-Mizer-Granato:

I. Diagnostic 11. Microbial Pathogens

Laboratory Manual and Microbiology in Action Requiring Special Companies, 2003

Workbook in Microbiology, Laboratory Techniques
7/e

Name

Class Date

Exercise

Fungi: Yeasts and Molds

Medical mycology is concerned with the study and identification of the pathogenic yeasts and
molds, collectively called fungi (sing., fungus). You should be familiar with a number of important
mycotic diseases.

Yeasts are unicellular fungi that reproduce by budding, that is, by forming and pinching
off daughter cells (see colorplate 41). Yeast cells are much larger (about five to eight times) than
bacterial cells. The best-known (and most useful) species is "bakers' yeast," Saccharomyces cerevisiae,
used in bread making and in fermentations for wine and beer production.

Molds are multicellular, higher forms of fungi. They are composed of filaments called
hyphae, abundantly interwoven in a mat called the mycelium. Specialized structures for reproduction
arise from the hyphae and produce conidia (also called spores), each of which can germinate to form
new growth of the fungus. The visible growth of a mold often has a fuzzy appearance because the
mycelium extends upward from its vegetative base of growth, thrusting specialized hyphae that bear
conidia into the air. This portion is called the aerial mycelium. You have often seen this on moldy
bread or other food, and you have probably also noted that different molds vary in color (black,
green, yellow) because of their conidial pigment (see colorplate 42).

Most of the thousands of species of yeasts and molds that are found in nature are sapro-
phytic and incapable of causing disease. Indeed, many are extremely useful in the processing of cer-
tain foods (such as cheeses) and as a source of antimicrobial agents. Penicillium notatum, for exam-
ple, is the mold that produces penicillin.

Mycotic Diseases and Their Agents

Fungal diseases fall into four clinical patterns: superficial infections on surface epithelial structures
(skin, hair, nails), systemic infections of deep tissues, and subcutaneous and opportunistic infections.

Superficial Mycoses

The pathogenic fungi that cause infections of skin, hair, or nails are often referred to collec-
tively as dermatophytes. There are three major genera of dermatophytes:

Trichophyton. This genus contains many species (e.g., T. mentagrophytes, T. rubrum, T. tonsurans) associated with "ringworm" in-
fections of the scalp, body, nails, and feet. "Athlete's foot" is perhaps the most common of these infections.

Microsporum. There are three common species of this genus: M. audouini, M. canis, and M.gypseum. These fungi cause ring-
worm infections of the hair and scalp, and also of the body.

Epidermophyton. One species, E.floccosum, causes ringworm of the body, including "athlete's foot." It does not affect hair or
nails.

These superficial fungal infections are called ringworm because the lesions are often circular
in form. The medical term for ringworm is tinea, followed by a word indicating the involved
area, for example, tinea capitis (scalp), tinea corporis (body), or tinea pedis (feet).

Systemic and Subcutaneous Mycoses

Many of the fungi involved in systemic and subcutaneous infections are either yeasts or dis-
play both a yeast and a mold phase (they are said to be dimorphic because of this). The yeast

Fungi: Yeasts and Molds

247

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

phase of dimorphic fungi grows best at 35 to 37°C, whereas their mold phase grows opti-
mally at a lower (25°C) temperature. The most important pathogenic fungi that cause sys-
temic or subcutaneous disease are shown in table 31.1.

Opportunistic Mycoses

Under ordinary circumstances, fungi are of low pathogenicity and have little ability to in-
vade the human body. However, when the host's immune defense mechanisms are decreased
by illness (leukemias, lymphomas, acquired immunodeficiency syndrome) or by drugs
(steroids, cancer chemotherapeutics, transplantation drugs), fungi (as well as other microor-
ganisms) find the opportunity to invade and establish disease. Because few antimicrobial
agents are available to combat fungal infections, these represent among the most serious op-
portunistic illnesses and frequently are the direct cause of the patient's death. Some oppor-
tunistic fungi, such as the yeasts Candida and Cryptococcus (see colorplates 41 and 43), are not
always associated with immunosuppression, but others, especially species of Aspergillus (see
colorplates 44 and 45) and Mucor, infect only "disabled" hosts. Because the latter organisms
are also widespread in the environment, health care personnel must be certain that specimens
obtained from immunocompromised patients are always collected in sterile containers and
in such a manner as to avoid contamination with airborne fungal conidia. The microbiology
technologist must also protect culture plates and broths from such contamination so that any
molds that grow out are known to come from the patient and not the environment. Some
agents of opportunistic fungal infections are listed in table 31.1.

Table 31 .1 Classification of Systemic and Subcutaneous Mycoses

Type

Sources

Entry Routes

Primary Infection

Disease

Causative Organism(s)

Primary systemic

Exogenous

Respiratory or parenteral

Pulmonary or

Histoplasmosis

Histoplasma capsulatum

mycoses

extrapulmonary

Coccidioidomycosis

Blastomycosis
(N. American)

Cryptococcosis

Paracoccidioidomycosis
(S. American
blastomycosis)

Coccidioides immitis
Blastomyces dermatitidis

Crypotococcus
neoformans*

Paracoccidioides
brasiliensis

Subcutaneous

Exogenous

Parenteral

Extrapulmonary

Sporotrichosis

Sporothrix schenckii

mycoses

Chromoblastomycosis

Phialophora, Fonsecaea,
Cladosporium,
Rhinocladiella species

Skin

Subcutaneous

Mycetoma (Madura foot)

Madurella,

Pseudallescheria
species and others

Opportunistic

Endogenous

Skin, mucosae, or

Superficial or

Candidiasis

Candida albicans and

mycoses

gastrointestinal tract

disseminated

other species

Exogenous

Respiratory

Pulmonary

Aspergillosis

Aspergillus fumigatus and
other species

Exogenous

Respiratory or parenteral

Pulmonary or
extrapulmonary

Zygomycosis

Mucor, Rhizopus,
Absidia, and others

Also a cause of opportunistic mycosis

248

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Laboratory Diagnosis

The laboratory diagnosis of a fungal infection depends on the direct microscopic detection
of fungal structures in clinical samples and/or the recovery in culture and subsequent iden-
tification of the fungus. Fungi may be isolated from a variety of clinical specimens repre-
senting the focus of infection (sputum, spinal fluid, tissue, pus aspirated from lymph nodes
or other lesion, bone marrow aspirates, skin scrapings). All specimens of sufficient quantity
submitted for fungal culture should be examined microscopically for fungi. When there is
not sufficient specimen to allow both a culture and direct microscopic examination, the cul-
ture has priority over the smear because culture is more sensitive than microscopic exami-
nation. However, observing a fungus in a clinical specimen is often valuable in establishing
the significance of the fungus (i.e., ruling out contamination) and in providing early infor-
mation that may be crucial for determining appropriate patient therapy.

In general, serological tests (looking for a significant change in antibody titer in
paired serum specimens, see Exercise 33) have limited application for the diagnosis of most
fungal infections. Exceptions to this rule include certain dimorphic fungal diseases, such as
histoplasmosis and coccidioidomycosis. The purpose of this laboratory exercise is to acquaint
the student with some direct microscopic and cultural methods that are available for estab-
lishing the laboratory diagnosis of a human mycosis.

Direct Microscopic Examinations

Histopathology. The visualization of fungal structures (hyphae, conidia, etc.) in tissue obtained by biopsy or at autopsy estab-
lishes the involvement of the fungus in human disease. Specialized tissue stains such as Giemsa, methenamine silver (see colorplate
45), or mucicarmine may be used to facilitate the detection of the fungus in tissue. The particular fungal structures that are seen
in tissue can sometimes confirm the identity of the fungus (e.g., spherules [the yeast form] of Coccidioides immitis [see fig. 31.1] or
cysts of Pneumocystis carinii [see colorplate 46]) or suggest the presence of a particular fungal group. In this latter case, culture is
used to confirm the presence and identity of the fungal pathogen.

Direct Smears. Direct smears of patient material other than tissue are often made to detect the presence of fungal elements
microscopically. Several types of stains or reagents are used to facilitate the detection of certain fungi.

1. Ten percent potassium hydroxide: Potassium hydroxide preparations are used to examine a variety of clinical samples
including hair, nails, skin scrapings, fluids, or exudates. The potassium hydroxide solution serves to clear away tissue cells

Figure 31.1

KOH preparation of lung biopsy material showing spherule (yeast form) of Coccidioides immitis. Many endospores
bud off from the thick-walled spherule, which has burst, releasing the endospores into the surrounding tissue. Each
endospore is able to form a new spherule. In culture, this dimorphic fungus will grow as the filamentous hyphal
form.

Fungi: Yeasts and Molds

249

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

and debris, making the fungi more prominent. Slides must be examined with reduced illumination to allow fungal
structures to be seen (see colorplate 47).

2. Calcofluor white: This reagent is used with most specimen types to detect the presence of fungi by fluorescence
microscopy. The cell walls of the fungi bind the stain and fluoresce blue- white or apple green, depending on the filter
combination used with the microscope. This stain is useful for examining skin scrapings for the presence of dermatophytes
and tissues and body fluids for yeast and filamentous fungi (see colorplate 45).

3. India ink: This traditional test is usually ordered to screen for the presence of Cryptococcus neoformans in spinal fluid samples.
This yeast is encapsulated, and the capsule can be visualized readily against the black background of the India ink as a clear
halo surrounding the yeast cell (see colorplate 43) . The India ink test is very insensitive (detecting only 40% of cases of
cryptococcal meningitis) and therefore has been superseded by other tests, such as the cryptococcal antigen latex
agglutination test, which detects more than 90% of cases of cryptococcal meningitis. The India ink test is rarely performed
in clinical microbiology laboratories.

4. Wright, Giemsa, or Diff-Quik stains. These specialized stains are often used on blood and bone marrow smears to look for
intracellular yeast forms of Histoplasma capsulatum.

5. Gram stain: Most fungi are not stained well by the Gram-stain procedure, and therefore, it is of limited use when
examining specimens for fungal forms. It is generally reliable only for detecting the presence of Candida species (see
colorplate 41), Sporothrix schenkii, and perhaps a few other fungi in clinical material. In Gram-stained spinal fluid
specimens, Cryptococcus neoformans may appear as irregularly staining gram-positive yeast cells surrounded by an orange
capsule (see colorplate 43).

Culture

The cultural isolation of a fungus from a clinical specimen and its subsequent identification
is the definitive test for establishing the etiology of a fungal disease. The medium most com-
monly used to isolate fungi from clinical specimens is Sabouraud dextrose agar. Most fungi
grow well at room temperature; however, depending on the fungus, several days to weeks or
months may be required for its recovery and complete characterization. The following dis-
cussion summarizes some of the cultural procedures used to identify yeasts and molds.

Yeasts. Yeasts, such as Candida species and Cryptococcus neoformans, are a heterogeneous group. Their identification is based on
colonial and cellular morphology and biochemical characteristics. Morphology is used primarily to establish the genus identifi-
cation, whereas biochemical tests are used to differentiate the various species.

1. Germ tube test: More than 90% of yeast infections are caused by Candida albicans. The germ tube test is a rapid and
inexpensive method used to identify this species. When they are inoculated into a tube containing 1 ml of horse serum, all
strains of C. albicans produce a specialized structure, called a germ tube, within 2 hours of incubation at 35°C (see fig.
31.2). All other yeast isolates are "germ tube negative" within that same time period, but prolonged incubation past 2
hours may result in false-positive tests.

2. Biochemical characterization: Traditional tests used for identifying yeasts to the species level involve the assimilation and/or
degradation of various carbohydrates. These tests are now commercially available in kit form, much as bacterial
identification systems are (see Experiment 24.6). Popular systems include the Minitek, the API 20C Yeast Identification
System, the Uni-Yeast-Tek System, and the automated bioMerieux-VitekYBC, all of which are modifications of the
classic carbohydrate degradation and assimilation techniques. Identification results are usually available within 24 to 72
hours.

Molds. The identification of filamentous fungi (molds) depends on a number of factors including growth rate, colonial ap-
pearance, microscopic morphology, and some metabolic properties. A highly experienced technologist or mycologist is needed
to identify most molds reliably.

1. Macroscopic appearance: A giant colony culture (a single colony grown on the center of a culture plate) is often prepared
to determine the growth rate of a mold and to observe its colonial appearance (color, texture of hyphae, etc.) (see

250

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Figure 31 .2 Germ-tube formation by Candida albicans. The two yeast cells in the center have sprouted a germ tube (arrows)

when incubated for 2 hours in horse serum. Not all cells in the preparation will form the germ tube. The halo around
the cells represents light refraction and not a capsule.

colorplate 42). The bottom side of the plate (called the "reverse") is also examined because some fungi produce a diffusible
pigment that is evident from the reverse side only. These macroscopic features are useful in the preliminary identification of
the fungus.
2. Microscopic appearance: Accurate identification of a mold is based on microscopic examination of the conidia and the
fungal structures on which they are borne. Microscopic preparations may be made directly from the culture (see colorplate
48), or mycologists may use a slide culture technique that allows these sporulating structures to be viewed microscopically
at various stages of growth without disturbing their characteristic arrangements. To prepare a slide culture, a small square
block of Sabouraud agar is placed on a sterile microscope slide in a sterile petri dish. The agar is inoculated with the
fungus to be identified and then covered with a cover glass. A piece of wet cotton is placed in the dish to keep the
atmosphere moist and prevent drying of the agar medium. The dish and slide are incubated at room temperature or in a 25
to 30°C incubator. The slide can be viewed directly under the microscope, or the cover glass can be removed, stained with
lactophenol cotton blue, and mounted on a clean slide for viewing (see colorplate 44) . This slide culture system improves
the chances of observing fungal structures that permit genus and species identification.

A Scotch tape preparation such as illustrated in figure 31.3 can be prepared from
colonies growing on agar plates. This type of preparation also allows fungal structures to be
viewed with minimum disruption of their characteristic morphology. Table 31.2 shows the
outstanding morphological features of some important pathogenic fungi.

In this exercise you will study both fresh and prepared materials.

Purpose

To observe the microscopic structures of some fungi

Materials

Sabouraud agar slant culture of Candida albicans

Tubes containing 1.0 ml of inactivated horse serum

Sabouraud agar plate cultures of Aspergillus, Rhizopus, Penicillium

Blood agar plates exposed 3 to 5 days earlier for 30 minutes at home, in class, public
transportation, etc.

Glass microscope slides and coverslips

Transparent tape (e.g., Scotch tape)

Dropper bottles containing lactophenol cotton blue and methylene blue

Capillary pipettes and pipette bulbs

Prepared slides of dermatophytes

Prepared slides of yeast and mold phases of a systemic fungus

Projection slides if available

Fungi: Yeasts and Molds

251

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Figure 31 .3 Scotch tape preparation.

1 . Using a capillary pipette
place a drop of lactophenol
cotton blue on the center
of the slide.

sticky
ide

colony
of mold

2. Hold a piece of Scotch
tape in a U shape,
sticky side down.

3. Gently touch the
surface of a mold
colony.

4. Place tape sticky side
down in drop of lactophenol
cotton blue.

5. Fold extra length of
tape around edges of
slide. Examine
microscopically.

Procedures

1. Pick up a small amount of yeast growth from the tube of Candida albicans.

2. Lightly inoculate a tube of horse serum with the growth. Do not make a turbid suspension. Incubate the tube at 35°C for
2 hours.

3. At the end of 2 hours, use a capillary pipette to place a small drop of the serum suspension on a microscope slide. Cover
the drop with a coverslip. Examine the slide under the low and high dry power of your microscope. You will need to
reduce the light intensity by partially closing the iris diaphragm of your microscope (see figure 1.1).

4. If the test is positive, you should see a small stalk or "germ tube" sprouting from several of the yeast cells. This confirms the
identification of the yeast as Candida albicans.

252

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Table 31.2 Some Important Pathogenic Fungi

Organisms

Morphological Features

Diseases

Yeasts or yeastlike

Cryptococcus neoformans

Candida albicans

Yeasty soft colonies

Encapsulated budding cells

Budding cells, pseudomycelium, and
chlamydospores

Pneumonia, meningitis, other tissue infections
Skin and mucosal infections, sometimes systemic

Systemic fungi

Histoplasma capsulatum

Coccidioides immitis

Blastomyces dermatitidis
Paracoccidioides brasiliensis

In tissues, intracellular and yeastlike

In culture at 37°C, a yeast

In culture at room temperature, a mold with
characteristic macroconidia (spores)

In tissues, produces spherules filled with
endospores

In culture, a cottony mold with fragmenting
mycelium

In tissues, a large thick-walled budding yeast

In culture at 37 °C, a yeast

In culture at room temperature, a mold

In tissues, a large yeast showing multiple budding

In culture at 37°C, a multiple budding yeast

In culture at room temperature, a mold

Histoplasmosis is primarily a disease of the lungs;
may progress through the mononuclear
phagocyte system to other organs

Coccidioidomycosis is usually a respiratory disease;
may become disseminated and progressive

North American blastomycosis is an infection that
may involve lungs, skin, or bones

Paracoccidioidomycosis (South American

blastomycosis) is a pulmonary disease that may
become disseminated to mucocutaneous
membranes, lymph nodes, or skin

Subcutaneous fungi

Sporothrix schenckii

Cladosporium ~\
Fonsecaea V
Phialophora J
Madurella ~\
Pseudallescheria >
Curvularia and others J

In tissues, a small gram -positive, spindle-shaped
yeast

In culture at 37°C, a yeast

In culture at room temperature, a mold with
characteristic spores

In tissues, dark, thick-walled septate bodies

In culture, darkly pigmented molds

Tissue and culture forms vary with causative fungus

Sporotrichosis is a local infection of injured

subcutaneous tissues and regional lymph nodes

Chromoblastomycosis is an infection of skin and
lymphatics of the extremities caused by any one
of several species

Mycetoma (maduromycosis, madura foot) is an
infection of subcutaneous tissues, usually of the
foot, caused by any one of several species

Superficial fungi

Microsporum species
Trichophyton species
Epidermophyton floccosum

These fungi grow in cultures incubated at room
temperatures as molds, distinguished by the
morphology of their reproductive spores

Ringworm of the scalp, body, feet, or nails

5. Make a drawing of the yeast cells that you see with and without germ tubes.

6. Make a Gram stain of the Candida culture and draw your observations.

7. Prepare a transparent tape preparation of the Aspergillus, Rhizopus, and Penicillium growth as follows (see figure 31.1): Place

a drop of lactophenol cotton blue on a clean microscope slide. Carefully uncover a plate culture of one of the molds. Cut a
piece of transparent tape slightly longer than the length of the microscope slide (about 4 inches). Hold the tape in a U
shape with the sticky side down and gently touch the surface of a mold colony. Some of the colony growth will adhere to
the tape. Place the tape with the sticky side down across the microscope slide so that the colony growth is in contact with

Fungi: Yeasts and Molds

253

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

the lactophenol cotton blue. Fold the extra length of tape around the edges of the slide. Examine the slide under the low
and high-dry objectives of your microscope as you did the germ- tube preparation.

8. Repeat the procedure with any molds you see growing on the blood agar plates that you exposed to the environment.

9. Record your results.

10. Examine the prepared slides and make drawings of your observations.

Results

1. Draw a diagram showing all the structures of Candida albicans that you observed

Germ tube
preparation

Gram stain
Gram reaction

2. List the principal differences you have observed in yeast cells as compared with bacteria.

3. Draw the conidia, conidia-bearing structures, and hyphae of each of the following:

Aspergillus

Rhizopus

Penicillium

Colony color?

254

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

4. Draw the conidia, conidia-bearing structures, and hyphae of three molds growing on the blood agar plates you exposed to
the environment. Do they resemble any of the fungi you observed previously?

Colony color?

Location where plate exposed

5. Draw the microscopic structures you have seen in each phase of a systemic fungus

Questions

1. For each of the diseases listed, indicate the type of specimen(s) that should be collected for laboratory diagnosis

Cryptococcosis:

Athlete's foot:

Tinea capitis:

Thrush:

Histoplasmosis:

2. What is a superficial mycosis?

3. How would you recognize a patients ringworm infection? Would you take any special precautions in collecting a clinical
sample of the ringworm lesion? If so, explain.

Fungi: Yeasts and Molds

255

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

4. Should hospitalized patients who share the use of a shower room wear protective slippers when using it? Why:

5. What are some of the valuable uses of saprophytic fungi?

6. How is the Wood's lamp used in the diagnosis of tinea capitis:

7. From what source do patients with Aspergillus infections acquire the organism?

8. What is the advantage of viewing mold structures in a transparent tape preparation?

9. What fungus can be identified reliably by using the germ tube test?

10. Name three stains or reagents that may be used to facilitate the microscopic detection of fungi in clinical samples

1 1 . What is the main advantage of using the slide culture technique for identifying molds?

256

Diagnostic Microbiology in Action

Morello-Mizer-Granato:

I. Diagnostic 11. Microbial Pathogens

Laboratory Manual and Microbiology in Action Requiring Special Companies, 2003

Workbook in Microbiology, Laboratory Techniques
7/e

Name

Class Date

Exercise

Protozoa and Animal Parasites

Medical parasitology is concerned with the study and identification of the pathogenic protozoa and
helminths (worms) that cause the parasitic diseases of humans and animals.

Protozoa

Protozoa are the largest of the unicellular true microorganisms. They are classified in the
Kingdom Protista although their name implies that they were the forerunners of the animal
kingdom (proto = first; zoa = animal).

The basic structures of all protozoa include a nucleus well defined by a nuclear mem-
brane, lying within cytoplasm that is enclosed by a thin outer cell membrane. Other specialized
structures, such as cilia or flagella (see colorplate 49) for locomotion or a gullet for food in-
take, vary with different types of protozoa. Six major groups of protozoa are distinguished
on the basis of their locomotory structures or their reproductive mechanisms (see fig. 32.1).

Amebae. Simple ameboid forms. Move by bulging and retracting their cytoplasm in any direction. Major pathogen is Entamoeba
histolytica (see colorplate 50).

Ciliates. Move by rapid beating of cilia (fine hairs) that cover the cell membrane. Balantidium coli is a protozoan ciliate that may
cause human disease.

Flagellates. Possess one or more flagella that give them a lashing motility. Giardia lamblia (see colorplate 51), Trichomonas vagi-
nalis (see colorplate 49), and the trypanosomes are the major pathogens in this group.

Apicomplexa. No special structures for locomotion (some immature forms have ameboid motility). Reproductive cycle in-
cludes both immature and mature forms (later called sporozoites) . Toxoplasma gondii and Plasmodium species (see colorplate 52),
which are the malarial parasites, are the representative pathogens in this group.

Coccidia. Represent a subphylum of the Apicomplexa. Coccidia have a complex life cycle in which all stages of parasite de-
velopment are intracellular. Major genera include Cryptosporidium (see colorplate 53), Cyclospora, and Isospora.

Microspora. Includes a large group of obligate, intracellular protozoa that produce spores. These protozoa are classified in more
than 100 genera and 1,200 species, collectively called microsporidia. Major genera causing human disease are Enterocytozoon, En-
cephalitozoon, Nosema, and Pleistophora .

Diagramatic examples of the amebae, ciliates, flagellates, and the Apicomplexa are
shown in figure 32.1.

As indicated, species from each of these protozoan groups are associated with hu-
man diseases. Some of them are carried into the body through the gastrointestinal tract (in
contaminated food or water or by direct fecal contamination of objects placed in the mouth),
localize there, and produce diarrhea or dysentery. Others are carried by arthropods, which
inject them into the body when they bite. This group of protozoa then infects the blood and
other deep tissues. The pathogenic protozoa are summarized in table 32.1.

It should also be noted that some of the intestinal protozoa may live normally in
the bowel without causing damage under ordinary circumstances. Some flagellated protozoa
frequently are found on the superficial urogenital membranes and sometimes are troublesome
when they multiply extensively and irritate local tissues.

Protozoa and Animal Parasites

257

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Figure 32.1 Diagrams of four types of protozoa, (a) An active ameba. (b) A ciliated protozoan (Balantidium coli), (c), (d), and

(e) Three types of flagellated protozoa, (f) Developmental stages of the malarial parasite, a sporozoan (Plasmodium
species).

Ectoplasm

(a) Ameba

Endoplasm

Nucleus

Contractile
vacuole

Ingested

red blood ce

(b0 Ciliate

Micronucleus

Macronucleus

Ciliated mouth

Food
vacuole

r Contractile
vacuole

Gullet

Cilia

FLAGELLATED PROTOZOA

<c) Trichomonas

(d)

(a) Trypanosoma

Nucleus

— ^Flagella

Undulating
membrane

Nucleus

Undulating
membrane

Flagella (8)

Flagellum

Nucleus

(f) A sporozoan. The malarial parasite's life cycle

i '

-— Hill

ASEXUAL CYCLE IN HUMAN

Developing
parasite

SEXUAL CYCLE IN MOSQUITO

Merozoites

Gametocytes

Red blood

Sporozoites

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Table 32.1 Pathogenic Protozoa

Disease

Type of Protozoa

Name of Organism

Entry Route

Amebiasis (dysentery)

Ameba

Entamoeba histolytica

Ingestion

Balantidiasis (dysentery)

Ciliate

Balantidium coli

Ingestion

Giardiasis (diarrhea)

Flagellate

Giardia lamblia

Ingestion

Trichomoniasis (vaginitis) (see colorplate 49)

Flagellate

Trichomonas vaginalis

Sexual transmission

Trypanosomiasis: African sleeping sickness
American form: Chagas disease

Flagellate

Trypanosoma brucei gambiense
T brucei rhodesiense
T cruzi

Arthropod bite
Arthropod bite

Leishmaniasis: Kala-azar
American form: espundia

Flagellate

Leishmania donovani
L braziliensis
L mexicana

Arthropod bite
Arthropod bite

Malaria (see colorplate 52)

Apicomplexan

Plasmodium vivax
P. malariae
P. falciparum

Arthropod bite

Toxoplasmosis (systemic infection)

Apicomplexan

Toxoplasma gondii

Ingestion or congenital

Cryptosporidiosis (diarrhea)

Coccidian

Cryptosporidium parvum

Ingestion

Microsporidiosis (diarrhea, systemic)

Micros poridian

Enterocytozoon bieneusi and others

Unknown
? Ingestion
? Inhalation

Other amebae live freely in the environment, in soil and water. Under special cir-
cumstances, some of these organisms can infect humans. Members of the genus Naegleria in-
habit freshwater ponds, lakes, and quarries. When people dive or swim in water containing the
amebae, the organisms can be forced up with water through the thin nasal passages, directly
into the central nervous system to cause an almost universally fatal meningoencephalitis (affects
both meninges and brain). Acanthamoeba species (see fig. 32.2) are associated with corneal in-
fections in persons whose contact lenses or contact lens care solutions become contaminated
by the amebae. To avoid infection these lenses and care solutions must be kept meticulously
clean. Corneal transplant is usually required for patients with Acanthamoeba eye infection.

Parasitic Helminths

Helminths, or worms, are soft-bodied invertebrate animals. Their adult forms range in size
from a few millimeters to a meter or more in length, but their immature stages (eggs, or ova,
and larvae) are of microscopic dimensions. Relatively few species of helminths are parasitic
for humans, but these few are widely distributed. It has been estimated that 30% of the earth's
human inhabitants harbor some species of parasitic worm.

There are two major groups of helminths: the roundworms, or nematodes, and the
Jlatworms, or platyhelminths. The latter are again subdivided into two groups: the tapeworms
(cestodes) and flukes (trematodes). A summary of the major characteristics of these groups is
given here.

Protozoa and Animal Parasites

259

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Figure 32.2 Acanthamoeba trophozoite (bottom center) and cysts (retractile objects at top right) isolated from the contact lens

of a patient who required a corneal transplant because of the infection. The tiny objects throughout the background
are cells of Escherichia coli on which the amebae feed when grown in culture.

Roundworms (Nematodes). Roundworms are cylindrical worms with bilateral symmetry. Most species have two sexes, the
female being a copious egg producer. These ova hatch into larval forms that go through several stages and finally develop into
adults. In some instances, the eggs of these worms are infective for humans when swallowed. In the intestinal tract they develop
into adults and produce local symptoms of disease. In other cases, the larval form, which develops in soil, is infective when it pen-
etrates the skin and is carried through the body, finding its way finally into the intestinal tract where the adults develop. In the
case of Trichinella (the agent of trichinosis), the larvae are ingested in infected meat, but penetrate beyond the bowel and become
encysted in muscle tissue. One group of roundworms, the filaria, are carried by arthropods and enter the body by way of an in-
sect bite. (See table 32.2.)

Flatworms (Platyhelminths) . Flatworms are flattened worms that also show bilateral symmetry. Some are long and seg-
mented (tapeworms); others are short and nonsegmented. Most are hermaphroditic.

Tapeworms (Cestodes). Tapeworms are long, ribbonlike flatworms composed of individual segments (proglottids) , each of
which contains both male and female sex organs. The tiny head, or scolex, may be equipped with hooklets and suckers for at-
tachment to the intestinal wall. The whole length of the tapeworm, the strobila, may have only three or four proglottids or sev-
eral hundred. Eggs are produced in the proglottids (which are then said to be gravid) and are extruded into the bowel lumen. Of-
ten the gravid proglottids break away intact and are passed in the feces. All tapeworm infections are acquired through ingestion
of an infective immature form, in most cases larvae encysted in animal meat or fish (e.g. Diphyllobothrium latum, see colorplate
54). Usually development into adult forms occurs in the intestinal tract, and the tapeworm remains localized there. In one type
of tapeworm infection, echinococcosis, the eggs are ingested, penetrate out of the bowel, and develop into larval forms in the
deep tissues (see colorplate 55).

Flukes (Trematodes). Some flukes are short, ovoid or leaf-shaped, and hermaphroditic; others are elongate, thin, and bisex-
ual. The flukes are not segmented. They are usually grouped according to the site of the body where the adult lives and produces
its eggs, that is, blood, intestinal, liver, and lung flukes. Some of these infections are acquired through the ingestion of larval forms
encysted in plant, fish, or animal tissues. In others, a larval form (swimming freely in contaminated water) penetrates the skin and
makes its way into deep tissues.

Table 32.2 summarizes the important helminths that cause disease in humans.

Laboratory Diagnosis

Almost all parasitic diseases, whether intestinal or extraintestinal, are diagnosed by finding
the organism in appropriate clinical specimens, usually by microscopic examination.
Intestinal infections are generally limited to the bowel, and therefore, fecal material is the
specimen of choice. In extraintestinal infections, the diagnostic stage of the parasite may be

260

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Table 32.2 Important Helminths of Humans

Parasite

Transmission

Entry Route

Roundworms

Enterobius vermicularis (pinworm)

Trichuris trichiura (whipworm)

Ascaris lumbricoides

Necator americanus (hookworm)

Trichinella spiralis

Wuchereria and others (filarial worms)

Eggs, via direct fecal contamination

Eggs matured in soil

Larvae matured in soil

Larvae in infected pork or other animal

Larvae in arthropod host

Mouth

Skin

Mouth

Skin

Tapeworms

Taenia solium (pork tapeworm)
Taenia saginata (beef tapeworm)
Diphyllobothrium latum (fish tapeworm)
Echinococcus granulosus

Larvae in infected pork
Larvae in infected beef
Larvae in infected fish
Eggs in dog feces

Mouth
Mouth
Mouth
Mouth

Blood flukes

Schistosoma species

Larvae swimming in water

Skin (or mucosa)

Liver fluke

Clonorchis sinensis

Larvae in marine plants or fish

Mouth

Lung fluke

Paragonimus westermani

Larvae in infected crustaceans

Mouth

Intestinal fluke

Fasciolopsis buski

Larvae in marine plants or fish

Mouth

found in blood, tissue, or exudates, so that these specimen types must be examined. With
rare exceptions, such as extraintestinal amebiasis and toxoplasmosis, routine serological tests
have no application in the diagnosis of parasitic diseases.

Intestinal Parasitic Infections

Protozoa or helminths may cause intestinal parasite infections. The laboratory diagnosis of
these diseases depends almost exclusively on finding the diagnostic stage(s) in fecal material.
If stool samples cannot be examined immediately after passage, a portion of the stool must
be placed in a stool collection kit with a special preservative to maintain the structural in-
tegrity and morphology of the diagnostic cysts, eggs, or larvae. There is no one perfect stool
preservative and the choice usually depends on the laboratory that performs the analysis.

Once a stool is received by the laboratory, the ova and parasite (O&P) examina-
tion may consist of any combination or all three of the following techniques: direct wet
mount, concentration, and permanent stained smear. Each technique is designed for a par-
ticular purpose. Traditionally, the direct examination is used to detect protozoan motility.
Since most laboratories use a stool preservative that kills protozoa, direct wet-mount exam-
inations for this purpose are not routinely performed. Instead, the direct wet-mount exam
may be used to screen for cysts and eggs that may be present in large numbers in the fecal
sample.

Fecal concentration procedures allow for the detection of small numbers of or-
ganisms that may be missed when only a direct smear is examined. There are two types of

Protozoa and Animal Parasites

261

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

concentration procedures: sedimentation and flotation. Both are designed to separate proto-
zoan cysts and oocysts, microsporidian spores, and helminth eggs and larvae from fecal de-
bris by centrifugation (sedimentation) or differences in specific gravity (flotation).

Stained smears can also be prepared from fecal samples to allow for the improved
detection and identification of intestinal protozoa. These slides serve as a permanent record
of the organism identified and may be used for teaching purposes as well. Three stains com-
monly used for the detection of intestinal parasites are the trichrome, iron-hematoxylin, and
modified acid-fast stains.

Intestinal Protozoa. The protozoa that parasitize the human intestinal and urogenital systems belong to five major groups:
amebae, flagellates, ciliates, coccidia, and microsporidia. With the exception of the flagellate Trichomonas vaginalis (an important
cause of vaginitis, see colorplate 49) and microsporidia of the genera Pleistophora, Nosema, and Encephalitozoon, all of these organ-
isms live in and may cause disease of the intestinal tract.

Intestinal helminths. Intestinal helminths are usually diagnosed by the microscopic detection of their eggs or larvae in feces.
Characteristics used in identification include size, shape, thickness of shell, special structures of the shell (mammillated covering,
operculum, spine, knob) and the developmental stage of egg contents (undeveloped, developing, embryonated) . Figure 32.3
shows the relative sizes and comparative morphologies of representative helminth eggs.

Extraintestinal Parasitic Infections

Blood and Tissue Protozoa. Among the protozoa that parasitize human blood and tissue, malaria is detected most fre-
quently in the United States. The laboratory diagnosis of malaria is made by examining blood smears collected from the patient.
Blood smears are stained with Giemsa or Wright stain, the common stains also used to examine blood films for hematological

Figure 32.3 Relative sizes and comparative morphologies of representative helminth eggs. Modified from Centers for Disease

Control and Prevention.

o
o

E 150

E
o

120

Clonorchis
sinensis

w-tei:

&•:•: V?M^?J;::

y.M

'^". - '..fi-c

■.ff.

Taenia

Hymenolepis Enterobius Trichuris
nana vermicularis trichiura

Ascaris

lumbricoides

(fertile)

Hookworm

Diphyllobothrium
latum

Hymenolepis
diminuta

Paragonimus
westermani

T^tX*

Ji.s-.

7 .-"•!• \

.v . '

m^*?**-

j_. -if.- 7 s.- %- -\.v \

:, >-i>-k',-iA :

J -Vta>

■:>*, %

-.+^^"n

. • .• ? ■■ Va.-u.la_ j.r-

^ <■ --.■>*> _> ■

7 1.^^ •:^^;, ,,:.'■■ tn\ f r

' r -w - V_ ^Z-, f s *-T. .;-V * . ,'■- " - ■_"' ..r_C -^ _ Ii ■ . i ^ .. ,t ^ . /J- ':■.■■: j. ■ ■ T: -_.i -^^.--^SKEincfv^UA '■■ *■ -■•r- < '•■^- •

■;■ : * - ttsc "c ■■C- Mj " • 3 1 -f t\.^ - sf--jr ■■ 1=, -~" i - j .- -- - ' j"-- -■-!.■■ .-^ ■ j k- \-v -i;. k^-ftW-.TM^vl 5±i-+ *■> 4

T j 1^ . c-^- -j-.VWi- ■ '■ ■ ■ ■ -v 1 " ". s. " -" <r- -"■ ■ v:r' ..•:■*:: it.- • .■£ - ■. i^ ^i ■ T r»* Ji ,!» p \t. .i,.«j"js.* ■ ■■ ■,■',?■ -r is. A

j t -.-: :- % -K <■„-> u,- ••• £ » "i.' •' t ., : '. /*■■;£ 1: ■« ■£*•' *■« •>■'■■■■:.?. : : -&:.. tfw^^-: e;3^.-.i:/S *;-■>;£

jk*.-. **' ■■■-: . ■■■'t;.^ ■■■?■

>~ - s

■■. r

, . J[ .if

v. rr rt' '

; " ' ■» ... "a" 1. '.- ' v «

s- ,:- ■- " v it • .• -^ = - r ^ .^ • ■ • - + V> -V^

5 k" j!

J|\ * "J.--* ■■■J* ? ^• ,ii

-i /-

_N.

■■4: ■!,■ . ..J> ^f,^.

150

120

Trichostrongylus Ascaris

lumbricoides
(infertile)

Schistosoma
japonicum

Schistosoma
hematobium

Schistosoma
mansoni

Fasciola
hepatic a

Fasciolopsis
buski

262

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

parameters. These stains help distinguish the various diagnostic stages and allow for the identification of Plasmodium species (see
colorplate 52). Of the four human malarial parasites, Plasmodium vivax and Plasmodium falciparum account for more than 95% of
infections, with P. vivax responsible for about 80% of these. Identification of malarial parasites to the species level is important for
establishing the prognosis of the disease and predicting the likelihood of drug resistance. Many strains of P. falciparum are now re-
sistant to chloroquine, the drug of choice for treatment. Other more exotic and far less common blood and tissue protozoan dis-
eases seen in the United States are leishmaniasis and trypanosomiasis. These infections, as well as malaria, are almost universally
imported into the United States by persons arriving from countries where the parasitic agents are endemic.

Toxoplasma gondii is a tissue protozoan that is an established cause of congenital disease. More recently, toxoplasmosis
has been recognized as a cause of central nervous system disease in HIV-infected patients. The diagnosis of toxoplasmosis often
depends on the detection or recovery of the organism from tissue biopsy material, CSF specimens, or buffy coat of blood (the
white blood cell layer that forms between the erythrocytes and plasma when anticoagulated blood is lightly centrifuged). In gen-
eral, however, such specimens do not reveal the parasites, even in the presence of active disease. Therefore, serological tests are
recommended in all suspected cases of toxoplasmosis.

Tissue Helminths. A large number of helminthic parasites, including nematodes, flukes, and tapeworms, live in human tis-
sues as adults or larvae. Diagnosis of infections caused by them often depends on the identification of the parasite's reproductive
products discharged in blood, feces, or other body fluids or, in the case of larval parasites, on the recovery from or detection of
the parasite itself in tissue.

Some of the more common tissue helminths are listed here for your review. The
nematodes include the filarial worms Wuchereria bancrofti, Brugia malayi, Onchocerca volvulus,
and Loa loa. Strongyloides species (a cause of cutaneous larva migrans), Toxocara canis (the cause
of visceral larva migrans), and Trichinella spiralis (the cause of trichinosis) are nematodes that
cause disease in the United States. The trematodes include the liver flukes (Fasciola hepatica,
Clonorchis sinensis, and Opisthorchis viverrini), lung flukes (Paragonimus westermani) , and the
blood flukes (Schistosoma species). Finally, are the cestodes or tapeworms, some of the more
common of which include Taenia solium (the cause of cystic ercosis), Diphyllobothrium latum
(the fish tapeworm, see colorplate 54), and Echinococcus granulosus and Echinococcus multilocu-
laris (the causes of hydatid cyst disease, see colorplate 55).

Except where noted, people with tissue helminth diseases become infected out-
side of the United States. Because of the current ease and frequency of global travel, how-
ever, microbiologists throughout the world must become familiar with the laboratory diag-
nosis of these infections.

Prepared slides and demonstration material will be studied in this exercise.

Purpose

Materials

To study the microscopic morphology of some protozoa and parasitic helminths, and to learn how
parasitic diseases are diagnosed

Prepared slides of protozoa

Prepared slides of helminth adults, eggs, larvae

Projection slides if available

Procedures

1. Examine the prepared slides, audiovisual or reading material, and make drawings of different forms of protozoa and
helminths .

2. Review demonstration material and assigned reading on the transmission and localization of parasites and complete the
table provided under Questions.

Protozoa and Animal Parasites

263

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Results

Draw each type of organism listed:
An ameba:

A ciliated protozoan:

A flagellated protozoan

A protozoan found in blood:

An adult roundworm:

An adult tapeworm

A helminth egg:

264

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Questions

1 . Complete the following table

Parasite

Localization in Body
(for Helminths, the Adult Form)

Specimens for Laboratory Diagnosis

Entamoeba histolytica

Trichomonas vaginalis

Trypanosoma brucei gambiense

Plasmodium vivax

Toxoplasma gondii

Naegleria fowleri

Enterobius vermicularis

Ascaris lumbricoides

Necator americanus

Trichinella spiralis

Taenia saginata

Echinococcus granulosus

Schistosoma

Clonorchis sinensis

2. Describe the basic structures of protozoa. Can these same structures be seen in bacteria using the light microscope?

3. Are any parasitic diseases directly communicable from person to person? If so, how are they transmitted? What kinds of
precautions should be taken in caring for patients with directly transmissible parasitic infections?

4. What is an arthropod? How can it transmit infection to humans?

Protozoa and Animal Parasites

265

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

5. What parasitic forms can be seen in the feces of a patient with hookworm? Cryptosporidiosis? Tapeworm? Trichinosis?
Malaria?

6. What parasitic forms can be seen in the blood of a patient with African sleeping sickness? Filariasis? Amebiasis?

7. What is meant by the "life cycle" of a parasite? What importance does it have to those who take care of patients with
parasitic diseases?

8. What precautions should be taken to prevent infection by "free-living" amebae?

266

Diagnostic Microbiology in Action

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

Name

Class

Date

Exercise

Serological Identification
of Patients' Antibodies

The serology laboratory tests patients' sera to detect specific antibodies. The results of such tests
may provide a "serological diagnosis" of an infectious disease in which antibody was produced in
specific response to the microbial antigens of the infecting microorganism. Demonstrating in-
creasing quantities of antibody in the serum during the course of disease from its onset (when there
may be little or no antibody) and acute stages through convalescence (when large amounts of an-
tibody have been produced) constitutes evidence of current active infection and indicates the na-
ture of the etiologic agent.

The interaction of a patient's antibody with a specific antigen may be demonstrated in
one of several ways. Descriptive terms for antibodies refer to the type of visible reaction produced.

Agglutinins are antibodies that produce agglutination, a reaction that occurs when
bacterial cells or other particles are visibly clumped by antibody combined with antigens on the
cell surfaces.

Precipitins are antibodies that produce precipitation of soluble antigens (free in solution and
unassociated with cells). When antibodies combine with such antigens, the large complexes that
result simply precipitate out of solution in visible aggregates.

Antitoxins are antibodies produced in response to antigenic toxins. Since toxins are sol-
uble antigens, in vitro interactions with antitoxins are seen as precipitation.

Opsonins are antibodies that coat the surfaces of microorganisms by combining with
their surface antigens. This coating on the bacterial cell makes them highly susceptible to phago-
cytosis by white blood cells. (The word "opsonin" has a Greek root that means "to relish food.")

Serological tests may be performed in vitro (in the test tube) or in vivo (in the body of
an animal or human). In in vitro tests, such as those just described, quantitative methods are often
employed. An in vivo test may employ experimental animals or cell cultures to demonstrate neu-
tralization of an antigen by its antibody. When antibody combines with antigen in the test tube, the
antigen is neutralized or inactivated. If it is a virus or other microorganism, it can no longer infect
tissues or cell cultures. If it is a toxin combined with antitoxin, it is no longer toxic for tissues. If
the antigen-antibody complex is injected into an animal, it will not cause disease or damage,
whereas a nonimmune control animal injected with the antigen alone will display characteristic
symptoms of disease, according to the nature of the antigen. Certain harmful antigens will also be
ineffective when injected into animals if specific antibodies have been administered to the animal
a short time before (passive immunity). Skin tests constitute another type of in vivo serological test.
Depending on the nature of the antigen injected intradermally, a humoral or cellular (delayed hy-
persensitivity) immune response may be demonstrated. Patients immune to diphtheria experience
no reaction at the site of injected diphtheria toxin (Schick test) because their circulating antitoxin
neutralizes this antigen. Conversely, when persons who are (or have been) infected by tubercle
bacilli are injected with a purified protein derivative of this microorganism, the response is a red-
dened area of induration at the injection site. This reaction results from vasodilation and infiltra-
tion of lymphocytes.

To quantitate antibody in serum, serial dilutions of the serum are made by setting up a
row of test tubes, each containing the same measured volume of saline diluent. A measured quan-
tity of serum is added to the first tube and mixed well. The dilution in this tube is noted (1:2, 1:4,
1:10, or whatever). A measured aliquot of this first dilution is then removed and placed in the sec-

Serological Identification of Patients' Antibodies

267

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

. Diagnostic
Microbiology in Action

11. Microbial Pathogens
Requiring Special
Laboratory Techniques

ond tube, containing measured saline. Material in the second tube is mixed, and an aliquot is re-
moved and placed in the third tube. The procedure is repeated down the line of tubes, so that a
graded series of serum dilutions is obtained. (This procedure is analogous to preparing antimicro-
bial dilutions as in Experiment 15.2.) The antigen is then added in a constant volume per tube.
After allowing time (at the right temperature) for antigen-antibody combination to occur, the
tubes are examined for visible evidence of such combination. The reciprocal of the last (highest)
dilution of serum that produces a visible reaction is reported as the titer of the serum because it in-
dicates the relative quantity of antibody present. If two sera are compared for reactivity with the
same antigen, the one that can be diluted furthest and still show reactivity is said to have the higher
titer, that is, the most antibody.

In serological diagnosis of infectious disease, it is almost always necessary to test two
samples of the patient's serum: one drawn soon after the onset of symptoms during the acute stage,
and another taken 10 to 14 days later. The reason for this is that antibody production takes time to
begin and to build up to detectable concentrations during the course of active infection. The first
sample may show no antibody, or a low titer that could reflect either past infection or previous vac-
cination with the microbial antigen in question. If the second sample shows at least a fourfold or
greater increase in titer as compared with the first, it is evident that current active infection has in-
duced a rising production of antibody. Such laboratory information is of great value both in diag-
nosis and in evaluation of the immunologic status of the patient with respect to any antigen tested.

Purpose

To demonstrate techniques for serological identification of patients' antibodies

Materials

Demonstration material

Results

Review demonstration material and your reading assignments; then complete the following
table.

Infectious Disease

Name of Skin Test
or Serological Test

Interpretation of
Positive Result

Interpretation of
Negative Result

1. Toxoplasmosis

2. Infectious

mononucleosis

Anti-streptolysin

PPD

5. Diphtheria

6. Mycoplasma
pneumonia

VDRL

FTA

Agglutination test

9. Rubella

268

Diagnostic Microbiology in Action

Morello-Mizer-Granato:

I. Diagnostic 11. Microbial Pathogens

Laboratory Manual and Microbiology in Action Requiring Special Companies, 2003

Workbook in Microbiology, Laboratory Techniques
7/e

Questions

1. Describe a doubling serial dilution of six tubes, beginning with a serum dilution of 1:2 in the first tube.

2. Define serum titer.

3. What are acute and convalescent sera? Why must they both be tested in making a serological diagnosis of infectious
disease?

4. Define toxin, antitoxin, and toxoid.

5. Define natural and acquired immunity.

6. What is the difference between an agglutination test and a precipitation test?

7. How do immunological tests for detecting microorganisms or their antigens in patient specimens (see Experiment 21.1)
differ from serological tests to detect antibodies in patient sera?

8. Why is immunity to tuberculosis detected by a skin test rather than by a test for patient's serum antibodies?

9. What is the RPR test?

10. What is the importance of testing for rubella antibodies in women:

Serological Identification of Patients' Antibodies

269

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

IV. Applied (Sanitary)
Microbiology

Text

Part

Applied (Sanitary)
Microbiology

Water supplies, sewage, and food (including milk) are major environmental reservoirs
from which infectious diseases are spread. Throughout the world, public health agen-
cies are responsible for controlling such reservoirs and maintaining their purity through
the application of microbiological standards. In Exercises 34 and 35, some simple
methods for the bacteriologic analysis of water and milk are described.

271

IV. Applied (Sanitary)

Morello-Mizer-Granato:

Laboratory Manual and Microbiology

Workbook in Microbiology,

7/e

Text

Name

Class Date

Exercise <ZL Bacteriological Analysis of Water

The principal means through which pathogenic microorganisms reach water supplies is fe-
cal contamination. The most important waterborne diseases are typhoid fever and other sal-
monelloses, cholera, bacillary and amebic dysentery, and giardiasis. The viral agents of infec-
tious hepatitis and poliomyelitis and the parasite Cryptosporidium are fecal organisms and may
also be spread in contaminated water.

The method for bacteriologic examination of water is designed to provide an in-
dex of fecal contamination. Pathogenic microorganisms do not necessarily multiply in wa-
ter, and therefore they may be present in small numbers that are difficult to demonstrate in
culture. Escherichia coli, other coliform bacteria, and enterococci, however, are not only
abundant in feces but also usually multiply in water, so that they are present in large, readily
detectable numbers if fecal contamination has occurred. Thus, culture demonstration of E.
coli and enterococci in water indicates a fecal source of the organisms. In water from sources
subjected to purification processes (such as reservoirs), the presence of E. coli or enterococci
may mean that chlorination is inadequate. By bacteriologic standards, water for drinking
(i.e., potable water) should be free of coliforms and enterococci and contain not more than
500 organisms per milliliter. The term "coliform," which refers to lactose-fermenting gram-
negative enteric bacilli, is now obsolete except in sanitary bacteriology.

A presumptive test for coliforms is performed by inoculating a sample of water into
tubes of lactose broth containing Durham tubes. After 24 hours of incubation, the tubes are
examined for the presence of acid and gas as an indication of lactose fermentation. Other
than coliforms, few organisms found in water can ferment lactose rapidly with production
of gas. Gaseous fermentation of lactose within 24 to 48 hours provides presumptive evidence
of the presence of coliforms. The test must be confirmed, however, to exclude the possibil-
ity that another type of organism provided the positive lactose result.

The confirmed test is done by plating a sample of the positive lactose broth culture
onto a differential agar medium. Eosin methylene blue (EMB) agar is frequently used.
Coliform colonies ferment the lactose of EMB and consequently have a deep purple color
with a coppery, metallic sheen. This characteristic appearance of the growth provides con-
firmation of the presumptive test.

A completed test requires inoculation of another lactose broth and an agar slant with
isolated colonies from EMB. Gas formation in the lactose broth and microscopic demon-
stration of gram-negative, nonsporing rods on the agar slant are considered complete evi-
dence of the presence of coliform organisms in the original sample.

Total plate counts are also made of water samples to determine whether they meet
the criteria for potability. Instead of performing the broth procedure for the presumptive and
confirmed tests, in some public health laboratories a specified volume of water is passed
through a cellulose membrane filter that retains bacteria. The filter is placed on an agar
medium, such as EMB, the plate is incubated, and then examined for the presence and num-
bers of coliform colonies growing on the filter. In this way, the presumptive and confirmed
tests, as well as the quantitative count are performed simultaneously. The test for the pres-
ence of enterococci is performed similarly by filtration.

In this laboratory session you will perform presumptive, confirmed, and com-
pleted tests for E. coli in water samples.

272

Applied (Sanitary) Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

IV. Applied (Sanitary)
Microbiology

Text

Purpose

To illustrate procedures for bacteriologic examination of water

Materials

Sample of spring water

Sample of tap water

Sterile 1.0-ml pipettes

Lactose broth with Durham tubes

Nutrient agar slants

EMB plates inoculated from a positive presumptive test

Procedures

Note: The entire procedure for the bacteriologic analysis of water requires several days to
complete. Therefore, the instructor will provide some material that has been inoculated and
incubated in advance to conserve classroom time.

A. Presumptive Test

1. Inoculate 1.0 ml of the sample of tap water into a tube of lactose broth. Label the tube "Tap, Presumptive."

2. Repeat procedure 1 with the spring water sample. Label the tube "Spring, Presumptive."

3. Incubate both tubes at 35°C for 24 to 48 hours.

B. Confirmed and Completed Tests

1. Examine the inoculated EMB plate streaked from a positive presumptive test, noting the color of colonies.

2. Pick a coliform type of colony and inoculate it into a tube of lactose broth and onto a nutrient agar slant. Label these tubes
"Coliform, Completed."

3. Pick a colony that is not of coliform type and inoculate it into a tube of lactose broth and onto a nutrient agar slant. Label
these tubes "Noncoliform, Completed."

4. Incubate these cultures at 35°C for 24 to 48 hours.

5. Read all lactose broths for gas formation.

6. Prepare a Gram stain from each agar slant.

Results

Record results of presumptive, confirmed, and completed tests in the following tables

Presumptive Test

Gas from Lactose (+ or -)

Interpretation

Tap water

Spring water

Confirmed Test

Morphology on EMB

Interpretation

Coliform colony

Noncoliform colony

Bacteriological Analysis of Water

273

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

IV. Applied (Sanitary)
Microbiology

Text

Completed Test

Gas from Lactose (+ or -)

Gram-Stain Morphology

Interpretation

Coliform colony

Noncoliform colony

Questions

1 . What is the bacteriologic standard for potable water?

2. Why is bacteriologic analysis of water directed at recognition of coliforms and enterococci rather than isolation of
pathogenic bacteria?

3. Define presumptive, confirmed, and completed tests of water.

4. Why must positive presumptive tests of water be confirmed?

5 . What is the public health significance of coliform-contaminated water?

6. List at least three waterborne infectious diseases.

274

Applied (Sanitary) Microbiology

IV. Applied (Sanitary)

Morello-Mizer-Granato:

Laboratory Manual and Microbiology

Workbook in Microbiology,

7/e

Text

Name

Class Date

Exercise < N Bacteriological Analysis of Milk

Milk is normally sterile as secreted by the lactating glands of healthy animals. From that point on,
however, it is subjected to contamination from two major sources: (1) the normal flora of the
mammary ducts, and (2) flora of the external environment, including the hands of milkers, milk-
ing machinery, utensils, and the animal's coat (human skin in the case of the nursing mother).

The bacterial genera most frequently found in mammary ducts are Streptococcus,
Lactobacillus, and Micrococcus. Species of these are most frequently found in milk and have no path-
ogenic importance. Milk handlers and their equipment may also introduce these and other mi-
croorganisms that are equally harmless, except that their activities in milk may spoil its qualities.

Milk is an excellent medium for pathogenic bacteria also and may be a reservoir of in-
fectious disease. Milkborne infections may originate with diseased animals, or with infected hu-
man handlers who contaminate milk directly or indirectly. Important animal diseases transmitted
to human beings through milk are tuberculosis, brucellosis, listeriosis, andyersiniosis. Streptococcal
infections of animals and Q fever are also transmissible through milk.

Human diseases that may become milkborne via infected milk handlers include strepto-
coccal infections, shigellosis, and salmonellosis. (These diseases, as well as staphylococcal food poi-
soning, can also be transmitted through other foods handled by infected people.)

Pasteurization is a means of processing raw milk before it is distributed to assure that it is
relatively free of bacteria and safe for human consumption. It is a heat process gentle enough to
preserve the physical and nutrient properties of milk, but sufficient to destroy pathogenic mi-
croorganisms (with the possible exception of hepatitis A virus). The two methods most commonly
used for pasteurization of milk are (1) heating at 62.9°C (145°F) for 30 minutes, or (2) heating to
71.6°C (161°F) for a minimum of 15 seconds.

Bacteriologic standards for milk include (1) total colony counts, (2) coliform tests,
(3) cultures for pathogens, and (4) testing for the heat-sensitive enzyme phosphatase, normally pres-
ent in raw milk (this enzyme is destroyed by adequate pasteurization and should not be detectable
in properly processed milk).

In the laboratory session, you will learn how a total colony count of milk is determined.

Purpose To illustrate a method for quantitative culture of milk

Materials Tubes of pasteurized milk diluted 1:10

Tubes of raw milk diluted 1:10
Sterile water blanks (9 ml water per tube)
Sterile tubed agar (9 ml per tube)
Sterile 5.0-ml pipettes
Pipette bulb or other aspiration device
Sterile petri dishes
Thermometer

Bacteriological Analysis of Milk

275

IV. Applied (Sanitary)

Morello-Mizer-Granato:

Laboratory Manual and Microbiology

Workbook in Microbiology,

7/e

Text

Procedures

1. Review Experiment 15.2 for serial dilution technique.

2. Review Exercise 10, procedure A, for pour-plate technique.

3. Set up a boiling water bath. Place four tubes of nutrient agar in it.

4. You will be assigned a sample of either pasteurized or raw milk diluted 1:10, from which you will make further serial
dilutions as follows.

a. Using a sterile 5-ml pipette, transfer 1 ml of the 1:10 milk sample into a water blank (9 ml water). Label the tube
"1:100" and discard the pipette.

b. Use a second sterile pipette to transfer 1 ml of the 1:100 milk dilution to another water blank. Label the new dilution
"1:1,000" and discard the pipette.

c. With a third pipette, transfer 1 ml of the 1:1,000 dilution to a water blank, label it "1:10,000," and discard the pipette.

5. Take four sterile petri dishes. Mark the bottom of each, respectively, 1:10, 1:100, 1:1,000, 1:10,000.

6. With a sterile 5-ml pipette, measure 1 ml of the highest milk dilution (1:10,000) and deliver it into the bottom of the petri
dish so marked.

7. Using the same pipette, repeat step 6 for each diluted milk sample, in descending order of dilution (1:1,000, 1:100, 1:10).

8. If the tubes of agar are melted, remove them from the water bath and place them in a beaker of lukewarm water (about
45°C). Using a thermometer in this cooling water bath, and testing both water and tubes with your hands, make certain
the agar has cooled to 45 °C.

9. Pour each tube of cooled agar into one of the petri dishes containing a milk dilution. Cover the plate and rotate it gently
to assure distribution of the milk in the melted agar.

10. When each poured plate is completely solidified, invert it.

11. Incubate all plates at 35°C for 24 to 48 hours.

Results

1. Count the number of colonies on each plate of your diluted milk sample. For each plate, calculate the number of
organisms per milliliter of milk. Average the four figures and report a final plate count. If the number of colonies on a plate
is too numerous to count (more than 300 per plate), select for counting only those plates that have between 30 and 300
colonies on them. Use these plate counts to perform your calculation.

a. 1:10 plate: # colonies X 1 (ml) X 10 = organisms/ml

b. 1:100 plate: # colonies X 1 (ml) X 100 = organisms/ml

c. 1:1,000 plate: # colonies X 1 (ml) X 1,000 = organisms/ml

d. 1:10,000 plate: # colonies X 1 (ml) X 10,000 = organisms/ml

Final plate count = # organisms/ml, 1:10 plate +

# organisms/ml, 1:100 plate +

# organisms/ml, 1:1,000 plate +

# organisms/ml, 1:10,000 plate +

Total + 4 =

average plate count organisms/ml

2. From your own results and those of your neighbors, report final results for tested milk samples.
Pasteurized milk, total plate count organisms/ml

Raw milk, total plate count organisms/ml

276

Applied (Sanitary) Microbiology

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

IV. Applied (Sanitary)
Microbiology

Text

3. State your interpretation of these results in terms of required bacteriologic standards for grade A milk.

Questions

1. Define pasteurization. What is its purpose:

2. Name some bacteria normally found in milk. How can microorganisms spoil milk products?

3. As a bacteriologic medium, how does milk differ from water? How does milk become contaminated with
microorganisms?

4. What are the bacteriologic standards for commercial milk?

5. Is it advisable for a patient who is to have a throat culture to avoid drinking milk beforehand? Why:

6. From the public health standpoint, what are the hazards of milk and water contamination?

7. List three milkborne diseases of humans that originate in animals.

8. List three milkborne diseases of humans originating in infected milk handlers.

Bacteriological Analysis of Milk

277

Morello-Mizer-Granato:
Laboratory Manual and
Workbook in Microbiology,
7/e

IV. Applied (Sanitary)
Microbiology

Text

IV. Applied (Sanitary)

Morello-Mizer-Granato:

Laboratory Manual and Microbiology

Workbook in Microbiology,

7/e

Text

SELECTED LITERATURE

Alcamo, I. E. 2001. Fundamentals of microbiology. 6th ed. Sudbury, MA: Jones and Bartlett.

American Hospital Formulary Service. 2001. AHFS 01 Drug information. Bethesda, MD: American Society of Health-System Pharmacists.

Anaissie, E. J., McGinnis, M. R., and Pfaller, M. (eds). 2001. Clinical mycology. Philadelphia: Churchill Livingstone.

Ash, L. R., and Orihel, T. C. 1997. Atlas of human parasitology. 4th ed. Chicago: American Society of Clinical Pathology.

Bennett, J. V, and Brachman, P. S. 1998. Hospital infections. 4th ed. Philadelphia: Lippincott Williams &Wilkins.

Black, Jacquelyn. 1999. Microbiology : Principals and explorations. 4th ed. New York: Wiley.

Block, S. S. (ed.). 2000. Disinfection, sterilization and preservation. 6th ed. Philadelphia: Lippincott Williams & Wilkins.

Chin, J. (ed.). 2000. Control of communicable diseases in man. 17th ed. Washington, DC: American Public Health Association.

Clesceri, L. S., and Eaton, A. D. 1999. Standard methods for examination of water and wastewater. 20th ed. Washington, DC: American Public

Health Association.
Dormandy, T. 2000. The white death: A history of tuberculosis. New York: New York University Press.
Doyle, M. P., Beuchat, L. R., and Montville, T. J. (eds.). 2001. Food microbiology : Fundamentals and frontiers. 2nd ed. Washington, DC: ASM

Press.
Evans, A. S., and Brachman, P. S. (eds.). 1998. Bacterial infections of humans: Epidemiology and control. 3rd ed. New York: Plenum.
Forbes, B. A., Sahm, D. E, andWeissfeld, A. S. 2002. Bailey & Scoffs diagnostic microbiology. 11th ed. St. Louis: Mosby
Galasso, G. J. , Whitley, R. J., and Merigan, T. C. (eds.). 1997. Antiviral agents and human viral diseases. 4th ed. Philadelphia: Lippincott Williams

& Wilkins.
Garcia, L. S., and Bruckner, D. A. 2001. Diagnostic medical parasitology. 4th ed. Washington, DC: ASM Press.
Gerhard, P. 1993. Methods for general and molecular bacteriology. Washington, DC: ASM Press.

Holmes, K. K., Sparling, E, Mardh, P-A., and Wasserheit, J.(eds.). 1998. Sexually transmitted diseases. 3rd ed. St. Louis: McGraw-Hill.
Hugh-Jones, M. E., Hagstad, H.V., and Hubbert, W. T. 2000. Zoonoses: Recognition, control, and prevention . Ames, IA: University of Iowa Press.
Isenberg, H. D. (ed.). 1997. Essential procedures for clinical microbiology. Washington, DC: ASM Press.
Janeway, C. (ed.). 2001. Immunobiology : The immune system in health and disease. 5th ed. New York: Garland.
Kaufmann, S. H. E., Sher, A., and Ahmed, R. 2001. Immunology of infectious diseases. Washington, DC: ASM Press.
Kee, J. L. 2001. Handbook of laboratory and diagnostic tests with nursing implications. 4th ed. Upper Saddle River, NJ: Prentice Hall.
Koneman, E. W, Allen, S. D., Janda,W M., Schreckenberger, P. C, and Winn, W C. 1997. Color atlas and textbook of diagnostic microbiology.

5th ed. Philadelphia: Lippincott.
Kwon-Chung, K. J., and Bennett, J. E. 1992. Medical mycology. Philadelphia: Lea & Febiger.
Larone, C. D. 1995. Medically important fungi. A guide to identification. 3rd ed. Washington, DC: ASM Press.
Leboffe, M. J., and Pierce, B. E. 1999. Photographic atlas for the microbiology lab. 2nd ed. Englewood, CO: Morton.
Mandell, G. L., Bennett, J. E., and Dolin, R. 2000. Mandell, Douglas, and Bennett's principles and practice of infectious diseases. 5th ed.

Philadelphia: Churchill Livingstone.
Markell, E. K., John, D. T., and Krotoski, W A. 1999. Markell and Voge's medical parasitology. 8th ed. Philadelphia: Saunders.
Mayhill, C. G. (ed.). 1999. Hospital epidemiology and infection control. Baltimore: Lippincott Williams & Wilkins.
McFeters, G. A. (ed.). 1990. Drinking water microbiology: Progress and recent developments. New York: Springer Verlag.
The Medical Letter handbook of antimicrobial therapy. 2000. Rochelle, NY: The Medical Letter, Inc.
Mims, C. 2001. The pathogenesis of infectious disease. 5th ed. New York: Academic Press.

Morello, J., Mizer, H. E., Wilson, M. E., and Granato, P. A. 1997. Microbiology in patient care. 6th ed. St. Louis: WCB/McGraw Hill.
NCCLS. 2002. Performance standards for antimicrobial susceptibility testing '.Twelfth informational supplement, Ml 00-S12. Wayne, PA: NCCLS.
Nester, E.W., Anderson, D. G., Roberts, Jr., C. E., Pearsall, N. N., and Nester, M. T. 2001. Microbiology : A human perspective. 3rd ed. New

York: McGraw-Hill.
Neva, F. A., and Brown, H. W. 1996. Basic clinical parasitology. 6th ed. St. Louis: McGraw-Hill.
Parslow, T. G., Stites, D. P., and Abba, I. (eds.). 2001. Medical immunology. 10th ed. St. Louis: McGraw-Hill.
Paul, W. E. 1999. Fundamental immunology. 4th ed. New York: Lippincott Williams & Wilkins.
Rose, N. R. (ed.). 2002. Manual of clinical laboratory immunology. 5th ed. Washington, DC: ASM Press
Smith, E., Beneke, A. L., and Rogers, F. 1996. Medical mycology and human mycoses. Belmont, CA: Star.
Sompayrac, L. M. 1999. How the immune system works. Boston: Blackwell.

Specter, S. C, Hodinka, R. L., and Young, S. A. 2000. Clinical virology manual. 3rd ed. Washington, DC: ASM Press.
Tortora, G. J., and Funke, B. R. 2000. Microbiology : An introduction. 7th ed. San Francisco: Benjamin/Cummings.
Walker, J. T., Hunter, P. R., and Percival, S. L. 2000. Microbiological aspects ofbioflms and drinking water. Boca Raton, FL: CRC Press.

Morello-Mizer-Granato:

Back Matter

Index

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

INDEX

Note: Page numbers followed by f refer to illustrations; page numbers followed by t refer to tables

Absidia, 248t

Accidents, 5

Acinetobacter baumannii, 1 92t

Acinetobacter Iwojfi, 192t

Actinomyces, 225t

Adenovirus, cell culture of, 240, 240f

African sleeping sickness, 25 9t

Agar disk diffusion method, for susceptibility testing, 95—97,

96t, Plate 14
Agar medium, 54—55, 55f
Agar plate

pour-plate technique for, 65—67, 66f

streaking technique for, 59-62, 60f, 61f

subculture technique for, 65-66
Agglutinins, 267
Alcaligenes faecalis, 192t
Amebae, 257, 25 8f, 259t
Amplification assays, 138, 139f
Anaerobic bacteria, 222—229, 224t, 225t
Anaerobic jar, 222, 223f
Anaerobic pouch, 222, 224f
Antibodies, 267-268

Antigen detection assays, 131-136, 133f, 134f, 135f, 136f
Antimicrobial agents

bacterial resistance to, 99-103, lOOf, 102f

chemical, 89-92, 91 1

physical, 75-87, 82f, 82t, 83f

susceptibility testing for, 95-103, 96t, 99f, lOOf, 102f. See
also Susceptibility testing
Antitoxins, 267
API strip, 194, 195, Plate 36
Apicomplexa, 257, 258f, 259t
Ascaris lumbricoides, 26 It, 262f
Asepsis, 3—4

Aspergillus jlavus, Plate 42, Plate 45
Aspergillus fumigatus, 248t, Plate 42, Plate 44
Aspergillus niger, Plate 42
Autoclave, 81-85, 82f, 82t, 83f

Bacilli, 33, 34f

enteric. See Enterobacteriaceae

Bacillus spp., Plate 8

Bacillus stear other mophilus, autoclave sterilization of,

83-85, 83f
Bacillus subtilis, starch hydrolysis in, 118—119, 118f
Bacitracin test, Plate 29
Bacteria. See also specific organisms

acid-fast stain for, 43—45

anaerobic, 222-229, 224t, 225t

capsules of, 47, 50—51

endospores of, 48-50, 49f

enzymes of, 123-128, 124f, 126f

flagella of, 47-48, 48f, 50-51

metabolic activity of, 117-120, 118f, 120f

shapes of, 33, 34f

viral invasion of, 242—243, 243f
Bacteriophages, 242-243, 243f
Bacteroides, 22 5 1

Balantidium coli, 257 ', 258f, 259t
Bifidobacterium, 22 5 1
Biohazards, 5

Blastomyces dermatitidis, 248t, 253t, Plate 48
Blood agar plate, 113t
Blood flukes, 261t
Bordetella pertussis, 171—172
Borrelia, 217
Botulism, 225t, 226
Broth dilution method, for susceptibility testing, 97—99, 99f

Calcofluor white, 250

CAMP test, 154-155, Plate 30

Campylobacter jejuni, 188, Plate 6

Candida albicans, 248t, 250, 25 If, 252—253, 253t, Plate 41

Candle jar, 157, 158f

Capsules, bacterial, 50-51

Carbohydrate fermentation, 117—118, Plate 18

Catalase, 124-125, 124f

Cestodes, 260

Chagas disease, 259t

Chlamydia trachomatis, Plate 40

Chlamydiae, 238

Chlorine, 91t

Chocolate agar, 113t

Index

281

Morello-Mizer-Granato:

Back Matter

Index

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

Ciliates, 257

Citrobacter, 189t

Cladosporium, 248t, 253t

Cleaning, 3—4

Clonorchis sinensis, 26 It, 262f

Clostridium spp., 225—228, 225t

Clostridium botulinum, 225t, 226

Clostridium difficile, Plate 25

Clostridium perfringens, 225, 225t

Clostridium tetani, 225t, 226

Coagulase test, Plate 26

Cocci, 33, 34f

Coccidia, 257, 259t

Coccidioides immitis, 248t, 249, 249f, 253t

ColiphageT2, 242-243, 243f

Commensals, 110

Cory neb acterium spp., 168-170

Cryptococcus neoformans, 248t, 250, 253t, Plate 43

Cryptosporidium, 257 ', Plate 53

Cryptosporidium parvum, 259t

Culture, 15—22. See also specific organisms

for environmental monitoring, 69—70

examination of, 19, 21—22

growth patterns of, 16f

incubation of, 19

media for, 54-55, 55f, 112-113, 113t

plate, to nutrient broth and agar slant, 19, 20f

pour-plate technique for, 65—67, 66f

precautions for, 108—109

slant

to nutrient agar slant, 18—19, 19f
to nutrient broth, 17-18, 17f, 18f

specimen collection for, 107—108

streaking technique for, 59-62, 60f, 61f

subculture technique for, 65—66
Curvularia, 253t
Cyclospora, 257
Cystitis, 206

Deaminase, 127—128
Deoxyribonuclease, 126—127, Plate 21
Dermatophytes, Plate 47
Diagnostic microbiology, 107—139

antigen detection assays for, 131—136, 133f, 134f,
135f, 136f

enzyme tests for, 123-128, 124f, 126f

media for, 112-115, 113t

metabolic tests for, 117-120, 118f, 120f

nucleic acid detection assays for, 136—139, 137f, 139f

specimen collection for, 107—108

specimen handing for, 108—109

Diphyllobothrium latum, 26 It, 262f, Plate 54

Diplococci, 33, 34f

Disinfectants, 90-92, 91 1

DNase, 126-127

DNase test, Plate 21

Durham tube, 117-118, Plate 18

Dysentery, 259t

Echinococcus granulosus, 26 It, Plate 55
Ehrlichia spp., 237—238
Encephalitozoon, 257
Endospores, stains for, 48—50, 49f
Entamoeba histolytica, Plate 50
Enterobacter, 189t
Enterobacteriaceae, 184—196

antimicrobial susceptibility testing of, 202—203

fecal sample for, 199-200

identification of, 185-187, 190-196, 200-201

IMViC reactions for, 186

isolation techniques for, 187-190, 188f, 189t

vs. nonfermentative gram-negative bacilli, 192—193, 192t

rapid identification of, 193—196

serological identification of, 191—192
Enterobius vermicularis, 26 It, 262f
Enterococcus spp., Plate 32

identification of, 153t, 159-161, 161f
Enterococcus faecalis, 1 5 9—1 6 1

catalase test of, 124-125, 124f
Enterocytozoon, 257
Enterotube II, 194, 195, Plate 36
Environment, culture monitoring of, 69—70
Enzyme(s), 123-128, 124f, 126f

in antimicrobial resistance, 99—101, lOOf
Enzyme immunoassay, 133, 135f, 136, 136f, Plate 25
Eosin methylene blue agar, 113t
Epidermophyton floccosum, 247, 253t
Escherichia coli, 189t, Plate 16, Plate 17, Plate 22

mutation in, 101-103, 102f
Esculin reaction, Plate 32
Espundia, 259t
Eubacterium, 225t

Fasciola hepatica, 262f

Fasciolopsis buski, 26 It, 262f

Fecal sample, 199-200

Fermentation, carbohydrate, 117—118

Filter paper disk agar diffusion method, for susceptibility

testing, 95-97, 96t, Plate 14
Flagella, 47-48, 48f, 50-51
Flagellates, 257, 258f, 259t

282

Index

Morello-Mizer-Granato:

Back Matter

Index

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

Flatworms, 260

Flukes, 260, 261t

Fluorescent antibody test, 132, 133f

Fonsecaea, 248t, 253t

Formaldehyde, 91 1

Fungi, 247-254, 248t, 249f, 25 If, 252t, 253t

culture of, 250

direct smears for, 249-250

microscopic examination of, 249, 249f

Scotch tape preparation for, 251, 252f

stains for, 250
Fusobacterium, 22 5 1

GasPakjar, 222, 223f

Gelatin strip test, 125—126, 126f

Gelatinase, 125—126, 126f

Genital tract, 213-218, 213t, 214f, 215f

Germ tube test, 250, 25 If, 252-253

Giardia lamblia, 257 ', 25 8f, 259t, Plate 51

Glutaraldehyde, 91t

Gonorrhea, 213-216, 213t, 214f, 215f, Plate 4, Plate 13,

Plate 37, Plate 38
Gram stain, 38—40

Haemophilus spp., identification of, 165—167, 167f

Haemophilus influenzae, 165—167, 167f, Plate 34, Plate 35

Handwashing, 3—4

Hanging-drop preparation, 26—28, 26f

Heat, 75

dry, 77-78

moist, 76-77
Hektoen enteric agar, 113t
Hektoen enteric agar plate, Plate 17
Helminths, 259-264, 260f, 261t, 262f

tissue, 263
Histoplasma capsulatum, 248t, 253t
Hydrogen peroxide, 91 1
Hydrogen sulfide, 119-120, Plate 19
Hymenolepis diminuta, 262f
Hymenolepis nana, 262f

Icterohemorrhagia, 217

Immunoassays, 131—136, 133f, 134f, 135f, 136f

Immunofluorescence assay, 132, 133f

Incineration, 78

India ink, 250

Indole, 119-120

Infant botulism 225t, 226
Intestinal fluke, 26 It

Intestinal tract, 183—202. See also Enterobacteriaceae

parasitic infections of, 261—262

specimen from, 199—203
Iodophors, 91t
Isopropyl alcohol, 91t
Isospora, 257

JEMBEC plate, Plate 38

Kala-azar, 25 9t

Kinyoun stain, 43

Kirby-Bauer method, for susceptibility testing, 95—97, 96t

Klebsiella, 189t

Klebsiella pneumoniae, Plate 5, Plate 12

Kligler iron agar slants, Plate 19

KOH preparation, 249, 249f, Plate 47

Ko vac's reagent, 119

Lactophenol cotton blue coverslip preparation, Plate 44,

Plate 48
Latex agglutination assay, 132, 134f, Plate 24
Legionella pneumophila, Plate 23
Leishmaniasis, 259t
Leptospira interrogans, 217—218
Leptotrichia, 225t
Liver fluke, 26 It
Lockjaw, 226

Lowenstein-Jensen slants, Plate 39
Lung fluke, 26 It
Lyme disease, 217

M
MacConkey agar, 113t
MacConkey agar plate, Plate 16
Madurella, 248t, 253t
Malaria, 258f, 259t, 262-253, Plate 52
Mannitol salt agar, 113t
Media, 54-55, 112-115, 113t

differential, 112, 113t

selective, 112, 113t

SIM, 119-120, 120f
Meningitis, 213, 213t, 214-215
Methenamine silver stain, Plate 45, Plate 46
MicroScan, 194, 196
Microscope, 6—13

adjustment of, 8—10, 9f

care for, 1 1

carrying of, 8f

components of, 6—8, 7f

Index

283

Morello-Mizer-Granato:

Back Matter

Index

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

Microscope — Cont.

focusing of, 10—11

troubleshooting for, 12t
Microspora, 257, 259t
Microsporum spp., 247, 253t
Milk, bacteriological analysis of, 275—276
Minimum inhibitory concentration, 97—99, 99f
Modified Thayer-Martin agar, 113t
Molds, 250-251, 253t
Monoclonal antibody, 132
Motility test, 119-120, 120f
Mouth, culture from, 60, 60f
Mucor, 248t

Mutation, in antimicrobial resistance, 101-103
Mycobacterium spp., 231-234, 23 It
Mycobacterium kansasii, Plate 39
Mycobacterium tuberculosis, 231-234, 23 It, Plate 9, Plate 39

culture of, 233—234

microscopic morphology of, 232—233
Mycoplasmas, 236—237

Mycoses, 247-254, 248t, 249f, 25 If, 252t, 253t. See also
Fungi

N
Necator americanus, 26 It
Neisseria spp., 213-216, 213t, 214f, 215f
Neisseria gonorrhoeae, 213—216, 213t, 214f, 215f, Plate 4,

Plate 13, Plate 37, Plate 38
Neisseria meningitidis, 213, 213t, 214—215
Nematodes, 260
Neutralization, 267
Normal flora, 109-110

staphylococci in, 145—146

streptococci in, 161—162, 161f
Nosema, 257

Novobiocin disk test, Plate 27
Nucleic acid detection assays, 136—139, 137f, 139f
Nutrient agar plate

streaking technique for, 59-62, 60f, 61f

subculture technique for, 65—66
Nutrient broth, 54-55

Opsonins, 267
Optochin test, Plate 31

Paracoccidioides brasiliensis, 248t, 253t
Paragonimus westermani, 26 It, 262f
Pasteurization, 275
PDase test, Plate 22
Penicillinase, 99-101, lOOf

Peptostreptococcus, 22 5 1

Personal safety guidelines, 4—5

Phenol red agar slants, Plate 37

Phenolic, 91 1

Phenylalanine deaminase test, Plate 22

Phenylethyl alcohol agar, 113t

Phialophora, 248t, 253t

Plasmodium spp., 257, 25 8f, 259t, 262—253

Plasmodium falciparum, Plate 52

Plasmodium vivax, Plate 52

Platyhelminths, 260

Pleistophora, 257

Pneumococci, identification of, 153t, 156—159, 158f

Pneumocystis carinii, Plate 46

Pneumonia, 177—178

Polymerase chain reaction assay, 138, 139f

Pour-plate technique, 65—67, 66f

Precipitins, 267

Prevotella, 225t

Prions, 242

Probe assays, 137—138

Propionibacterium, 225 1

Proteus, 189t

Protozoa, 257-259, 25 8f, 259t, 262-263

Providencia, 189t

Providencia stuartii, Plate 22

Pseudallescheria, 248t, 253t

Pseudomonas aeruginosa, 192-193, 192t, Plate 15

Pyelonephritis, 206

PYR test, 159-160, Plate 33

Quaternary ammonium compounds, 91 1
Quellung reaction, 47, Plate 10

Relapsing fever, 217

Resistance, antimicrobial, 99—103, lOOf, 102f

Respiratory tract, 141-179

Bordetella infection of, 171—172
Cory neb acterium infection of, 168—170
Enterococcus infection of, 159—161, 16 If
Haemophilus infection of, 165—167, 167f
pneumococcal infection of, 156—159, 158f
specimen from, 175—179
Staphylococcus infection of, 142—146, 143f
Streptococcus infection of , 149—155, 15 If, 153t, 158f

Rhino cladiella, 248t

Rhizopus, 248t

Rickettsiae, 237-238

Ringworm, 247, Plate 47

Roundworms, 260, 26 It

284

Index

Morello-Mizer-Granato:

Back Matter

Index

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

Safety, 3-5, 109

Salmonella, 189t, 190-191, Plate 16, Plate 17

Saprophytes, 110

Satellite test, Plate 34

Schistosoma spp., 26 It

Schistosoma hematobium, 262f

Schistosoma japonicum, 262f

Schistosoma mansoni, 262f

Scotch tape preparation, 251—254, 252f

Serology, 267-268

Serratia, 189t

Sexually transmitted diseases, 213—218, 213t, 214f, 215f

Shigella, 189t, 190-191

SIM (sulfide, mdole, and motility) medium, 119—120, 120f

Sore throat, 175—176

Specimen

collection of, 107-108

handling of, 108-109

urine, 207
Spirilla, 33, 34f

Spirochetes, 33, 34f, 217-218, Plate 7
Sporothrix schenckii, 248t, 25 3 1
Stain (s)

acid-fast, 43—45

capsular, 47

for capsules, 50—51

for endospores, 48—50, 49f

forflagella, 50-51

Gram, 38-40

negative, 47

simple, 33—35
Standard precautions, 108—109
Staphylococcus spp., 142—146, 143f

identification of, 142-145, 143f

in normal flora, 145—146
Staphylococcus aureus, 142—146, 143f, Plate 1, Plate 26,

Plate 30
Staphylococcus epidermidis, 142—146, Plate 27

catalase test of, 124-125, 124f
Staphylococcus saprophyticus, 142—146, Plate 27
Starch hydrolysis, 118-119, 118f
Steam temperature, 81, 82t
Steam-pressure sterilization, 81—85, 82f, 83f
Sterilization, 75-87, 82f, 82t, 83f
Streaking technique, 59—62, 60f, 6 If
Strep throat, enzyme immunoassay for, 136, 136f
Streptococcus spp., 149-155, Plate 28, Plate 29, Plate 30,
Plate 32

alpha-hemolytic, 150

beta-hemo lytic, 150

CAMP test for, 154-155

enzyme immunoassay for, 150, 15 If

hemolysins of, 149

identification of, 150-155, 153t, 154f

latex agglutination test for, 150, 15 If

in normal flora, 161—162, 161f
Streptococcus agalactiae, 150, 153t, Plate 30
Streptococcus equisimilis, 153t
Streptococcus pneumoniae, 153t, 156—159, 158f, Plate 3,

Plate 3 1
Streptococcus pyogenes, 150, 153t, Plate 2, Plate 11, Plate 29
Subculture technique, 65—66
Susceptibility testing, 95-103, 96t, 99f, lOOf, 102f,
178-179, 202-203

agar disk diffusion method for, 95—97, 96t, Plate 14

broth dilution method for, 97-99, 99f
Syphilis, 217, Plate 7

Taenia, 262f

Taenia saginata, 26 It

Taenia solium, 26 It

Tapeworms, 260, 26 It

Tetanus, 226

Thayer-Martin agar, modified, 113t

Thermal death point, 76

Thermal death time, 76

Throat culture, 161-162, 16 If

Tinea capitis, Plate 47

Tinea corporis, Plate 47

Toxoplasma gondii, 257, 263

Toxoplasmosis, 259t

Transparent tape preparation, 251—254, 252f

Trematodes, 260

Treponema pallidum, 217, Plate 7

Trichinella spiralis, 26 It

Trichomonas vaginalis, 257 ', 25 8f, 259t, Plate 49

Trichophyton spp., 247, 253t

Trichostrongylus, 262f

Trichuris trichiura, 26 It, 262f

Trypanosoma spp., 25 8f, 25 9t

Tuberculosis, 231-234, 231t, Plate 9, Plate 39

Universal precautions, 108—109

Ureaplasmas, 236-237

Urease, 123-124

Urease test, Plate 20

Urinary tract infection, 206—211

Urine

qualitative culture of, 206—211
quantitative culture of, 209—211
specimen of, 207

Index

285

Morello-Mizer-Granato:

Back Matter

Index

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

V
Veillonella, 22 5 1
Vibrio, 188-189
Viruses, 238-242, 239t

cell culture of, 240-241, 240f

cyto histological examination for, 241

electron microscopy for, 241

immunologic assays for, 241

serology for, 241—242

Water, bacteriological analysis of, 272—274
Weil's disease, 217

Wet-mount preparation, 29—30, 29f
Worms, 259-264, 260f, 261t, 262f
Wuchereria, 26 It

Yeasts, 250, 253t
Yersinia, 189t

Ziehl-Neelsen stain, 43

286

Index

Morello-Mizer-Granato:

Back Matter

Figures

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

fl <*■& fp,

*•*

Plate 1 Staphylococcus aureus in a Gram-stained smear from a colony growing on agar medium (left) and from the sputum of a
patient with staphylococcal pneumonia (right). The organisms are gram-positive spheres, primarily in grapelike clusters. The pink
cells in the right-hand photo are neutrophils.

■ " * K

>~<v»

•

<► 1

*-,"

Plate 2 Streptococcus pyogenes in Gram-stained smears. From a culture plate (left), the gram-positive organisms appear singly,
in chains, and in clumps. In broth culture media (center), the characteristic long chains are seen. In a smear from an abscess
(right), the organisms are primarily gram-positive cocci in long chains.

*$ ,r *x

.*>%

&'.

if'

■

,&.

Plate 3 Streptococcus pneumoniae in Gram-stained smears. The organisms from
a colony growing on agar medium (left) are gram positive and lancet shaped and
appear in pairs and short chains. In a Gram stain of cerebrospinal fluid from a patient
with pneumococcal meningitis (right), the organisms are mostly diplococci. The
capsule (arrow) can be seen around some bacteria, outlined by the pink
proteinaceous material of the fluid.

Plate 4 Neisseria gonorrhoeae in a
Gram-stained smear from a male
urethral exudate appear as gram-
negative, bean-shaped diplococci.

Morello-Mizer-Granato:

Back Matter

Figures

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

Plate 5 Gram-negative bacilli (Klebsiella pneumoniae) in a Gram
stained smear from an agar colony (left) and a patient's blood
culture (right). In the blood specimen, the organisms are
pleomorphic, varying in length from coccobacillary to filamentous.

Plate 6 Curved, spiral,
gram-negative bacilli
(Campylobacter jejuni) in
a Gram stain from
culture. Some bacteria
line up to form spirilla like

Chains. Courtesy Dr. E. J.
Bottone

Plate 7 Spirochetes
(Treponema pallidum)
appear black (arrows) in a
skin preparation stained
with a silver stain, courtesy

Dr. E. J. Bottone

Plate 8 Bacillus spp. are gram-positive bacilli
with endospores. Endospores appear as clear
areas within the vegetative bacterial cell (arrows).

Plate 9 Mycobacterium tuberculosis in an acid-fast stain of sputum
(left). The acid-fast bacilli appear as red, beaded rods against a blue
background (X1 ,000). Strains of M. tuberculosis often form ropy "cords"
(center), which is considered an indication of virulence. When stained
with a fluorescent dye, acid-fast bacilli fluoresce brightly against a dark
background (right, X400).

Plate 10 The quellung reaction. The halo
around the cells is the pneumococcal
capsule, which appears to swell when the
cells are treated with pneumococcal

antiserum. Courtesy Dr. E. J. Bottone

Plate 1 1 Streptococcus
pyogenes growing on a blood agar
plate. The clear beta-hemolytic
areas surrounding the punctate
colonies are caused by a
streptolysin enzyme.

Plate 12 The large capsule of
Klebsiella pneumoniae gives a
mucoid appearance to colonies
growing on agar plates. Courtesy

Dr. E. J. Bottone

Morello-Mizer-Granato:

Back Matter

Figures

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

Plate 13 Neisseria gonorrhoeae colonies on chocolate agar. The oxidase-
positive organisms become deep purple when a drop of oxidase reagent is
added to an area of the plate (right).

JttltltSf O

>|0 © )

951 ?<1 lil tl4

L i'l U-lfiji-

U 2 t

> * f ' ...»

■e

■* j

■ -i j;

J.-S

J i>

» 'I

)

9 9 ©

©I® K.0 £,

tt ? j *t ' W Tiff B? i*?f

• t ; J J)

<*•# # • Q u

^ * * ^ Eta

■

* /* ^

ft 1 '$

Plate 15 A microdilution susceptibility test of
Pseudomonas aeruginosa. The green color
signifies growth of the organism with
production of its soluble green pigment.
Growth occurs in the wells containing
concentrations of antimicrobial agents to
which the organism is resistant.

Plate 18 When Durham tubes are placed
inside broth tubes, gas produced by
fermentation of carbohydrates in the medium
can be visualized as a bubble in the inner
tube (left). The organism on the right does not
produce gas when fermenting carbohydrates.

Plate 14 A disk diffusion antimicrobial
susceptibility test. If the clear zones of
growth inhibition around disks are of a
certain diameter, the organism is susceptible
to the antimicrobial agent in the disk.

Plate 16 A MacConkey agar plate
with Escherichia coli (pink, lactose-
fermenting colonies) growing on the
left-hand side and a Salmonella sp.
(colorless, lactose nonfermenting
colonies) on the right, courtesy Dr. e. j

Bottone.

Plate 1 7 Escherichia coli (left) and
Salmonella sp. (right) on a Hektoen
enteric agar plate. The lactose-
fermenting E coli colonies appear
yellow, whereas the Salmonella
colonies appear black because of
hydrogen sulfide production.
Compare with reactions on
colorplate 1 6 and note how selective
and differential media display
different organism characteristics.

*-KI, 5 Ih,

■'.:■ •■ '.

&rr"xif:''l:H
ipiKjiiai: ■
ir ^pi#: i! •*»■
itC ■:•:■=:

ai.:: ciian-i p
••-!*■■:■ 5r-"ip*;r
. !i::jri : j r l,

■ CWJUinHk
■H. vntTltoF

:
-

Plate 19 Kligler iron agar slants test for fermentation of glucose and lactose
and the production of gas and hydrogen sulfide. The organism on the left
ferments both glucose and lactose with gas production (bubbles in medium).
The organism in the middle ferments glucose (yellow butt) but not lactose
(pink slant). The organism on the right ferments glucose (with gas production)
but not lactose, and blackens the agar as a result of hydrogen sulfide
production. Reactions are similar on TSI slants.

Morello-Mizer-Granato:

Back Matter

Figures

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

Plate 20 Urease test. The organism
on the right produces the enzyme
urease, which imparts the bright pink
alkaline reaction to the urea agar slant

Courtesy Dr. E. J. Bottone.

Plate 23 Fluorescent antibody
preparation of Legionella pneumophila
viewed microscopically with an
ultraviolet light source. After the patient
specimen is treated with an antibody
conjugated with a fluorescent dye, the
brightly fluorescing bacilli are easily
visible against the dark background.

Plate 26 Coagulase test. The tube of
plasma on the right was inoculated with
Staphylococcus aureus. A solid clot has
formed in this tube in comparison to the
still liquid plasma in the uninoculated

tube On the left. Courtesy Dr. E. J. Bottone.

Plate 21 DNase test. When a plate
containing DNA is flooded with
toluidine blue, the colony of
deoxyribonuclease-producing
organisms (top) and the surrounding
area of hydrolyzed DNA become pink.

Orion Diasiiostica

Plate 24 Latex agglutination reaction.
Antibody-coated latex particles have
been mixed with the positive (well 1) and
negative (well 2) controls and the
organism isolated from the patient (well
3). The dark blue rims of the positive
control and patient mixtures represent
the positive reaction of agglutinated latex
particles. Well 6 is an additional control.

■■ ■■* **. • jn a .
l?r-.*.¥w.

I. I.I. u

£F. " l*i it, ,
■£.-- -yaii

Plate 22 Phenylalanine deaminase
(PDase) test. The PDase-producing
Providencia stuartii (left) hydrolyzes
phenylalanine in the culture medium.
After ferric chloride is added to the
slant, the green positive reaction
appears. In the middle is the PDase-
negative Escherichia coli; the tube on
the right is uninoculated.

Plate 25 A direct enzyme
immunoassay for Clostridium difficile
toxin. The wells have been coated with
antibody against the toxin and
suspensions of patient fecal specimens
added. The first well in row A and the
second wells in rows G and H are
strongly positive, whereas the second
well in row E shows a weakly positive
reaction. In the third column, positive
(row A) and negative (row B) controls
are shown. Refer to figure 19.3 for
details of the test.

Plate 27 Novobiocin disk test for differentiating two coagulase-negative species of
staphylococci: Staphylococcus saprophyticus (left) and Staphylococcus epidermidis
(right). The zone of inhibition around S. saprophyticus is less than 16 mm, which
identifies this species by its resistance to the antibiotic.

Morello-Mizer-Granato:

Back Matter

Figures

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

Plate 28 Subsurface colonies of alpha- (left), beta- (center), and nonhemolytic (right) streptococci. Note many intact red cells and
a greenish color around the alpha-hemolytic colonies. Hemolysins produced by beta-hemolytic colonies have completely
destroyed surrounding red cells. Nonhemolytic organisms produce no change in the red cells.

i^H ^^^^^^^^^

■

1 s

H^b

1 &

■

■■

L 1

w ^

]

^^M>

E \

■ ^

■

i H

■

hni

■

v^ ■

|H J H

■

.. jy

i ^^«_

■

i > n

Hb^

^" ■*" .-JMJ

BS^H

■

Plate 29 Bacitracin test. The
organism on the left is identified
presumptively as Streptococcus
pyogenes (group A), because it shows
a zone of growth inhibition around the
bacitracin disk. The bacitracin-resistant
organism on the right is a beta-
hemolytic streptococcus other than

group A. Courtesy Dr. E. J. Bottone.

Plate 30 CAMP test. When a group B
streptococcus (Streptococcus
agalactiae) is streaked at right angles to
a hemolytic Staphylococcus aureus
(long straight streak down middle of
plate), areas of synergistic hemolysis in
the shape of a beta-hemolytic arrow are

formed. Courtesy Dr. E. J. Bottone.

Plate 31 Optochin test. A zone of
inhibition forming around a disk
containing optochin (P disk) identifies
this organism presumptively as
Streptococcus pneumoniae.

;>.: *B'-fl«?7:-

HlMu

nin? ibj

Plate 32 Esculin reaction. The
Enterococcus sp. on the left has
hydrolyzed esculin with resulting
blackening of the medium. The
Streptococcus sp. on the right does
not hydrolyze esculin.

■

Plate 33 PYR test. The appearance
of a red color at the completion of the
test indicates that the organism on the
right is PYR positive.

Plate 34 Satellite test. Colonies of
Haemophilus influenzae, which requires
both X and V factors, grow only around
a Staphylococcus aureus streak on a
blood agar plate. The blood provides
the needed X factor (hemin) and the
staphylococcus, V factor (a coenzyme,
NAD).

Morello-Mizer-Granato:

Back Matter

Figures

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

ST i M~ ' *

1 , 1

— ■■■ ■

1 II ■ f 1

If 1 c «

^^^^™«r^^^p

^fc» 1 ~^^— J»- - -^

Plate 35 Haemophilus ID Quad Plate
inoculated with Haemophilus
influenzae. The organism grows only on
the top two quadrants, which contain
media supplemented with X and V
factors (left) and 5% blood and V factor
(right).

Plate 36 Rapid bacterial
identification. In the Enterotube II (top)
and API strip (bottom), many reactions
are tested simultaneously allowing
definitive organism identification within
24 hours.

Plate 37 Phenol red agar slants
containing glucose, maltose, sucrose,
and fructose inoculated with oxidase-
positive, gram-negative diplococci.
Only the first tube (glucose) shows a
positive reaction, indicating the
organism is Neisseria gonorrhoeae.

Plate 38 The JEMBEC plate is used primarily when genital
specimens for culture must be transported long distances to
the microbiology laboratory. After the white C0 2 -generating
tablet (top right) is placed in the well in the rectangular culture
plate, the plate is sealed in the plastic zip-lock bag. C0 2
accumulates, providing the appropriate atmosphere for
growth of Neisseria gonorrhoeae.

Plate 39 Growth of Mycobacterium spp. on Lowenstein-
Jensen slants. The green tube on the left is uninoculated. The
tube in the center has the characteristic dry, heaped, and
rough growth of M. tuberculosis. The tube on the right shows
the yellow pigmented growth of the photochromogen, M.
kansasii.

Plate 40 Inclusions of Chlamydia trachomatis in cell culture
The glycogen-containing inclusions stain dark brown when
the cells are treated with an iodine solution (left), courtesy Dr.
e. j. Bottone. When stained with fluorescein-labeled anti-
Chlamydia antibody (right), the inclusions fluoresce brightly
against a dark background when viewed with a fluorescence
microscope.

•

Plate 41 Gram stain of Candida albicans cells isolated from
the blood culture of a patient. At left the yeast cells are
budding, and at right, they have formed long, filamentous,
irregularly staining hyphae.

Morello-Mizer-Granato:

Back Matter

Figures

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

Plate 42 Colonies of three Aspergillus species. Some molds
may be recognized by the color of their spores (conidia).
Clockwise from left: A flavus (yellow), A fumigatus (smoky
gray-green), A niger (black).

% *

-r * - ^»

► + -

^^^^lj

Plate 43 Cryptococcus neoformans in cerebrospinal fluid
from a patient with AIDS. In the Gram stain at left, yeast cells
are seen to stain irregularly. The orange-staining halo around
some cells is the Cryptococcus capsule. In the India ink
preparation at right, the cryptococcal yeast cells are
surrounded by a capsule that is demarcated by the
suspension of charcoal particles in the India ink. India ink photo

courtesy Dr. E. J. Bottone.

Plate 44 Lactophenol cotton blue coverslip preparation
from a slide culture of Aspergillus fumigatus. At low power
(X100) magnification (left), three spore-bearing structures can
be seen. At higher power (X400) magnification (right), the
characteristics that permit genus and species identification
are clearly visualized.

Plate 45 Left: Methenamine silver stain of sinus biopsy
(X100). All of the black material represents the invading
fungus, Aspergillus flavus. Two of the characteristic spore-
bearing structures can be seen on the nasal cavity side
(arrows). Right: A calcofluor stain of the biopsy material as
seen under an ultraviolet light source (X400).

Plate 46 Methenamine silver stain of cyst form
of Pneumocystis carinii from lung biopsy of a
patient with AIDS.

Plate 47 KOH preparations of a hair and skin scales from patients with
tinea capitis (ringworm of the hair) and tinea corporis (ringworm of the
body). On the left, many round, reproductive spores of the dermatophyte
fungus are seen surrounding the hair; the filamentous hyphae invade the
hair shaft. On the right, the filamentous hyphae are seen invading skin
scales throughout the preparation.

Morello-Mizer-Granato:

Back Matter

Figures

Laboratory Manual and
Workbook in Microbiology,
7/e

Companies, 2003

:•

Plate 48 Lactophenol cotton blue
preparation of Blastomyces
dermatitidis growing in culture of
sputum. The characteristic thick-
walled, broad-based budding yeast
cells are seen at the top right and
bottom left of the preparation.

•~

■

•?

Plate 49 Trichomonas vaginalis in a
Gram stain of vaginal secretions. At
least one flagellum (arrow) can be
clearly seen. Most other parasites do
not stain with the Gram stain.

Plate 50 A trophozoite of Entamoeba
histolytica. The characteristic circular
nucleus at the top right portion of the
ameba has dark chromatin evenly
distributed around its edges and a
centrally placed karyosome.

Plate 51 Giardia lamblia (left) trophozoite and cyst seen in
stool specimen. At the right, the characteristic features of the
cyst are revealed more clearly (X1 ,000).

Plate 52 Plasmodium trophozoites in red blood cells
(arrows). P. vivax at left causes the blood cell to enlarge and
show characteristic stippling (Schuffner's dots). Courtesy
Dr. e. j. Bottone. At right, three trophozoites (ring forms) of
P. falciparum in a single red blood cell. Multiply infected cells
are characteristic of this malarial species; the infected cell is
not enlarged and no Schuffner's dots are present.

■^

Plate 53 Cryptosporidium spp. are prevalent in
animals but also infect humans, causing massive,
watery diarrhea. Diagnosis can be made by finding
oocysts in the patient's fecal specimen, either with a
modified acid-fast stain (circular red objects, left) or
with a specific fluorescent antibody reagent (circular
green objects, right).

Plate 54 Characteristic egg
of the fish tapeworm,
Diphyllobothrium latum, X400.
Larvae in raw or undercooked
fish mature to adulthood in the
human intestinal tract and
shed eggs that help provide
the diagnosis.

Plate 55 Echinococcus
granulosus cyst from human
liver. More than 1 2 larval forms
of Echinococcus can be seen
budding off from the thick-
walled capsule.

Internet Archive Audio

Featured

Top

Images

Featured

Top

Software

Featured

Top

Books

Featured

Top

Video

Featured

Top

Mobile Apps

Browser Extensions

Archive-It Subscription

Save Page Now

Full text of "كتب في علم الميكروبيولوجي"

See other formats